ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40d07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184305.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1511 Score = 117 bits (59), Expect = 4e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||| ||||||| | |||||||||||||| Sbjct: 329 cggtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcgg 388 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 389 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgac 448 Query: 520 gttgcctcgctcaggtaccggggccgcgatgccgccgccaacttccc 566 || || ||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 449 gtggcggcgctccggtaccgggggcgcgacgcggccaccaacttccc 495 Score = 40.1 bits (20), Expect = 7.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 275 gcgcgtccacggccacaacggagtcaggcgccgccg 310 |||||||||||||||| || ||||| |||| ||||| Sbjct: 162 gcgcgtccacggccaccaccgagtccggcggcgccg 197
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 4e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||| ||||||| | |||||||||||||| Sbjct: 2201605 cggtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcgg 2201664 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 2201665 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgac 2201724 Query: 520 gttgcctcgctcaggtaccggggccgcgatgccgccgccaacttccc 566 || || ||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 2201725 gtggcggcgctccggtaccgggggcgcgacgcggccaccaacttccc 2201771 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||||||||||| | |||||||||||||| Sbjct: 2153521 cggtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcgg 2153580 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 2153581 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgac 2153640 Query: 520 gt 521 || Sbjct: 2153641 gt 2153642 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 402 gttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgcca 461 |||||||||||| |||||||||||||||||| |||||||| | |||||||||||||| || Sbjct: 28613998 gttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgcagatctacgagcggca 28613939 Query: 462 cgctcgcgtctggctcggcac 482 | || || ||||||||||| Sbjct: 28613938 ccagcgggtgtggctcggcac 28613918 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 26728008 cgcgtctggctcggcaccttc 26727988 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttcccg 489 ||||||||||||||||||| |||| Sbjct: 11767217 cgcgtctggctcggcacctacccg 11767240 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 5454411 tctggctcggcaccttcccg 5454392 Score = 40.1 bits (20), Expect = 7.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 275 gcgcgtccacggccacaacggagtcaggcgccgccg 310 |||||||||||||||| || ||||| |||| ||||| Sbjct: 2201438 gcgcgtccacggccaccaccgagtccggcggcgccg 2201473
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 117 bits (59), Expect = 4e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||| ||||||| | |||||||||||||| Sbjct: 122717 cggtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcgg 122776 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 122777 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgac 122836 Query: 520 gttgcctcgctcaggtaccggggccgcgatgccgccgccaacttccc 566 || || ||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 122837 gtggcggcgctccggtaccgggggcgcgacgcggccaccaacttccc 122883 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||||||||||| | |||||||||||||| Sbjct: 74633 cggtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcgg 74692 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 74693 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgac 74752 Query: 520 gt 521 || Sbjct: 74753 gt 74754 Score = 40.1 bits (20), Expect = 7.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 275 gcgcgtccacggccacaacggagtcaggcgccgccg 310 |||||||||||||||| || ||||| |||| ||||| Sbjct: 122550 gcgcgtccacggccaccaccgagtccggcggcgccg 122585
>dbj|AK065008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E21, full insert sequence Length = 1512 Score = 117 bits (59), Expect = 4e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||| ||||||| | |||||||||||||| Sbjct: 329 cggtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcgg 388 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 389 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgac 448 Query: 520 gttgcctcgctcaggtaccggggccgcgatgccgccgccaacttccc 566 || || ||||| |||||||||| ||||| || ||| |||||||||| Sbjct: 449 gtggcggcgctccggtaccgggggcgcgacgcggccaccaacttccc 495 Score = 40.1 bits (20), Expect = 7.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 275 gcgcgtccacggccacaacggagtcaggcgccgccg 310 |||||||||||||||| || ||||| |||| ||||| Sbjct: 162 gcgcgtccacggccaccaccgagtccggcggcgccg 197
