ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2605_MYCBO (P65020) Hypothetical protein Mb2605 30 3.6
2Y2575_MYCTU (P65019) Hypothetical protein Rv2575/MT2651 30 3.6
3CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 30 4.7

>Y2605_MYCBO (P65020) Hypothetical protein Mb2605|
          Length = 293

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 449 GRRPGGAQGVRGSGVRLQLQRD 514
           GR   GAQG  GSGVR +LQ D
Sbjct: 180 GRAQQGAQGAAGSGVRTELQAD 201



to top

>Y2575_MYCTU (P65019) Hypothetical protein Rv2575/MT2651|
          Length = 293

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 449 GRRPGGAQGVRGSGVRLQLQRD 514
           GR   GAQG  GSGVR +LQ D
Sbjct: 180 GRAQQGAQGAAGSGVRTELQAD 201



to top

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 5   PSSKATERDSGRRGASHRV--RTASEQASELNDRRHRHDVELRLQPRPVRVDDGG 163
           PS ++    S R+G+  R   R++S +A     RRH     LR QP P R  D G
Sbjct: 93  PSRRSVRSPSPRQGSPARRVDRSSSPRARSPPPRRHSRSPPLRGQPPPPRHRDAG 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,484,061
Number of Sequences: 219361
Number of extensions: 409259
Number of successful extensions: 2186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2186
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top