ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 325 bits (164), Expect = 9e-86 Identities = 212/228 (92%) Strand = Plus / Plus Query: 362 gccggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagtt 421 |||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 442 gccggagccggacgccgcggagctcgagcgctacggcatcaccgaagacctccgcgagtt 501 Query: 422 cgtcaacggcatgaccataagcacctttcgcgacttccccttgcaagatgagccggagat 481 |||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 502 cgtcaagggcatgactatcagcaccttccgcgacttccccttgcaagatgagccggagat 561 Query: 482 gtctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacgaatggcaggctaggca 541 ||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 562 gtcggatgtgcccacggtatcgaacgtgcgtcaggatctgaatgagtggcaggccaggca 621 Query: 542 cgccactctcgtcctctctgccgtcaaggaaatttcaaagttcagata 589 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 622 cgccactctcgtcctctccgccgtcaaggaaatttcaaagttcagata 669 Score = 301 bits (152), Expect = 1e-78 Identities = 194/208 (93%) Strand = Plus / Plus Query: 78 atggatctctgggagagggcgcggtccttcgccggcgaggcggcgaagcggtcgcaggag 137 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 167 atggatctctgggagagggcgcgggccttcgccggggaggcggcgaagcggtcgcaggag 226 Query: 138 ctgtcgctggaggcggccaagcggtcgtcggtgctggtgtcggagacggcgaagaagtcc 197 |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 227 ctgtcggcggaggcggccaagcgctcgtcggcgctggtgtcggagacggcgaagaagtcc 286 Query: 198 aaggagatcttctcggagaccgccatcaagtcccgcgagatggccgcggaggcgaccaag 257 ||||||||||||||||||||||| | |||||| || ||||| || || ||||| |||||| Sbjct: 287 aaggagatcttctcggagaccgcgaccaagtcgcgggagatcgcggccgaggccaccaag 346 Query: 258 caggccgacctcctcgccggccagatca 285 |||||||||||||||||||||||||||| Sbjct: 347 caggccgacctcctcgccggccagatca 374
>dbj|AK107913.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G08, full insert sequence Length = 833 Score = 325 bits (164), Expect = 9e-86 Identities = 212/228 (92%) Strand = Plus / Plus Query: 362 gccggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagtt 421 |||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 429 gccggagccggacgccgcggagctcgagcgctacggcatcaccgaagacctccgcgagtt 488 Query: 422 cgtcaacggcatgaccataagcacctttcgcgacttccccttgcaagatgagccggagat 481 |||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 489 cgtcaagggcatgactatcagcaccttccgcgacttccccttgcaagatgagccggagat 548 Query: 482 gtctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacgaatggcaggctaggca 541 ||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 549 gtcggatgtgcccacggtatcgaacgtgcgtcaggatctgaatgagtggcaggccaggca 608 Query: 542 cgccactctcgtcctctctgccgtcaaggaaatttcaaagttcagata 589 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 609 cgccactctcgtcctctccgccgtcaaggaaatttcaaagttcagata 656 Score = 301 bits (152), Expect = 1e-78 Identities = 194/208 (93%) Strand = Plus / Plus Query: 78 atggatctctgggagagggcgcggtccttcgccggcgaggcggcgaagcggtcgcaggag 137 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 154 atggatctctgggagagggcgcgggccttcgccggggaggcggcgaagcggtcgcaggag 213 Query: 138 ctgtcgctggaggcggccaagcggtcgtcggtgctggtgtcggagacggcgaagaagtcc 197 |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 214 ctgtcggcggaggcggccaagcgctcgtcggcgctggtgtcggagacggcgaagaagtcc 273 Query: 198 aaggagatcttctcggagaccgccatcaagtcccgcgagatggccgcggaggcgaccaag 257 ||||||||||||||||||||||| | |||||| || ||||| || || ||||| |||||| Sbjct: 274 aaggagatcttctcggagaccgcgaccaagtcgcgggagatcgcggccgaggccaccaag 333 Query: 258 caggccgacctcctcgccggccagatca 285 |||||||||||||||||||||||||||| Sbjct: 334 caggccgacctcctcgccggccagatca 361