>gb|BT009310.1| Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence Length = 1470 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgccacgc 464 |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| Sbjct: 286 caagggcgtggtgccgcagcccaacgggcgctggggcgcgcagatctacgagcgccacca 345 Query: 465 tcgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 346 gcgcgtctggctcggcaccttc 367
>ref|NM_184298.1| Oryza sativa (japonica cultivar-group), mRNA Length = 954 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Plus Query: 400 cggttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgc 459 |||| |||||| |||||||||||||| |||||||||||||| | |||||||||||||| Sbjct: 196 cggtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcgg 255 Query: 460 cacgctcgcgtctggctcggcaccttcccggatcaggactcggcggcgcgtgcctacgac 519 ||||| || || |||||||| || ||||| || |||| |||||||||| ||||||||| Sbjct: 256 cacgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgac 315 Query: 520 gt 521 || Sbjct: 316 gt 317
>ref|NM_192160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 402 gttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcg 458 |||||||||||| |||||||||||||||||| |||||||| | |||||||||||||| Sbjct: 243 gttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgcagatctacgagcg 299
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 402 gttcaagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgcca 461 |||||||||||| |||||||||||||||||| |||||||| | |||||||||||||| || Sbjct: 140437 gttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgcagatctacgagcggca 140378 Query: 462 cgctcgcgtctggctcggcac 482 | || || ||||||||||| Sbjct: 140377 ccagcgggtgtggctcggcac 140357
>gb|BT017462.1| Zea mays clone EL01N0407E07.c mRNA sequence Length = 1115 Score = 79.8 bits (40), Expect = 9e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 423 gcccaacgggcggtggggctcccagatctacgagcgccacgctcgcgtctggctcggcac 482 ||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||| Sbjct: 9 gcccaacgggcggtggggcgcgcagatctacgagcgccaccagcgcgtgtggctcggcac 68 Query: 483 cttc 486 |||| Sbjct: 69 cttc 72
>ref|XM_475850.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1185 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgccacgc 464 |||||||||||||||||| || ||||||||||||||| | ||||| |||||||| ||| Sbjct: 207 caagggcgtggtgccgcaaccgaacgggcggtggggcgcgcagatatacgagcggcacca 266 Query: 465 tcgcgtctggctcggcac 482 || || ||||||||||| Sbjct: 267 gcgggtgtggctcggcac 284
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgccacgc 464 |||||||||||||||||| || ||||||||||||||| | ||||| |||||||| ||| Sbjct: 14263 caagggcgtggtgccgcaaccgaacgggcggtggggcgcgcagatatacgagcggcacca 14322 Query: 465 tcgcgtctggctcggcac 482 || || ||||||||||| Sbjct: 14323 gcgggtgtggctcggcac 14340
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcg 458 |||||||||||||||||| || ||||||||||||||| | ||||| |||||||| Sbjct: 89448 caagggcgtggtgccgcaaccgaacgggcggtggggcgcgcagatatacgagcg 89501
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgccacgc 464 |||||||||||||||||| || ||||||||||||||| | ||||| |||||||| ||| Sbjct: 113951 caagggcgtggtgccgcaaccgaacgggcggtggggcgcgcagatatacgagcggcacca 114010 Query: 465 tcgcgtctggctcggcac 482 || || ||||||||||| Sbjct: 114011 gcgggtgtggctcggcac 114028
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 405 caagggcgtggtgccgcagcccaacgggcggtggggctcccagatctacgagcgccacgc 464 |||||||||||||||||| || ||||||||||||||| | ||||| |||||||| ||| Sbjct: 27082867 caagggcgtggtgccgcaaccgaacgggcggtggggcgcgcagatatacgagcggcacca 27082926 Query: 465 tcgcgtctggctcggcac 482 || || ||||||||||| Sbjct: 27082927 gcgggtgtggctcggcac 27082944 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 21264250 cgcgtctggctcggcaccttc 21264270
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 306 cgccggaagatcgacgacggctctgagc 333 |||||||||||||||||||||||||||| Sbjct: 146995 cgccggaagatcgacgacggctctgagc 147022
>gb|AC116180.4| Mus musculus BAC clone RP24-167M11 from chromosome 9, complete sequence Length = 149442 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacac 172 ||||||||||||||||||||||| Sbjct: 22598 cacacaagcgcacatacacacac 22620
