ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REMO_SOLTU (P93788) Remorin (pp34) 68 2e-11
2GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane prote... 30 3.4
3E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expresse... 29 10.0

>REMO_SOLTU (P93788) Remorin (pp34)|
          Length = 198

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 42/82 (51%), Positives = 46/82 (56%)
 Frame = +2

Query: 260 DSXALVVVEKVADEPVAEKLTDEKAAHGGSNDRDLALARVESEKRNSLIKAWXXXXXXXX 439
           DS ALVVVE  A EP  EK         GS DRD  LARV +EKR SLIKAW        
Sbjct: 52  DSKALVVVETKAPEPADEKKE-------GSIDRDAVLARVATEKRVSLIKAWEESEKSKA 104

Query: 440 XXXXXXXVSAILSWENTKKANI 505
                  VSAI +WEN+KKAN+
Sbjct: 105 ENKAQKKVSAIGAWENSKKANL 126



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>GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane protein GP73)|
          Length = 401

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 296 DEPVAEKLTDEKAAHGGSNDRDLALARVESEKRNSL 403
           DE  AE  TD++AA  G NDR++ +  VE +KR+++
Sbjct: 354 DENEAESETDKQAALAG-NDRNIDVFNVEDQKRDTI 388



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>E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expressed protein 4.1)|
           (4.1G)
          Length = 988

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 263 SXALVVVEKVADEPVAEKLTDEKAAHGGSNDRD 361
           +  L V  +  +  VA+KL  EK AHGG+ ++D
Sbjct: 788 ASVLPVETEAQEHVVAQKLPGEKGAHGGTAEQD 820


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,718,571
Number of Sequences: 219361
Number of extensions: 352829
Number of successful extensions: 941
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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