ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40d09 |
|---|---|
| Clone Library Name | barley_pub |
>DC1I2_HUMAN (Q13409) Cytoplasmic dynein 1 intermediate chain 2 (Dynein| intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic dynein intermediate chain 2) Length = 638 Score = 33.1 bits (74), Expect = 0.61 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = +2 Query: 2 WLPPSLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGG 181 W+PP +SPS S+ +PS G D +G G + DP + + H +D G Sbjct: 81 WVPPPMSPSSKSVSTPSEAGSQD-----SGDGAVGSRTLHWDTDPSVL---QLHSDSDLG 132 Query: 182 RPPL 193 R P+ Sbjct: 133 RGPI 136
>DC1I2_RAT (Q62871) Cytoplasmic dynein 1 intermediate chain 2 (Dynein| intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic dynein intermediate chain 2) Length = 638 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 2 WLPPSLSPSRNSIWSPSRPGPLDWRGVRTGKGRLH 106 W+PP +SPS S+ +PS G D G LH Sbjct: 81 WVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLH 115
>MURD_BDEBA (Q6MIF8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 462 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 54 GLVHWIGGASEQGKAGFTREGRKSQVIL*SIG--MDEHMGRRTVGGLLFT 197 G+ W+GGA+E+ + R K+QV++ + M EH G ++FT Sbjct: 139 GVKTWVGGANEKPLVDYLRLDDKAQVVIAEVSSFMLEHCDTFNPGNIVFT 188
>WOX3A_MAIZE (Q70UV1) WUSCHEL-related homeobox 3A (Narrow sheath protein 1)| Length = 262 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = -3 Query: 555 SCSS----PWPATASLTHSPCPLGAPAGHARHLEPPSLPSCCRFRYKAL 421 SCSS W AT ++ H GA +G + LP CCR K L Sbjct: 187 SCSSNQLEEWEATDAMEHCDASCGAASGSSDEGGALQLPPCCRRPLKTL 235
>COAE_MYCPA (Q740M4) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 407 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 113 RKEVSGDPLINWHGRTHGTADGGRP 187 R + +GDP + WH R H +AD GRP Sbjct: 307 RYDHTGDPAL-WHKRIHASADPGRP 330
>RL2_PSESM (Q889W8) 50S ribosomal protein L2| Length = 274 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 17 LSPSRNSIWSPSRPGPLDWRGVR-TGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +S S +S+ S + G WRGVR T +G V+ +P+ + HG G GGR P+ Sbjct: 196 VSNSEHSLRSLGKAGAKRWRGVRPTVRG--------VAMNPVDHPHGGGEGRTSGGRHPV 247
>RL2_PSEPK (Q88QN2) 50S ribosomal protein L2| Length = 274 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 17 LSPSRNSIWSPSRPGPLDWRGVR-TGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +S S +S+ S + G WRGVR T +G V+ +P+ + HG G GGR P+ Sbjct: 196 VSNSEHSLRSLGKAGAKRWRGVRPTVRG--------VAMNPVDHPHGGGEGRTSGGRHPV 247
>RL15_VIBVY (Q7MPG9) 50S ribosomal protein L15| Length = 144 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +LSP+ S +P R G G+ GR HKG+K SG G+ +GG+ PL Sbjct: 5 TLSPAAGSKHAPKRVGRGIGSGLGKTGGRGHKGQKSRSG-------GKVRPGFEGGQMPL 57
>RL15_VIBVU (Q8DE59) 50S ribosomal protein L15| Length = 144 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +LSP+ S +P R G G+ GR HKG+K SG G+ +GG+ PL Sbjct: 5 TLSPAAGSKHAPKRVGRGIGSGLGKTGGRGHKGQKSRSG-------GKVRPGFEGGQMPL 57
>ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (PAK-interacting| exchange factor beta) (Beta-Pix) (COOL-1) (p85) Length = 803 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 307 RPLSVECRVPLQPLRGQQAPALRRELSSLKRRMEPPLVKRRP 182 +P S+ C P PLR A + +LS + M+ L KR+P Sbjct: 648 KPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKP 689
>ARHG7_RAT (O55043) Rho guanine nucleotide exchange factor 7 (PAK-interacting| exchange factor beta) (Beta-Pix) Length = 646 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 307 RPLSVECRVPLQPLRGQQAPALRRELSSLKRRMEPPLVKRRP 182 +P S+ C P PLR A + +LS + M+ L KR+P Sbjct: 470 KPWSLSCLRPAPPLRPSAALCYKEDLSRSPKTMKKLLPKRKP 511