>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence Length = 166132 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacac 172 ||||||||||||||||||||||| Sbjct: 165647 cacacaagcgcacatacacacac 165669
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 cggcgtcatcacggttcaaggg 410 |||||||||||||||||||||| Sbjct: 3509139 cggcgtcatcacggttcaaggg 3509118
>gb|AC121577.3| Mus musculus BAC clone RP23-244N5 from 15, complete sequence Length = 200103 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 151 acacaagcgcacatacacacac 172 |||||||||||||||||||||| Sbjct: 137625 acacaagcgcacatacacacac 137604
>gb|BC016020.1|BC016020 Homo sapiens, Similar to LINE retrotransposable element 1, clone IMAGE:4720177, mRNA Length = 1219 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 gaaaacaaagaaaatcaacaag 217 |||||||||||||||||||||| Sbjct: 321 gaaaacaaagaaaatcaacaag 342
>emb|AL355840.2|CNS05TCV Human chromosome 14 DNA sequence BAC R-382E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179937 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 gaaaacaaagaaaatcaacaag 217 |||||||||||||||||||||| Sbjct: 87644 gaaaacaaagaaaatcaacaag 87623
>gb|AY831395.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 4 (BIERF4) mRNA, complete cds Length = 1214 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 419 cgcgtctggctcggcaccttc 439
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05, complete sequence Length = 109126 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 50856 cgcgtctggctcggcaccttc 50876
>gb|AC144852.3| Mus musculus BAC clone RP24-341K21 from chromosome 10, complete sequence Length = 169565 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cacaagcgcacatacacacac 172 ||||||||||||||||||||| Sbjct: 29012 cacaagcgcacatacacacac 29032
>ref|NM_196730.1| Oryza sativa (japonica cultivar-group) putative retrovirus-related pol polyprotein from transposon TNT (OSJNBa0094K20.5), mRNA Length = 375 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 109 cgcgtctggctcggcaccttc 129
>ref|NM_192445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 879 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 355 cgcgtctggctcggcaccttc 375
>ref|XM_470561.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 990 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 358 cgcgtctggctcggcaccttc 378
>ref|XM_479493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 280 cgcgtctggctcggcaccttc 300
>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence Length = 175843 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgcacatacacacactccaaa 178 ||||||||||||||||||||| Sbjct: 96324 cgcacatacacacactccaaa 96344
>gb|AC114678.20| Mus musculus chromosome 10, clone RP24-213L12, complete sequence Length = 180079 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cacaagcgcacatacacacac 172 ||||||||||||||||||||| Sbjct: 178426 cacaagcgcacatacacacac 178446
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 12688290 cgcgtctggctcggcaccttc 12688310 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 4354712 cgcgtctggctcggcaccttc 4354692
>gb|AF125462.1| Caenorhabditis elegans cosmid Y66H1A, complete sequence Length = 28026 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 gaaaacaaagaaaatcaacaa 216 ||||||||||||||||||||| Sbjct: 1142 gaaaacaaagaaaatcaacaa 1122
>gb|AC110882.13| Mus musculus chromosome 18, clone RP23-287A10, complete sequence Length = 203782 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 150 cacacaagcgcacatacacacactccaaa 178 |||||||||||||| |||||||| ||||| Sbjct: 196747 cacacaagcgcacacacacacacaccaaa 196719
>gb|AC102429.11| Mus musculus chromosome 18, clone RP24-93K11, complete sequence Length = 216331 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 150 cacacaagcgcacatacacacactccaaa 178 |||||||||||||| |||||||| ||||| Sbjct: 19017 cacacaagcgcacacacacacacaccaaa 18989
>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence Length = 136553 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 caagaaaacaaagaaaatcaa 213 ||||||||||||||||||||| Sbjct: 89848 caagaaaacaaagaaaatcaa 89828
>gb|AY339377.1| Oryza sativa (japonica cultivar-group) Ap24 mRNA, complete cds Length = 1089 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 396 cgcgtctggctcggcaccttc 416
>gb|AY323486.1| Oryza sativa (japonica cultivar-group) TSI-1-like protein (si1) mRNA, complete cds Length = 968 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 405 cgcgtctggctcggcaccttc 425