>dbj|AK101892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070O19, full insert sequence Length = 1346 Score = 325 bits (164), Expect = 9e-86 Identities = 212/228 (92%) Strand = Plus / Plus Query: 362 gccggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagtt 421 |||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 443 gccggagccggacgccgcggagctcgagcgctacggcatcaccgaagacctccgcgagtt 502 Query: 422 cgtcaacggcatgaccataagcacctttcgcgacttccccttgcaagatgagccggagat 481 |||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 503 cgtcaagggcatgactatcagcaccttccgcgacttccccttgcaagatgagccggagat 562 Query: 482 gtctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacgaatggcaggctaggca 541 ||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 563 gtcggatgtgcccacggtatcgaacgtgcgtcaggatctgaatgagtggcaggccaggca 622 Query: 542 cgccactctcgtcctctctgccgtcaaggaaatttcaaagttcagata 589 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 623 cgccactctcgtcctctccgccgtcaaggaaatttcaaagttcagata 670 Score = 301 bits (152), Expect = 1e-78 Identities = 194/208 (93%) Strand = Plus / Plus Query: 78 atggatctctgggagagggcgcggtccttcgccggcgaggcggcgaagcggtcgcaggag 137 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 168 atggatctctgggagagggcgcgggccttcgccggggaggcggcgaagcggtcgcaggag 227 Query: 138 ctgtcgctggaggcggccaagcggtcgtcggtgctggtgtcggagacggcgaagaagtcc 197 |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 228 ctgtcggcggaggcggccaagcgctcgtcggcgctggtgtcggagacggcgaagaagtcc 287 Query: 198 aaggagatcttctcggagaccgccatcaagtcccgcgagatggccgcggaggcgaccaag 257 ||||||||||||||||||||||| | |||||| || ||||| || || ||||| |||||| Sbjct: 288 aaggagatcttctcggagaccgcgaccaagtcgcgggagatcgcggccgaggccaccaag 347 Query: 258 caggccgacctcctcgccggccagatca 285 |||||||||||||||||||||||||||| Sbjct: 348 caggccgacctcctcgccggccagatca 375
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 301 bits (152), Expect = 1e-78 Identities = 194/208 (93%) Strand = Plus / Plus Query: 78 atggatctctgggagagggcgcggtccttcgccggcgaggcggcgaagcggtcgcaggag 137 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 30239186 atggatctctgggagagggcgcgggccttcgccggggaggcggcgaagcggtcgcaggag 30239245 Query: 138 ctgtcgctggaggcggccaagcggtcgtcggtgctggtgtcggagacggcgaagaagtcc 197 |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 30239246 ctgtcggcggaggcggccaagcgctcgtcggcgctggtgtcggagacggcgaagaagtcc 30239305 Query: 198 aaggagatcttctcggagaccgccatcaagtcccgcgagatggccgcggaggcgaccaag 257 ||||||||||||||||||||||| | |||||| || ||||| || || ||||| |||||| Sbjct: 30239306 aaggagatcttctcggagaccgcgaccaagtcgcgggagatcgcggccgaggccaccaag 30239365 Query: 258 caggccgacctcctcgccggccagatca 285 |||||||||||||||||||||||||||| Sbjct: 30239366 caggccgacctcctcgccggccagatca 30239393 Score = 151 bits (76), Expect = 3e-33 Identities = 97/104 (93%) Strand = Plus / Plus Query: 467 agatgagccggagatgtctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacga 526 |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || Sbjct: 30239640 agatgagccggagatgtcggatgtgcccacggtatcgaacgtgcgtcaggatctgaatga 30239699 Query: 527 atggcaggctaggcacgccactctcgtcctctctgccgtcaagg 570 |||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 30239700 gtggcaggccaggcacgccactctcgtcctctccgccgtcaagg 30239743 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 362 gccggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagtt 421 |||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 30239461 gccggagccggacgccgcggagctcgagcgctacggcatcaccgaagacctccgcgagtt 30239520 Query: 422 cgtcaacggcatgaccataagcacctttcgcgacttccccttgcaag 468 |||||| |||||||| || |||||||| ||||||||||||||||||| Sbjct: 30239521 cgtcaagggcatgactatcagcaccttccgcgacttccccttgcaag 30239567 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 179 ggagacggcgaagaagtccaaggagatcttctcggagaccgccatcaagtcccgcgagat 238 ||||||||||||||||| ||||||||||||||| |||||| | | ||| || | ||||| Sbjct: 4879429 ggagacggcgaagaagttcaaggagatcttctcagagaccacaaccaactcacaggagat 4879370 Query: 239 