ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40d04 |
|---|---|
| Clone Library Name | barley_pub |
>CJ006_HUMAN (Q8IX21) Protein C10orf6| Length = 1173 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Frame = -2 Query: 588 QRRQDEQHEVLLLHENNEKCPHQRQKHDVDD-----LQDVDEGEREQGALQLRLSFPEEH 424 + R E+ + L +HENNEK R K + D + + D +L R S H Sbjct: 167 KHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHH 226 Query: 423 PEGSTL 406 PE S L Sbjct: 227 PEESPL 232
>LAP4_HUMAN (Q14160) LAP4 protein (Scribble homolog protein) (hScrib)| Length = 1630 Score = 33.1 bits (74), Expect = 0.62 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +3 Query: 450 AEGPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPGVA 587 AEG AH L+ GDR+ ++GVD +R H + L A P +A Sbjct: 898 AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIA 943
>IRX4_CHICK (Q9YGS0) Iroquois-class homeodomain protein IRX-4 (Iroquois| homeobox protein 4) Length = 485 Score = 32.7 bits (73), Expect = 0.81 Identities = 13/56 (23%), Positives = 27/56 (48%) Frame = -2 Query: 588 QRRQDEQHEVLLLHENNEKCPHQRQKHDVDDLQDVDEGEREQGALQLRLSFPEEHP 421 + + Q + + + E + ++ ++ DL+D+D E E ++R FP HP Sbjct: 226 EEEECSQEDAMKSEKAEEPTGKEEKELELSDLEDLDAAESESSECEMRRPFPHPHP 281
>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)| Length = 1612 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 450 AEGPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPGVA 587 AEG AH L+ GDR+ ++GVD +R H + L A P ++ Sbjct: 884 AEGGAAHRAGTLQVGDRVLSINGVDMTEARHDHAVSLLTAASPTIS 929
>FLHA_HELPJ (Q9ZM40) Flagellar biosynthesis protein flhA| Length = 733 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 151 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 318 AST T+L +G L Q L + A +T D+A KL+ ++ N +K L++ G Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302 Query: 319 AGYLLFAVV 345 A LLFA + Sbjct: 303 ANLLLFATI 311
>CJ006_PONPY (Q5REF4) Protein C10orf6 homolog| Length = 1174 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = -2 Query: 582 RQDEQHEVLLLHENNEKCPHQRQKHDVDD-----LQDVDEGEREQGALQLRLSFPEEHPE 418 R E+ + L +HENNEK R K + D + + D + +L R S HP Sbjct: 169 RSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFKNSSRSLSSRSSLSRHHPG 228 Query: 417 GSTL 406 S L Sbjct: 229 ESPL 232
>IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Iroquois| homeobox protein 3) (Homeodomain protein IRXB1) Length = 501 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/62 (37%), Positives = 27/62 (43%) Frame = +3 Query: 360 PDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPGDRLHRVSGVDGGTSR 539 P P P H L +L A +L G P A G PA A RP + +GGT R Sbjct: 416 PPPGPRLHPLSLLGSAPPHLLGLP-----GAAGHPAAAAAFARPAE-------PEGGTDR 463 Query: 540 CS 545 CS Sbjct: 464 CS 465
>DLG4_RAT (P31016) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPG 581 G PA LR GD++ V+GVD SHE+AA+ + + G Sbjct: 344 GGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNAG 383
>DLG4_MOUSE (Q62108) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPG 581 G PA LR GD++ V+GVD SHE+AA+ + + G Sbjct: 344 GGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNAG 383
>DLG4_HUMAN (P78352) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPG 581 G PA LR GD++ V+GVD SHE+AA+ + + G Sbjct: 344 GGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNAG 383
>RN146_MOUSE (Q9CZW6) RING finger protein 146| Length = 359 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -2 Query: 195 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 61 L G+ AE HRG G++D E P +GR D + E E S Sbjct: 254 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSVEETESDAS 293
>MURA_SYNEL (Q8DKS7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 439 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 16/63 (25%) Frame = +1 Query: 109 RNRGLFIAVGAIVIASTTVLLLGSDLA---------------VQPLADE-IQLDVKALNS 240 +N L + GA++ A TT+L DLA VQ L E I +D ALN+ Sbjct: 34 KNSALVLMAGALLAADTTILRAVPDLADIRRLGEILQALGVKVQRLGSEAIAIDATALNT 93 Query: 241 TDP 249 DP Sbjct: 94 NDP 96
>DCMR_METDI (P45876) Transcriptional repressor dcmR| Length = 265 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +1 Query: 220 DVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFATVL--- 390 D+ LN+T PG K+++E+ D + + + G L+F + + +L + Sbjct: 128 DICFLNATQPGKAHILKVLREVYPDVHKAIKD--GQLIFPALKRNKAEMLDQLEEMFLKA 185 Query: 391 TYSGEQR 411 TYSGEQ+ Sbjct: 186 TYSGEQK 192