>emb|AL139341.9| Human DNA sequence from clone RP11-99N20 on chromosome 10 Contains the 5' end of a novel gene, the gene for glutathione transferase omega 1 (GSTO1), the 5' end of a variant of the gene for a novel glutathione-S-transferase and two CpG islands, complete sequence Length = 104378 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ccaagaaaacaaagaaaatca 212 ||||||||||||||||||||| Sbjct: 8848 ccaagaaaacaaagaaaatca 8868
>gb|AY297447.1| Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds Length = 885 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 324 cgcgtctggctcggcaccttc 344
>emb|AL593845.5| Zebrafish DNA sequence from clone BUSM1-142B24 in linkage group 17 Contains a novel gene for a protein similar to human FLJ11186, a novel gene similar to human KIAA1316 and fly CG2747, a novel gene for a protein with a HECT-domain (ubiquitin-transferase) and a CpG island, complete sequence Length = 89159 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 165 acacacactccaaagaaaacacacg 189 |||||||||||| |||||||||||| Sbjct: 46758 acacacactccatagaaaacacacg 46782
>emb|BX465838.15| Zebrafish DNA sequence from clone DKEY-11J8 in linkage group 17, complete sequence Length = 229940 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 acacacactccaaagaaaacacacg 189 |||||||||||| |||||||||||| Sbjct: 213249 acacacactccatagaaaacacacg 213225
>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8, complete sequence Length = 184723 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacactc 174 |||||| |||||||||||||||||| Sbjct: 23678 cacacacgcgcacatacacacactc 23702
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 71785 cgcgtctggctcggcaccttc 71805
>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence Length = 161873 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 94601 cgcgtctggctcggcaccttc 94621 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 78268 cgcgtctggctcggcaccttc 78288
>ref|NM_067526.2| Caenorhabditis elegans Y66H1A.4 (Y66H1A.4) mRNA, complete cds Length = 1185 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 gaaaacaaagaaaatcaacaa 216 ||||||||||||||||||||| Sbjct: 1012 gaaaacaaagaaaatcaacaa 992
>gb|AC153527.9| Mus musculus 10 BAC RP23-320A6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205006 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 142 tcacagcccacacaagcgcacatacacacactc 174 ||||||| ||||||||| || |||||||||||| Sbjct: 21146 tcacagcacacacaagcacagatacacacactc 21114
>gb|AC152979.2| Mus musculus 10 BAC RP23-325K4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183269 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 142 tcacagcccacacaagcgcacatacacacactc 174 ||||||| ||||||||| || |||||||||||| Sbjct: 134569 tcacagcacacacaagcacagatacacacactc 134537
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 15549950 cgcgtctggctcggcaccttc 15549930
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 6351390 cgcgtctggctcggcaccttc 6351370 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 6335057 cgcgtctggctcggcaccttc 6335037
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 28487728 cgcgtctggctcggcaccttc 28487708
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 12685053 cgcgtctggctcggcaccttc 12685073 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 4354827 cgcgtctggctcggcaccttc 4354807
>ref|NM_200478.2| Danio rerio si:busm1-142b24.3 (si:busm1-142b24.3), mRNA Length = 6185 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 acacacactccaaagaaaacacacg 189 |||||||||||| |||||||||||| Sbjct: 3580 acacacactccatagaaaacacacg 3556
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 37316 cgcgtctggctcggcaccttc 37296
>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050D18, complete sequence Length = 126350 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 42743 cgcgtctggctcggcaccttc 42763
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 368 cgcggtcggcatcggcgcagccggc 392 |||||||||||||||||| |||||| Sbjct: 2419818 cgcggtcggcatcggcgcggccggc 2419794
>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0453B09 Length = 173688 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 17467 cgcgtctggctcggcaccttc 17447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 1134 cgcgtctggctcggcaccttc 1114
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0663H05 Length = 161938 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 83669 cgcgtctggctcggcaccttc 83649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 67336 cgcgtctggctcggcaccttc 67316
