ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40f01 |
|---|---|
| Clone Library Name | barley_pub |
>MYF6_TETNG (Q6PUV5) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 239 Score = 33.5 bits (75), Expect = 0.42 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 5/41 (12%) Frame = -3 Query: 196 VLRRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 V +R SAPT RRKA TLR+ R+ + EA + VANP Sbjct: 87 VCKRKSAPTDRRKAATLRERRRLKKINEAFDALKRKSVANP 127
>MYF6_XENLA (Q92020) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 240 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 84 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 122
>MYF6_RAT (P19335) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_PIG (Q3YFL6) Myogenic factor 6 (Myf-6)| Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_MOUSE (P15375) Myogenic factor 6 (Myf-6) (Herculin)| Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_HUMAN (P23409) Myogenic factor 6 (Myf-6)| Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_CHICK (Q01795) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_BOVIN (Q7YS80) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 242 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 190 RRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 +R SAPT RRKA TLR+ R+ + EA R VANP Sbjct: 86 KRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANP 124
>MYF6_FUGRU (Q6SYV5) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 239 Score = 32.7 bits (73), Expect = 0.72 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%) Frame = -3 Query: 196 VLRRCSAPTARRKAKTLRKMRKPESAREA-----GREVANP 89 + +R SAPT RRKA TLR+ R+ + EA + VANP Sbjct: 87 ICKRKSAPTDRRKAATLRERRRLKKINEAFDALKRKTVANP 127
>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)| Length = 2214 Score = 32.3 bits (72), Expect = 0.94 Identities = 22/89 (24%), Positives = 34/89 (38%) Frame = -3 Query: 358 EERAGPKQRQRVTPVTSSCARRSTKKAQTP*TVEAXXXXXXXXXXXXXSGTTLPVLRRCS 179 +E+ PK+R R T V R + P T E SG T PV+ R Sbjct: 709 DEQNVPKRRSRNTAVEQRLRRLQDRSLTQPITTEEVVIAATEPIPASCSGGTHPVMARLP 768 Query: 178 APTARRKAKTLRKMRKPESAREAGREVAN 92 +PT R A +++ + ++ N Sbjct: 769 SPTVARSAVQPARLQASAHQKALAKDQTN 797
>MYF6_BRARE (Q6VNZ9) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 239 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 196 VLRRCSAPTARRKAKTLRKMRKPESAREA 110 + +R SAPT RRKA TLR+ R+ + EA Sbjct: 83 ICKRKSAPTDRRKAATLRERRRLKKINEA 111
>RFX5_HUMAN (P48382) DNA-binding protein RFX5 (Regulatory factor X subunit 5)| Length = 616 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 433 PPTRQASAMRNVSQETAKAARAQPREERAGPKQRQRVTPVTSSCARRSTKKAQTP 269 PP + A + AK R +PR++ G +R TP+ S+ A S + ++ P Sbjct: 446 PPAKAAKQDIEDTASDAKRKRGRPRKKSGGSGERNS-TPLKSAAAMESAQSSRLP 499
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 29.3 bits (64), Expect = 7.9 Identities = 28/111 (25%), Positives = 38/111 (34%) Frame = -3 Query: 433 PPTRQASAMRNVSQETAKAARAQPREERAGPKQRQRVTPVTSSCARRSTKKAQTP*TVEA 254 PP AS+ + + A R R + P+ R AR ++ TP T Sbjct: 237 PPASSASSPQAAAPAAPSATRLPRRTTPSAPRPSSRPARPPIPAARPPPRR--TPGTPRP 294 Query: 253 XXXXXXXXXXXXXSGTTLPVLRRCSAPTARRKAKTLRKMRKPESAREAGRE 101 P R SAPT RR R +P +AR GR+ Sbjct: 295 AAARARAPAGCS------PARRTPSAPTDRRCRAARRGSPRPPAARPPGRQ 339
>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)| Length = 1206 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3 Query: 463 YLVWYAFFADPPTRQASAMRNVSQETAKAARAQPREERAGPK-QRQRVTPVTSSCARRST 287 ++VW+ F +D T +N+S+E K A+A + + K + +++ P S R Sbjct: 1139 FMVWFEFCSDFKTIWKRESKNISKERLKMAQASVSKLTSEKKVETKKINPTASLKERLRQ 1198 Query: 286 KKA 278 K+A Sbjct: 1199 KEA 1201
>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)| Length = 1468 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3 Query: 463 YLVWYAFFADPPTRQASAMRNVSQETAKAARAQPREERAGPK-QRQRVTPVTSSCARRST 287 ++VW+ F +D T +N+S+E K A+A + + K + +++ P S R Sbjct: 1401 FMVWFEFCSDFKTIWKRESKNISKERLKMAQASVSKLTSEKKVETKKINPTASLKERLRQ 1460 Query: 286 KKA 278 K+A Sbjct: 1461 KEA 1463 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,755,211 Number of Sequences: 219361 Number of extensions: 643564 Number of successful extensions: 2306 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2305 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
