ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP107_MOUSE (Q8BUV8) Protein GPR107 precursor 30 7.1
2GP107_HUMAN (Q5VW38) Protein GPR107 precursor (Lung seven transm... 30 7.1

>GP107_MOUSE (Q8BUV8) Protein GPR107 precursor|
          Length = 551

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +1

Query: 424 FPISHPDE---YSLFFANCAPETAVTMEVRTDMYNTNLD--GSKDYLSVGQAPVPTIYAF 588
           F IS  D+   YSL+F  C+       E  +   N  +       YLS G+ P+P +Y  
Sbjct: 208 FNISTDDQEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEKNPNSYLSAGEIPLPKLYVS 267

Query: 589 CAL 597
            AL
Sbjct: 268 MAL 270



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>GP107_HUMAN (Q5VW38) Protein GPR107 precursor (Lung seven transmembrane|
           receptor 1)
          Length = 600

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +1

Query: 424 FPISHPDE---YSLFFANCA----PETAVTMEVRTDMYNTNLDGSKDYLSVGQAPVPTIY 582
           F IS  D+   YSL+F  C     P    T  +  ++   N D    YLS G+ P+P +Y
Sbjct: 210 FNISTDDQEGLYSLYFHKCLGKELPSDKFTFSLDIEITEKNPDS---YLSAGEIPLPKLY 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,808,597
Number of Sequences: 219361
Number of extensions: 478479
Number of successful extensions: 1657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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