>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0694A04 Length = 141476 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 75100 cgcgtctggctcggcaccttc 75080
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0037D09 Length = 140470 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 53480 cgcgtctggctcggcaccttc 53460
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0618H09 Length = 142306 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 45269 cgcgtctggctcggcaccttc 45249
>dbj|AK119553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C04, full insert sequence Length = 1193 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 422 cgcgtctggctcggcaccttc 442
>dbj|AK111414.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G01, full insert sequence Length = 1164 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 410 cgcgtctggctcggcaccttc 430
>dbj|AK106163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B04, full insert sequence Length = 1193 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 422 cgcgtctggctcggcaccttc 442
>dbj|AK106057.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F09, full insert sequence Length = 1107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 462 cgcgtctggctcggcaccttc 482
>dbj|AK105922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A05, full insert sequence Length = 1190 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 419 cgcgtctggctcggcaccttc 439
>dbj|AK072749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139A06, full insert sequence Length = 1132 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 546 cgcgtctggctcggcaccttc 566
>dbj|AK068688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163J01, full insert sequence Length = 1106 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 463 cgcgtctggctcggcaccttc 483
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cacagcccacacaagcgcaca 163 ||||||||||||||||||||| Sbjct: 86263 cacagcccacacaagcgcaca 86243
>dbj|AK065344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007H05, full insert sequence Length = 1516 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 476 cgcgtctggctcggcaccttc 496
>dbj|AK060090.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A04, full insert sequence Length = 1241 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 388 cgcgtctggctcggcaccttc 408
>gb|U91857.1|SHU91857 Stylosanthes hamata ethylene-responsive element binding protein homolog gene, complete cds Length = 1018 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 213 cgcgtctggctcggcaccttc 233
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cgcgtctggctcggcaccttc 486 ||||||||||||||||||||| Sbjct: 15558191 cgcgtctggctcggcaccttc 15558171
>emb|AL645543.13| Mouse DNA sequence from clone RP23-204P15 on chromosome X, complete sequence Length = 188023 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 160 cacatacacacactccaaagaaaacacac 188 ||||||||||||| ||||| ||||||||| Sbjct: 102010 cacatacacacacgccaaacaaaacacac 101982
>emb|AL606924.14| Mouse DNA sequence from clone RP23-18M2 on chromosome 4, complete sequence Length = 180444 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 cacacaagcgcacatacacacactc 174 ||||||||| ||||||||||||||| Sbjct: 105894 cacacaagcacacatacacacactc 105870
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence Length = 168316 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaacaaagaaaatcaacaag 217 |||||||||||||||||||| Sbjct: 56918 aaacaaagaaaatcaacaag 56899
>gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin biosynthesis gene cluster, complete sequence Length = 75439 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 486 cccggatcaggactcggcggcgcgtgcctacg 517 |||||||| |||| |||||| ||||||||||| Sbjct: 51955 cccggatccggacgcggcggggcgtgcctacg 51986
>gb|AY785904.1| Triticum monococcum cultivar DV92 TmCBF7 (CBF7) mRNA, complete cds Length = 1067 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 420 tctggctcggcaccttcccg 439
>ref|NM_188283.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 687 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 209 tctggctcggcaccttcccg 228
>ref|XM_467125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 864 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 368 tctggctcggcaccttcccg 387