ggccgcggaggcgaccaagcaggccgacctcct 271 | |||||||| | ||||||||| |||||||| Sbjct: 4879369 cacagcggaggccaacaagcaggctgacctcct 4879337 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 372 gacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagttcgtcaacggc 431 |||||||| ||||||||| ||| ||||| | ||| |||||||||||||||||||| ||| Sbjct: 4879245 gacgccgcaaagctcgagcactatggcatcatcgaagacctccgcgagttcgtcaagggc 4879186 Query: 432 atgac 436 ||||| Sbjct: 4879185 atgac 4879181 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 568 aggaaatttcaaagttcagata 589 |||||||||||||||||||||| Sbjct: 30240678 aggaaatttcaaagttcagata 30240699
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 301 bits (152), Expect = 1e-78 Identities = 194/208 (93%) Strand = Plus / Plus Query: 78 atggatctctgggagagggcgcggtccttcgccggcgaggcggcgaagcggtcgcaggag 137 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 40103 atggatctctgggagagggcgcgggccttcgccggggaggcggcgaagcggtcgcaggag 40162 Query: 138 ctgtcgctggaggcggccaagcggtcgtcggtgctggtgtcggagacggcgaagaagtcc 197 |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 40163 ctgtcggcggaggcggccaagcgctcgtcggcgctggtgtcggagacggcgaagaagtcc 40222 Query: 198 aaggagatcttctcggagaccgccatcaagtcccgcgagatggccgcggaggcgaccaag 257 ||||||||||||||||||||||| | |||||| || ||||| || || ||||| |||||| Sbjct: 40223 aaggagatcttctcggagaccgcgaccaagtcgcgggagatcgcggccgaggccaccaag 40282 Query: 258 caggccgacctcctcgccggccagatca 285 |||||||||||||||||||||||||||| Sbjct: 40283 caggccgacctcctcgccggccagatca 40310 Score = 151 bits (76), Expect = 3e-33 Identities = 97/104 (93%) Strand = Plus / Plus Query: 467 agatgagccggagatgtctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacga 526 |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || Sbjct: 40557 agatgagccggagatgtcggatgtgcccacggtatcgaacgtgcgtcaggatctgaatga 40616 Query: 527 atggcaggctaggcacgccactctcgtcctctctgccgtcaagg 570 |||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 40617 gtggcaggccaggcacgccactctcgtcctctccgccgtcaagg 40660 Score = 141 bits (71), Expect = 3e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 362 gccggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagtt 421 |||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 40378 gccggagccggacgccgcggagctcgagcgctacggcatcaccgaagacctccgcgagtt 40437 Query: 422 cgtcaacggcatgaccataagcacctttcgcgacttccccttgcaag 468 |||||| |||||||| || |||||||| ||||||||||||||||||| Sbjct: 40438 cgtcaagggcatgactatcagcaccttccgcgacttccccttgcaag 40484 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 568 aggaaatttcaaagttcagata 589 |||||||||||||||||||||| Sbjct: 41595 aggaaatttcaaagttcagata 41616
>gb|AY110002.1| Zea mays CL21591_1 mRNA sequence Length = 1278 Score = 281 bits (142), Expect = 1e-72 Identities = 205/226 (90%) Strand = Plus / Minus Query: 364 cggagctcgacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagttcg 423 |||||| |||||| |||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct: 914 cggagcccgacgcggccgagcttgagcgctacggcatcaccgacgacctccgcgagttcg 855 Query: 424 tcaacggcatgaccataagcacctttcgcgacttccccttgcaagatgagccggagatgt 483 |||| | |||||||||||||||||| ||||||||||| ||||||||||||| || |||| Sbjct: 854 tcaaggacatgaccataagcaccttccgcgacttcccactgcaagatgagcctgaaatgt 795 Query: 484 ctgatgtgcccacggtgtcgaatgtgcgtcaggatctgaacgaatggcaggctaggcacg 543 |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 794 ctgatgtgccaacggtgtcgaatgtgcgtcaggatctgagcgaatggcaggccaggcacg 735 Query: 544 ccactctcgtcctctctgccgtcaaggaaatttcaaagttcagata 589 |||| || |||||||| || ||||||||||| || ||||||||||| Sbjct: 734 ccacacttgtcctctcggcagtcaaggaaatatcgaagttcagata 689 Score = 172 bits (87), Expect = 8e-40 Identities = 159/183 (86%) Strand = Plus / Minus Query: 116 ggcggcgaagcggtcgcaggagctgtcgctggaggcggccaagcggtcgtcggtgctggt 175 ||||||||| ||||||||||||| || ||||||| ||||||| ||||| | |||||| Sbjct: 1162 ggcggcgaattggtcgcaggagctctccgcggaggcgaccaagcgctcgtctgcgctggt 1103 Query: 176 gtcggagacggcgaagaagtccaaggagatcttctcggagaccgccatcaagtcccgcga 235 |||||||||||||||||||| ||||||||||| || ||||||||| |||||| | || Sbjct: 1102 ctcggagacggcgaagaagtcgaaggagatcttttccgagaccgcctccaagtcgctgga 1043 Query: 236 gatggccgcggaggcgaccaagcaggccgacctcctcgccggccagatcatgcacctcgc 295 ||| ||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 1042 gatcgccgccgaggcaaccaagcaggccgacctcctggccggccagatcaagcacctcgc 983 Query: 296 ctc 298 ||| Sbjct: 982 ctc 980
>ref|XM_464389.1| Oryza sativa (japonica cultivar-group), mRNA Length = 372 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 372 gacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagttcgtcaacggc 431 |||||||| ||||||||| ||| ||||| | ||| |||||||||||||||||||| ||| Sbjct: 193 gacgccgcaaagctcgagcactatggcatcatcgaagacctccgcgagttcgtcaagggc 252 Query: 432 atgac 436 ||||| Sbjct: 253 atgac 257 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 179 ggagacggcgaagaagtccaaggagatcttctcggagaccgccatcaagtcccgcgagat 238 ||||||||||||||||| ||||||||||||||| |||||| | | ||| || | ||||| Sbjct: 9 ggagacggcgaagaagttcaaggagatcttctcagagaccacaaccaactcacaggagat 68 Query: 239 ggccgcggaggcgaccaagcaggccgacctcct 271 | |||||||| | ||||||||| |||||||| Sbjct: 69 cacagcggaggccaacaagcaggctgacctcct 101
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 179 ggagacggcgaagaagtccaaggagatcttctcggagaccgccatcaagtcccgcgagat 238 ||||||||||||||||| ||||||||||||||| |||||| | | ||| || | ||||| Sbjct: 121588 ggagacggcgaagaagttcaaggagatcttctcagagaccacaaccaactcacaggagat 121529 Query: 239 ggccgcggaggcgaccaagcaggccgacctcct 271 | |||||||| | ||||||||| |||||||| Sbjct: 121528 cacagcggaggccaacaagcaggctgacctcct 121496 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 372 gacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagttcgtcaacggc 431 |||||||| ||||||||| ||| ||||| | ||| |||||||||||||||||||| ||| Sbjct: 121404 gacgccgcaaagctcgagcactatggcatcatcgaagacctccgcgagttcgtcaagggc 121345 Query: 432 atgac 436 ||||| Sbjct: 121344 atgac 121340
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 179 ggagacggcgaagaagtccaaggagatcttctcggagaccgccatcaagtcccgcgagat 238 ||||||||||||||||| ||||||||||||||| |||||| | | ||| || | ||||| Sbjct: 24168 ggagacggcgaagaagttcaaggagatcttctcagagaccacaaccaactcacaggagat 24109 Query: 239 ggccgcggaggcgaccaagcaggccgacctcct 271 | |||||||| | ||||||||| |||||||| Sbjct: 24108 cacagcggaggccaacaagcaggctgacctcct 24076 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 372 gacgccgccgagctcgagcgctacggcattaccgaggacctccgcgagttcgtcaacggc 431 |||||||| ||||||||| ||| ||||| | ||| |||||||||||||||||||| ||| Sbjct: 23984 gacgccgcaaagctcgagcactatggcatcatcgaagacctccgcgagttcgtcaagggc 23925 Query: 432 atgac 436 ||||| Sbjct: 23924 atgac 23920
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 356 ggccgagccggagctcgacgccgccgagctcg 387 |||||||||| |||||| |||||||||||||| Sbjct: 957106 ggccgagccgcagctcggcgccgccgagctcg 957137
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 377 cgccgagctcgagcgctacggcattaccgag 407 ||||| |||||||||||||||||| |||||| Sbjct: 558014 cgccgtgctcgagcgctacggcatgaccgag 557984
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 377 cgccgagctcgagcgctacggcattaccgag 407 ||||| |||||||||||||||||| |||||| Sbjct: 246878 cgccgtgctcgagcgctacggcatgaccgag 246848
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 378 gccgagctcgagcgctacggcattaccgag 407 |||| |||||||||||||||||| |||||| Sbjct: 374463 gccgtgctcgagcgctacggcatgaccgag 374434
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 375 gccgccgagctcgagcgctacggcat 400 |||||||||||||| ||||||||||| Sbjct: 26745851 gccgccgagctcgaacgctacggcat 26745876 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tcgccggcgaggcggcgaag 125 |||||||||||||||||||| Sbjct: 28492110 tcgccggcgaggcggcgaag 28492091 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ccttcgccggcgaggcggcg 122 |||||||||||||||||||| Sbjct: 27016711 ccttcgccggcgaggcggcg 27016730