>VGLH_HCMVA (P12824) Glycoprotein H precursor| Length = 743 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 5 LPPSLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHK 109 +PP + S +W P + P DW+G T G LH+ Sbjct: 156 VPPPIDLSIPHVWMPPQTTPHDWKGSHTTSG-LHR 189
>RL15_VIBCH (Q9KP03) 50S ribosomal protein L15| Length = 144 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +LSP+ S +P R G G+ GR HKG+K SG G+ +GG+ PL Sbjct: 5 TLSPAAGSKHAPKRLGRGVGSGLGKTGGRGHKGQKSRSG-------GKVRPGFEGGQMPL 57
>TAF1C_MOUSE (Q6PDZ2) TATA box-binding protein-associated factor, RNA polymerase| I, subunit C (TATA box-binding protein-associated factor 1C) (TBP-associated factor 1C) (TBP-associated factor RNA polymerase I 95 kDa) (TAFI95) Length = 836 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 11 PSLSPSRNSIWSPSRPGPL 67 P+LS ++N +W PS PGPL Sbjct: 48 PTLSFAKNLLWEPSTPGPL 66
>COEA1_CHICK (P32018) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1888 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 89 GKGRLHKGRKEVSGDPLINWHGRTHGTAD 175 G + G + SGDP I WH +GT D Sbjct: 191 GSEKTRVGLAQYSGDPRIEWHLNAYGTKD 219
>RL15_VIBPA (Q87SZ4) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +L+P+ S +P R G G+ GR HKG+K SG G+ +GG+ PL Sbjct: 5 TLAPAAGSKHAPKRVGRGIGSGLGKTGGRGHKGQKSRSG-------GKVRPGFEGGQMPL 57
>RL15_PHOLL (Q7MYH0) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 +LSP+ S +P R G G+ GR HKG+K SG G +GG+ PL Sbjct: 5 TLSPADGSKHAPKRVGRGIGSGLGKTGGRGHKGQKSRSG-------GGVRRGFEGGQMPL 57 Query: 194 H 196 + Sbjct: 58 Y 58
>RL15_BLOPB (Q493J0) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = +2 Query: 14 SLSPSRNSIWSPSRPGPLDWRGVRTGKGRLHKGRKEVSGDPLINWHGRTHGTADGGRPPL 193 ++SPSR S R G G+ GR HKG+K SG G+ +GG+ PL Sbjct: 5 TISPSRGSKHLSKRVGRGIGSGLGKTGGRGHKGQKSRSG-------GKVRLGFEGGQTPL 57 Query: 194 H 196 + Sbjct: 58 Y 58
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 29.3 bits (64), Expect = 8.8 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Frame = +3 Query: 243 KAGACCPRNGCNGTRHST-DKG--RPTPSHXXXXXXXXXXXXXXXXXSQPLRKKPPQG-- 407 K G C P N N ++HST KG P PS PL ++PP Sbjct: 1869 KGGRCHPSNSFNQSKHSTWGKGPWHPLPS----------GSSSLTTSGSPLLERPPPSFT 1918 Query: 408 SSNPAEPCSETDNRTGETAAPGAGRDLL 491 S + + TD +T G G+ +L Sbjct: 1919 SGDALQGFGLTDLTQRKTMTQGNGKSVL 1946
>COAE_MYCLE (Q50178) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 410 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +2 Query: 113 RKEVSGDPLINWHGRTHGTADGGRP 187 R E S DP + WH R H +AD GRP Sbjct: 310 RYEHSSDPNL-WHKRFHASADPGRP 333
>LACTB_HUMAN (P83111) Serine beta-lactamase-like protein LACTB| Length = 547 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = +3 Query: 375 SQPLRKKP------PQGSSNPAEPCSETDNRTGETAAPGAGRDLLARLKDRVNA 518 + PL + P P PA PCS R E++ RDLL R+KD V A Sbjct: 76 ASPLAEPPQEQSLAPWSPQTPAPPCSRCFARAIESS-----RDLLHRIKDEVGA 124
>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)| Length = 892 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +3 Query: 384 LRKKPPQGSSNPAEPCSETDNRTGETAAPGAG 479 L KK P GSS P P SE + + PGAG Sbjct: 403 LSKKSPPGSSVPERPLSERELPPRPDSPPGAG 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,826,274 Number of Sequences: 219361 Number of extensions: 1670723 Number of successful extensions: 5666 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5654 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
