ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate ... 32 1.4
2IF2_TREDE (Q73NP6) Translation initiation factor IF-2 32 1.8
3LEA3_MAIZE (Q42376) Late embryogenesis abundant protein, group 3... 31 2.3
4ABP1_HUMAN (P19801) Amiloride-sensitive amine oxidase [copper-co... 31 2.3
5FLIH_BORBU (P52611) Flagellar assembly protein fliH 31 2.3
6B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band... 31 3.1
7B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band... 30 6.8
8B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3... 30 6.8
9IF2_COREF (Q8FPA7) Translation initiation factor IF-2 29 8.9
10GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (G... 29 8.9
11PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2... 29 8.9
12MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 29 8.9

>EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate 15-like 1|
           (Eps15-related protein) (Eps15R)
          Length = 864

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +3

Query: 3   PRPTPTSAKSTAVSRLPAF*NFPSAMDLWERARSFAGEAAKRSQELSLEAAKRSSVLVSE 182
           PRP P S KST VS+L +  +FP A D ++   + +G+  +  +      + +   + S 
Sbjct: 787 PRPKPPSGKSTPVSQLGSA-DFPEAPDPFQPLGADSGDPFQSKKGFGDPFSGKDPFVPSS 845

Query: 183 TAKKSK 200
            AK SK
Sbjct: 846 AAKPSK 851



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>IF2_TREDE (Q73NP6) Translation initiation factor IF-2|
          Length = 896

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 233 RDGRGGDQAGRPPRRPDHAPRLGHPRP 313
           R G+GG Q GRP  RP + P  G PRP
Sbjct: 212 RTGQGGQQ-GRPGDRPQNRPGFGGPRP 237



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>LEA3_MAIZE (Q42376) Late embryogenesis abundant protein, group 3 (LEA)|
          Length = 221

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 114 EAAKRSQELSLEAAKRSSVLVSETAKKSKEIFSETAIKSREMAAEATKQADLLAGQ 281
           EAAK+    + EAAK+ +   +ET K+     +E A +    A EA KQ    AGQ
Sbjct: 97  EAAKQKAGETTEAAKQKAGETTETTKQKAGETTEAARQKAADAMEAAKQKAAEAGQ 152



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>ABP1_HUMAN (P19801) Amiloride-sensitive amine oxidase [copper-containing]|
           precursor (EC 1.4.3.6) (Diamine oxidase) (DAO)
           (Amiloride-binding protein) (ABP) (Histaminase) (Kidney
           amine oxidase) (KAO)
          Length = 751

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 239 GRGGDQAGRPPRRPDHAPRLGHPRPLHPAHPR 334
           G+G D    PP    H PR   P P+H + PR
Sbjct: 270 GKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPR 301



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>FLIH_BORBU (P52611) Flagellar assembly protein fliH|
          Length = 306

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 135 ELSLEAAKRSSVLVSETAKKSKEIFSETAIKSREMAAEATKQADLLAGQIMH 290
           +L  E AKR  +   E   +SK +  E   K+ E+   A ++ADLL  + ++
Sbjct: 62  QLEEELAKRQELAKEEVQIESKRLIEEAKAKANEVLEAAKQEADLLQKEAIY 113



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>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 218 RHQVPRDGRGGDQAGRPPRRPDHAPRLGHPRPLHPAH 328
           RH V ++ +G  Q+GR  R P   PR   PR  H  H
Sbjct: 286 RHLVRKNAKGSTQSGREGREPGPTPR-ARPRAPHKPH 321



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>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 218 RHQVPRDGRGGDQAGRPPRRPDHAPRLGHPRPLHPAH 328
           RH V ++ +G  QA R  R P   PR   PR  H  H
Sbjct: 282 RHLVRKNAKGSTQAAREGREPGPTPR-ARPRAPHKPH 317



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>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1234

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 218 RHQVPRDGRGGDQAGRPPRRPDHAPRLGHPRPLHPAH 328
           RH V ++ +G  QA R  R P   PR   PR  H  H
Sbjct: 283 RHLVRKNAKGSTQAAREGREPGPTPR-ARPRAPHKPH 318



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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 212 GDRHQVPRDGRGGDQAGRPPRRPDHAPRLGHPRP 313
           G R   PRDG+GG +  RP       P  G PRP
Sbjct: 225 GQRSGAPRDGQGGPRGQRP------GPGSGGPRP 252



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>GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 455

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 212 GDRHQVPRDGRGGDQAGRPPRRPDHAPRLGHPRPLHP 322
           G   + PRD   G +   P  RP   PR   PR   P
Sbjct: 49  GKMQRAPRDSDAGREGQEPQPRPQDEPRAQQPRAQEP 85



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>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2|
           (Retina-derived POU-domain factor 1) (RPF-1)
          Length = 684

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 254 QAGRPPRRPDHAPRLGHPRPLHPAHP 331
           Q+  PP++P  +P  G P PL P +P
Sbjct: 261 QSSSPPQKPSQSPGHGLPSPLTPPNP 286



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 218  RHQVPRDGRGGDQAGRPPRRPDHAPRLGHP------RPLHPAHPRD 337
            RH  P  G+    AG  P +P+    LG P      +P  PA P+D
Sbjct: 992  RHHEPGPGQLTKSAGPTPEKPEEEATLGDPQLPAETKPPTPAPPKD 1037


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,582,923
Number of Sequences: 219361
Number of extensions: 711309
Number of successful extensions: 3337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3329
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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