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ggtcgtcggtgctggtgtcgga 181 |||||||||||||||||||||| Sbjct: 10281 ggtcgtcggtgctggtgtcgga 10260
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 375 gccgccgagctcgagcgctacggcat 400 |||||||||||||| ||||||||||| Sbjct: 477 gccgccgagctcgaacgctacggcat 502
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047G05 Length = 145431 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 375 gccgccgagctcgagcgctacggcat 400 |||||||||||||| ||||||||||| Sbjct: 103314 gccgccgagctcgaacgctacggcat 103339
>ref|NM_196958.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0079L16.22), mRNA Length = 2973 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 cgagccggagctcgacgccgccgagctcg 387 |||||||||||||| |||||||| ||||| Sbjct: 1029 cgagccggagctcgccgccgccgcgctcg 1057
>ref|XM_370336.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06833.4) partial mRNA Length = 2883 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaagaagtccaaggagatctt 208 ||||||||||||||||||||| Sbjct: 432 gaagaagtccaaggagatctt 452
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 cgacgccgccgagctcgagcg 391 ||||||||||||||||||||| Sbjct: 2608838 cgacgccgccgagctcgagcg 2608818
>ref|XM_822095.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.211.0470) partial mRNA Length = 2496 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 aagaagtccaaggagatcttc 209 ||||||||||||||||||||| Sbjct: 579 aagaagtccaaggagatcttc 559
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 cgagccggagctcgacgccgccgagctcg 387 |||||||||||||| |||||||| ||||| Sbjct: 16923537 cgagccggagctcgccgccgccgcgctcg 16923565
>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence Length = 147452 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 cgagccggagctcgacgccgccgagctcg 387 |||||||||||||| |||||||| ||||| Sbjct: 107989 cgagccggagctcgccgccgccgcgctcg 108017
>gb|AE004578.1| Pseudomonas aeruginosa PAO1, section 139 of 529 of the complete genome Length = 11684 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 ccgcgagttcgtcaacggcat 433 ||||||||||||||||||||| Sbjct: 1451 ccgcgagttcgtcaacggcat 1471
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 cgagccggagctcgacgccgccgagctcg 387 |||||||||||||| |||||||| ||||| Sbjct: 16932577 cgagccggagctcgccgccgccgcgctcg 16932605
>ref|NM_188364.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1851 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 430 ggagctcgacgccgccgagc 411
>ref|NM_188355.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1839 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 388 ggagctcgacgccgccgagc 369
>ref|XM_474484.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 999 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 648 gcggtcggcggcgatggtgtcggagacggcga 617
>ref|XM_472248.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 606 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gcgaagtcgacggcggtgag 43 |||||||||||||||||||| Sbjct: 64 gcgaagtcgacggcggtgag 83
>ref|XM_607004.2| PREDICTED: Bos taurus similar to ATP-binding cassette sub-family A member 2 (ATP-binding cassette transporter 2) (ATP-binding cassette 2) (LOC528578), mRNA Length = 5080 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcggtgctggtgtcggagac 184 |||||||||||||||||||| Sbjct: 2499 tcggtgctggtgtcggagac 2480
>emb|X66793.1|AERPONG A.eutrophus rpoN gene for sigma factor 54 Length = 3720 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ccaagcaggccgacctcctcgccg 276 ||||||||||||||| |||||||| Sbjct: 452 ccaagcaggccgaccacctcgccg 429
