ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5621_ARATH (O81488) PHD finger protein At5g26210 196 4e-50
2ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 32 1.7
3ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 32 1.7
4ATG11_NEUCR (Q7S055) Autophagy-related protein 11 30 4.9
5ISY1_KLULA (Q6CJQ3) Pre-mRNA-splicing factor ISY1 30 6.4

>Y5621_ARATH (O81488) PHD finger protein At5g26210|
          Length = 255

 Score =  196 bits (498), Expect = 4e-50
 Identities = 89/141 (63%), Positives = 115/141 (81%), Gaps = 2/141 (1%)
 Frame = +1

Query: 151 PRTVEDIFKDYRARRNAIHRALTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVP 330
           PRTVE++F+D++ RR  + +ALT DV+EF+  CDPEKENLCLYG+ NE WEV LPAEEVP
Sbjct: 9   PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVP 68

Query: 331 TELPEPALGINFARDGMKRSDWLALVAVHSDSWLVSVAFYYAAR--LTRNDRKRLFGMMN 504
            ELPEP LGINFARDGM   DWL+LVAVHSD+WL++VAF++ AR    + DRKRLF M+N
Sbjct: 69  PELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVN 128

Query: 505 DLPTVYEVISGMRQSKERDRS 567
           DLPT++EV++G  + + +D+S
Sbjct: 129 DLPTIFEVVAGTAKKQGKDKS 149



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>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein|
          Length = 610

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 LTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVPTELPEPA 351
           +T ++EEFY+ CD E +   L     + W V     EVP   P+PA
Sbjct: 282 ITKEIEEFYSLCD-EMDLQALPLPLEDGWTVDASNFEVPCSSPQPA 326



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>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein|
          Length = 612

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 LTHDVEEFYAQCDPEKENLCLYGYANEAWEVALPAEEVPTELPEPA 351
           +T ++EEFY+ CD E +   L     + W V     EVP   P+PA
Sbjct: 287 ITKEIEEFYSLCD-EMDLQALPLPLEDGWTVDASNFEVPCSSPQPA 331



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>ATG11_NEUCR (Q7S055) Autophagy-related protein 11|
          Length = 1300

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 EAWEVALPAEEVPTELPEPALGI 360
           + WE   PA++VPTELP+   GI
Sbjct: 685 DIWECLAPADDVPTELPDLLEGI 707



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>ISY1_KLULA (Q6CJQ3) Pre-mRNA-splicing factor ISY1|
          Length = 237

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 475 DRKRLFGMMNDLPTVYEVISGMRQSKERDRSG 570
           D KR FG   +LP V +++   ++ +E++RSG
Sbjct: 120 DGKRYFGRALELPEVQKLLRESKEQREKERSG 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,457,124
Number of Sequences: 219361
Number of extensions: 809141
Number of successful extensions: 2206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2205
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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