>FLHA_HELPY (O06758) Flagellar biosynthesis protein flhA| Length = 733 Score = 30.4 bits (67), Expect = 4.0 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 151 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 318 AST T+L +G L Q L + A +T D+A KL+ ++ N +K L++ G Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302 Query: 319 AGYLLFAVV 345 A LLFA + Sbjct: 303 AILLLFATI 311
>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2| (EC 2.7.11.1) Length = 1798 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = +3 Query: 357 RPDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPG 494 RP PPP R D ++RAA Q P PP RL R G Sbjct: 9 RPQPPPPDRREDGVQRAAELSQSLPPR----RRAPPGRQRLEERTG 50
>FLGK_ECOLI (P33235) Flagellar hook-associated protein 1 (HAP1)| Length = 546 Score = 29.6 bits (65), Expect = 6.9 Identities = 23/71 (32%), Positives = 36/71 (50%) Frame = +1 Query: 49 NPSTGPSFFNFLKEGVLLPTRNRGLFIAVGAIVIASTTVLLLGSDLAVQPLADEIQLDVK 228 N G FF K VL T+N+G +A+GA V ++ V L +D + ++ Q+ Sbjct: 319 NGDAGEDFFAIGKPAVLQNTKNKG-DVAIGATVTDASAV--LATDYKISFDNNQWQVTRL 375 Query: 229 ALNSTDPGSPD 261 A N+T +PD Sbjct: 376 ASNTTFTVTPD 386
>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 265 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = -3 Query: 350 LMTTANRRYPAPSSRSSLASFWISCTSLA*SGLPGSVLFSALTSSWISSARGWTARSL-- 177 ++ A RR + ++RSS F S ++ P +LTSS++ RG+++ S+ Sbjct: 1 MLRVAGRRLSSSAARSSSTFFTRSSFTVTDDSSPARSPSPSLTSSFLDQIRGFSSNSVSP 60 Query: 176 PRRSTVVEAMTMAPTAMKSPRLRV 105 + +V + A+K+P ++ Sbjct: 61 AHQLGLVSDLPATVAAIKNPSSKI 84
>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 590 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = -2 Query: 219 ELDLVGEGLDGEVAAEEEHRGRGDDDGADCYEE---------PPVAGREEDAF 88 E D E ++ +AEEE GD+D A+ + PPVAG E +F Sbjct: 65 ESDQADEDVEAANSAEEEEEEGGDEDNAENNTDLPNGGQLTLPPVAGAEAQSF 117
>RN146_RAT (Q5XIK5) RING finger protein 146| Length = 352 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -2 Query: 195 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 61 L G+ AE HRG G++D E P +GR D E E S Sbjct: 252 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSTEETESDAS 291
>MTRA_METKA (O32867) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 248 Score = 29.6 bits (65), Expect = 6.9 Identities = 23/99 (23%), Positives = 44/99 (44%) Frame = +1 Query: 205 DEIQLDVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFAT 384 DEI ++ DPG+ + + ++ + +E L E AG + A ++ RI + Sbjct: 146 DEIVKAIEECVEKDPGAYEEGPMTISLEEEEEEELAEVAGMPVSAETVTVEYRINDVRVG 205 Query: 385 VLTYSGEQRTTFRVLLGKAKAQLKGPLLTLAFVYVLEIV 501 V + QR L G+ L G + + F+++ +V Sbjct: 206 VKSIGAMQRYMAGYLSGRTMGLLIGIISGMIFLFLPMVV 244
>DLG1_HUMAN (Q12959) Disks large homolog 1 (Synapse-associated protein 97)| (SAP-97) (hDlg) Length = 904 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPGVAAS 593 G PA LR GDR+ V+ VD SHE+AA + + G A + Sbjct: 497 GGPADLSGELRKGDRIISVNSVD--LRAASHEQAAAALKNAGQAVT 540
>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1107 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -2 Query: 204 GEGLDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRSR 58 GEG + + E++ G+DD AD E V G+ E A L E+++ + + Sbjct: 88 GEGDEESQSTEDDEAVVGEDDDADEAEGGAVVGKREKARLKEMQKLKKQ 136
>DLG1_MOUSE (Q811D0) Disks large homolog 1 (Synapse-associated protein 97)| (SAP-97) (Embryo-dlg/synapse-associated protein 97) (E-dlg/SAP97) Length = 905 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPGVAAS 593 G PA LR GDR+ V+ VD SHE+AA + + G A + Sbjct: 497 GGPADLSGELRKGDRIISVNSVD--LRAASHEQAAAALKNAGQAVT 540
>GRC3_GIBZE (Q4IR18) Protein GRC3| Length = 796 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -3 Query: 254 LPGSVLFSALTSSWISSARGWTARSLPRRSTVVEA-MTMAPTAMKSPRLRVGRRTPSFRK 78 L G+ L+ + T W+ + ++P T+ E + + P ++GR +P FRK Sbjct: 163 LAGATLYPSETIEWVHAPH---CHAVPMLRTIDETILELHPDRNARGIRQLGRLSPLFRK 219 Query: 77 LKNEGP 60 + NE P Sbjct: 220 IWNESP 225
>DLG1_RAT (Q62696) Disks large homolog 1 (Synapse-associated protein 97)| (SAP-97) Length = 911 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 456 GPPAHARLRLRPGDRLHRVSGVDGGTSRCSHEEAALRVAHPGVAAS 593 G PA LR GDR+ V+ VD SHE+AA + + G A + Sbjct: 496 GGPADLSGELRKGDRIISVNSVD--LRAASHEQAAAALKNAGQAVT 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,123,507 Number of Sequences: 219361 Number of extensions: 1217005 Number of successful extensions: 4821 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4812 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
