Clone Name | bart40d03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | REMO_SOLTU (P93788) Remorin (pp34) | 68 | 2e-11 | 2 | GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane prote... | 30 | 3.4 | 3 | E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expresse... | 29 | 10.0 |
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>REMO_SOLTU (P93788) Remorin (pp34)| Length = 198 Score = 67.8 bits (164), Expect = 2e-11 Identities = 42/82 (51%), Positives = 46/82 (56%) Frame = +2 Query: 260 DSXALVVVEKVADEPVAEKLTDEKAAHGGSNDRDLALARVESEKRNSLIKAWXXXXXXXX 439 DS ALVVVE A EP EK GS DRD LARV +EKR SLIKAW Sbjct: 52 DSKALVVVETKAPEPADEKKE-------GSIDRDAVLARVATEKRVSLIKAWEESEKSKA 104 Query: 440 XXXXXXXVSAILSWENTKKANI 505 VSAI +WEN+KKAN+ Sbjct: 105 ENKAQKKVSAIGAWENSKKANL 126
>GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane protein GP73)| Length = 401 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/36 (44%), Positives = 25/36 (69%) Frame = +2 Query: 296 DEPVAEKLTDEKAAHGGSNDRDLALARVESEKRNSL 403 DE AE TD++AA G NDR++ + VE +KR+++ Sbjct: 354 DENEAESETDKQAALAG-NDRNIDVFNVEDQKRDTI 388
>E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expressed protein 4.1)| (4.1G) Length = 988 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 263 SXALVVVEKVADEPVAEKLTDEKAAHGGSNDRD 361 + L V + + VA+KL EK AHGG+ ++D Sbjct: 788 ASVLPVETEAQEHVVAQKLPGEKGAHGGTAEQD 820 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,718,571 Number of Sequences: 219361 Number of extensions: 352829 Number of successful extensions: 941 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 939 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)