ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 37 0.045
2MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 35 0.23
3MTNN_BUCAP (O51931) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 32 1.1
4YDH3_PLAFS (P14589) Hypothetical protein 3' to Asp-rich and His-... 30 4.2
5MTNN_BUCAI (P57306) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 30 5.6
6SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 9.5

>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 229

 Score = 37.0 bits (84), Expect = 0.045
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 333 GKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINXXXXXXXXXXXXXXXDVFLASDVAFH 512
           GKD  L    +G V+AA+ T A +QL KPD +IN               D+ ++ +  +H
Sbjct: 40  GKDVALLQSGIGKVAAAIGTTALLQLAKPDCVIN-TGSAGGVAKGLKVGDIVISDETRYH 98

Query: 513 D 515
           D
Sbjct: 99  D 99



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>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 231

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 294 GEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIINXXXXXXXXXXXXX 473
           GEY+G  + L+  G         +G V+AA+ T   +   KPD +IN             
Sbjct: 36  GEYEGTEVILLKSG---------IGKVNAAISTTLLLDRYKPDYVIN-TGSAGGFHHTLN 85

Query: 474 XXDVFLASDVAFHDRRIPIPVFD-SYG 551
             DV +++DV  HD  + +  FD  YG
Sbjct: 86  VGDVVISTDVRHHD--VDVTAFDYEYG 110



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>MTNN_BUCAP (O51931) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 235

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 288 YHGEYKGLHIDLVWPGKDPLLGVDSVGTVSAALVTYASIQLLKPDLIIN 434
           Y G +K + I L+  G         +G VSA++ T  SI L +PD IIN
Sbjct: 34  YTGTFKKIEIFLILSG---------IGKVSASMSTTISINLFQPDFIIN 73



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>YDH3_PLAFS (P14589) Hypothetical protein 3' to Asp-rich and His-rich proteins|
           (Fragment)
          Length = 53

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 434 RWYCWRFQGQRSRYW 478
           RW+CWR +G R R+W
Sbjct: 12  RWWCWRRRGWRRRWW 26



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>MTNN_BUCAI (P57306) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 232

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = +3

Query: 174 VLVVIAMQTEALPLVTRFQLVEAAADESIFPKGAPWTRYHGEYKGLHIDLVWPGKDPLLG 353
           ++  I  +TE L  +  F + +      I         Y G++K   + L+  G      
Sbjct: 5   IIGAINQETERLKKIIHFYIEKKINTYKI---------YIGKFKSHDVFLIKSG------ 49

Query: 354 VDSVGTVSAALVTYASIQLLKPDLIIN 434
              +G VSA++ T   I L KPD IIN
Sbjct: 50  ---IGKVSASVATMILIDLYKPDTIIN 73



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>SYL_CAUCR (Q9A217) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 861

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 183 VIAMQTEALPLVTRF--QLVEAAADESIFPKGAPWTRYHGEYKGLHIDLVWPGKDPLLGV 356
           V+A + EAL ++ R         A+E+       W R  GE  G+ +D  WP  DP L  
Sbjct: 747 VLAARAEALNILARLVAPFTPHLAEEA-------WARMGGE--GMVVDAPWPKADPALAA 797

Query: 357 D 359
           D
Sbjct: 798 D 798


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,377,793
Number of Sequences: 219361
Number of extensions: 1398097
Number of successful extensions: 4412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4410
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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