>ref|NM_183713.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttcccg 489 ||||||||||||||||||| |||| Sbjct: 217 cgcgtctggctcggcacctacccg 240
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cacgctcgcgtctggctcgg 479 |||||||||||||||||||| Sbjct: 1031778 cacgctcgcgtctggctcgg 1031759
>gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome 9, complete sequence Length = 235852 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacact 173 |||||||| ||||||||||||||| Sbjct: 84210 cacacaagtgcacatacacacact 84233
>gb|AY508486.1| Bacteriophage 77, complete genome Length = 41708 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 18393 caagaaaataaagaaaatcaacaa 18416
>gb|AC131105.4| Mus musculus BAC clone RP23-280N9 from chromosome 19, complete sequence Length = 225527 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gccaagaaaacaaagaaaat 210 |||||||||||||||||||| Sbjct: 180402 gccaagaaaacaaagaaaat 180383
>gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome 19, complete sequence Length = 237854 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gccaagaaaacaaagaaaat 210 |||||||||||||||||||| Sbjct: 13554 gccaagaaaacaaagaaaat 13535
>gb|AF487344.3| Helicobacter pylori strain PeCan18B plasticity zone, containing type IV secretion system number three (tfs3) gene cluster, complete sequence Length = 56651 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gccaagaaaacaaagaaaat 210 |||||||||||||||||||| Sbjct: 44275 gccaagaaaacaaagaaaat 44294
>gb|AC004787.1|HUAC004787 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-952F10, complete sequence Length = 216021 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 acacaagcgcacatacacacactc 174 |||||||| ||||||||||||||| Sbjct: 120124 acacaagcacacatacacacactc 120147
>ref|XM_726040.1| Plasmodium yoelii yoelii str. 17XNL splicing factor (PY03158) partial mRNA Length = 1506 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aagaaaacaaagaaaatcaa 213 |||||||||||||||||||| Sbjct: 1239 aagaaaacaaagaaaatcaa 1258
>gb|BC013974.2| Homo sapiens syndecan 3 (N-syndecan), mRNA (cDNA clone MGC:12759 IMAGE:4121937), complete cds Length = 3563 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 1119 tcccacagctaccacctcat 1100
>gb|AY345232.1| Oryza sativa transcription factor Rap212 mRNA, complete cds Length = 1109 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 454 tctggctcggcaccttcccg 473
>ref|NM_204948.1| Gallus gallus lunatic fringe homolog (Drosophila) (LFNG), mRNA Length = 2770 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catcccacagctaccacctc 21 |||||||||||||||||||| Sbjct: 2649 catcccacagctaccacctc 2630
>emb|AL445235.30| Human DNA sequence from clone RP1-65J11 on chromosome 1 Contains the 5' end of the PUM1 gene for pumilio homolog 1 (Drosophila), the SDC3 gene for syndecan 3 (N-syndecan), two novel genes and a CpG island, complete sequence Length = 167478 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 42819 tcccacagctaccacctcat 42838
>gb|AY339374.1| Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds Length = 829 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 278 tctggctcggcaccttcccg 297
>emb|AL353679.18| Human DNA sequence from clone RP3-418C23 on chromosome 6 Contains the 5'end of a novel gene, a novel gene and a CpG island, complete sequence Length = 100111 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 acacacactccaaagaaaacacac 188 |||||||||||||| ||||||||| Sbjct: 7920 acacacactccaaacaaaacacac 7943
>emb|AL136107.12| Human DNA sequence from clone RP1-157N22 on chromosome 6q22.32-23.2 Contains the 3' end of a variant of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 73886 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 cacacaagcgcacatacacacact 173 |||||||||||||| ||||||||| Sbjct: 25930 cacacaagcgcacacacacacact 25907
>emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F13 on chromosome Xq25-26.2 Contains two seven transmembrane helix receptor pseudogenes and the gene for a novel protein similar to part of hepatoma-derived growth factor (high-mobility group protein 1-like) (HDGF), complete sequence Length = 106465 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 agagcagcaactcatcttaatctg 65 |||||||||||||||||| ||||| Sbjct: 72089 agagcagcaactcatctttatctg 72112
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence Length = 167209 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aaacaaagaaaatcaacaag 217 |||||||||||||||||||| Sbjct: 84416 aaacaaagaaaatcaacaag 84435