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 ggaggcggccaagcggtcgtcggt 169 ||||||||| |||||||||||||| Sbjct: 172222 ggaggcggcgaagcggtcgtcggt 172245
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 104699 gcggtcggcggcgatggtgtcggagacggcga 104668
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 35479896 gcggtcggcggcgatggtgtcggagacggcga 35479865 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gcgaagtcgacggcggtgag 43 |||||||||||||||||||| Sbjct: 18769440 gcgaagtcgacggcggtgag 18769421
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 5876374 ggagctcgacgccgccgagc 5876393 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 5842187 ggagctcgacgccgccgagc 5842206
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gcgaagtcgacggcggtgag 43 |||||||||||||||||||| Sbjct: 118603 gcgaagtcgacggcggtgag 118584
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 80115 ggagctcgacgccgccgagc 80134 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 45928 ggagctcgacgccgccgagc 45947
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tcgccggcgaggcggcgaag 125 |||||||||||||||||||| Sbjct: 99143 tcgccggcgaggcggcgaag 99124
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ccttcgccggcgaggcggcg 122 |||||||||||||||||||| Sbjct: 140472 ccttcgccggcgaggcggcg 140491
>dbj|AK107298.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C06, full insert sequence Length = 1026 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gcgaagtcgacggcggtgag 43 |||||||||||||||||||| Sbjct: 279 gcgaagtcgacggcggtgag 298
>dbj|AK105982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G02, full insert sequence Length = 1113 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 525 gcggtcggcggcgatggtgtcggagacggcga 494
>dbj|AK105888.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E04, full insert sequence Length = 1058 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 460 gcggtcggcggcgatggtgtcggagacggcga 429
>dbj|AK105750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B10, full insert sequence Length = 2056 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 476 ggagctcgacgccgccgagc 457
>dbj|AK100787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120P09, full insert sequence Length = 1452 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ccttcgccggcgaggcggcg 122 |||||||||||||||||||| Sbjct: 49 ccttcgccggcgaggcggcg 30
>dbj|AK073127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011F02, full insert sequence Length = 2041 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggagctcgacgccgccgagc 384 |||||||||||||||||||| Sbjct: 1461 ggagctcgacgccgccgagc 1480
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cttcgccggcgaggcggcga 123 |||||||||||||||||||| Sbjct: 190178 cttcgccggcgaggcggcga 190197
>dbj|AK070001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034E19, full insert sequence Length = 950 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 gcggtcgtcggtgctggtgtcggagacggcga 189 ||||||| ||| | |||||||||||||||||| Sbjct: 461 gcggtcggcggcgatggtgtcggagacggcga 430
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cagcgaagtcgacggcggtg 41 |||||||||||||||||||| Sbjct: 2674616 cagcgaagtcgacggcggtg 2674597
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cttcgccggcgaggcggcga 123 |||||||||||||||||||| Sbjct: 190178 cttcgccggcgaggcggcga 190197
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cgtcagcgaagtcgacggcg 38 |||||||||||||||||||| Sbjct: 570099 cgtcagcgaagtcgacggcg 570080 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,994,279 Number of Sequences: 3902068 Number of extensions: 2994279 Number of successful extensions: 71152 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69662 Number of HSP's gapped (non-prelim): 1489 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