>gb|AC162917.3| Mus musculus BAC clone RP23-379N7 from chromosome 9, complete sequence Length = 189606 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 160 cacatacacacactccaaagaaaacaca 187 ||||||||||||||||||| || ||||| Sbjct: 179286 cacatacacacactccaaaaaacacaca 179313
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ctcgcggtcggcatcggcgc 385 |||||||||||||||||||| Sbjct: 225039 ctcgcggtcggcatcggcgc 225020
>gb|AF424783.1| Staphylococcus aureus phage phi 13, complete genome Length = 42722 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 35988 caagaaaataaagaaaatcaacaa 36011
>gb|DQ353852.1| Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds Length = 1043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 362 tctggctcggcaccttcccg 381
>gb|AC093669.4| Homo sapiens BAC clone RP11-540E16 from 4, complete sequence Length = 96120 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacact 173 |||||||||||||| ||||||||| Sbjct: 37242 cacacaagcgcacacacacacact 37265
>ref|XM_944729.1| PREDICTED: Homo sapiens syndecan 3 (N-syndecan), transcript variant 4 (SDC3), mRNA Length = 3488 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 1113 tcccacagctaccacctcat 1094
>ref|XM_944727.1| PREDICTED: Homo sapiens syndecan 3 (N-syndecan), transcript variant 3 (SDC3), mRNA Length = 4881 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 825 tcccacagctaccacctcat 806
>ref|XM_940667.1| PREDICTED: Homo sapiens syndecan 3 (N-syndecan), transcript variant 2 (SDC3), mRNA Length = 6391 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 2335 tcccacagctaccacctcat 2316
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 cgcggtcggcatcggcgcagccgg 391 |||||||||||||||||| ||||| Sbjct: 3664553 cgcggtcggcatcggcgcggccgg 3664530
>gb|AC123664.15| Mus musculus chromosome 5, clone RP23-224P16, complete sequence Length = 226777 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gcacatacacacactccaaa 178 |||||||||||||||||||| Sbjct: 160943 gcacatacacacactccaaa 160924
>gb|AF248634.1|AF248634 Homo sapiens syndecan 3 (SDC3) mRNA, complete cds Length = 1463 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 1065 tcccacagctaccacctcat 1046
>emb|CR406457.1| Gallus gallus finished cDNA, clone ChEST952m19 Length = 1225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catcccacagctaccacctc 21 |||||||||||||||||||| Sbjct: 1140 catcccacagctaccacctc 1121
>emb|CR406088.1| Gallus gallus finished cDNA, clone ChEST967k6 Length = 844 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catcccacagctaccacctc 21 |||||||||||||||||||| Sbjct: 756 catcccacagctaccacctc 737
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 2038645 caagaaaataaagaaaatcaacaa 2038622
>emb|AL626778.12| Mouse DNA sequence from clone RP23-326E2 on chromosome 4, complete sequence Length = 186208 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacact 173 |||||||||||||| ||||||||| Sbjct: 33945 cacacaagcgcacaaacacacact 33968
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 2091395 caagaaaataaagaaaatcaacaa 2091372
>emb|CR385567.1| Gallus gallus finished cDNA, clone ChEST607p11 Length = 1300 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catcccacagctaccacctc 21 |||||||||||||||||||| Sbjct: 1214 catcccacagctaccacctc 1195
>emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 in linkage group 1, complete sequence Length = 196931 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cacatacacacactccaaag 179 |||||||||||||||||||| Sbjct: 184600 cacatacacacactccaaag 184581
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 26543523 tctggctcggcaccttcccg 26543542
>gb|AC105915.5| Homo sapiens BAC clone RP11-69D13 from 4, complete sequence Length = 178734 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacactccaa 177 |||||| ||||||| ||||||||||||| Sbjct: 97288 cacacacgcgcacacacacacactccaa 97315
>gb|AC015977.9| Homo sapiens BAC clone RP11-527I18 from 2, complete sequence Length = 176625 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cctgagctccacggtggagc 253 |||||||||||||||||||| Sbjct: 1543 cctgagctccacggtggagc 1524
>gb|AC108070.2| Homo sapiens BAC clone RP11-638P8 from 2, complete sequence Length = 92113 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cctgagctccacggtggagc 253 |||||||||||||||||||| Sbjct: 91656 cctgagctccacggtggagc 91637
>gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete sequence Length = 154313 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacact 173 |||||||||||||| ||||||||| Sbjct: 118830 cacacaagcgcacacacacacact 118853
>dbj|AB044554.1| Staphylococcus aureus prophage phiPV83 proviral DNA, complete sequence Length = 45636 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 37641 caagaaaataaagaaaatcaacaa 37664
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 51251 tctggctcggcaccttcccg 51232
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 aaaatacctctatatgtagctaac 109 ||||| |||||||||||||||||| Sbjct: 790459 aaaatccctctatatgtagctaac 790436
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 85904 tctggctcggcaccttcccg 85923
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttcccg 489 ||||||||||||||||||| |||| Sbjct: 106385 cgcgtctggctcggcacctacccg 106408
>dbj|AB007937.1| Homo sapiens mRNA for KIAA0468 protein, partial cds Length = 6400 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 2340 tcccacagctaccacctcat 2321
>dbj|AK111775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G11, full insert sequence Length = 909 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 cgcgtctggctcggcaccttcccg 489 ||||||||||||||||||| |||| Sbjct: 348 cgcgtctggctcggcacctacccg 371
>dbj|AK108873.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C11, full insert sequence Length = 896 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 257 tctggctcggcaccttcccg 276
>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209111 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ccaagaaaacaaagaaaatc 211 |||||||||||||||||||| Sbjct: 115637 ccaagaaaacaaagaaaatc 115656
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 tcgcgtctggctcggcacct 484 |||||||||||||||||||| Sbjct: 180932 tcgcgtctggctcggcacct 180951
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 2132515 caagaaaataaagaaaatcaacaa 2132492
>gb|U91849.1|GGU91849 Gallus gallus lunatic fringe mRNA, complete cds Length = 2770 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catcccacagctaccacctc 21 |||||||||||||||||||| Sbjct: 2649 catcccacagctaccacctc 2630
>emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in linkage group 1, complete sequence Length = 272535 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cacatacacacactccaaag 179 |||||||||||||||||||| Sbjct: 206819 cacatacacacactccaaag 206800
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tctggctcggcaccttcccg 489 |||||||||||||||||||| Sbjct: 249116 tctggctcggcaccttcccg 249135
>emb|AL807807.11| Mouse DNA sequence from clone RP23-284L15 on chromosome 4, complete sequence Length = 171570 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cacatacacacactccaaag 179 |||||||||||||||||||| Sbjct: 62011 cacatacacacactccaaag 61992
>ref|NM_014654.2| Homo sapiens syndecan 3 (N-syndecan) (SDC3), mRNA Length = 1463 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccacagctaccacctcat 23 |||||||||||||||||||| Sbjct: 1065 tcccacagctaccacctcat 1046
>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence Length = 182075 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 cacatacacacactccaaagaaaacaca 187 ||||||||||||||||||| || ||||| Sbjct: 109792 cacatacacacactccaaaaaacacaca 109765
>emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 in linkage group 17, complete sequence Length = 195606 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 cacacaagcgcacatacacacact 173 |||||||||||||| ||||||||| Sbjct: 129152 cacacaagcgcacacacacacact 129129
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 cacatacacacactccaaagaaaa 183 ||||||||||||| |||||||||| Sbjct: 64269 cacatacacacaccccaaagaaaa 64246
>emb|AJ246201.1|DLU246201 Drosophila lutescens genomic repeat, P1 clone DS06335 Length = 91 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cacacaagcgcacatacacacact 173 ||||||||| |||||||||||||| Sbjct: 33 cacacaagctcacatacacacact 56
>dbj|AB009866.2| Bacteriophage phi PVL proviral DNA, complete sequence Length = 41401 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 caagaaaacaaagaaaatcaacaa 216 |||||||| ||||||||||||||| Sbjct: 18955 caagaaaataaagaaaatcaacaa 18978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,409,717 Number of Sequences: 3902068 Number of extensions: 4409717 Number of successful extensions: 146361 Number of sequences better than 10.0: 141 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145120 Number of HSP's gapped (non-prelim): 1237 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
