Clone Name | bart40b04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full insert sequence Length = 1254 Score = 452 bits (228), Expect = e-124 Identities = 393/448 (87%) Strand = Plus / Plus Query: 115 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 174 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191 Query: 175 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 234 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 192 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 251 Query: 235 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 294 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 252 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 311 Query: 295 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 354 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 312 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 371 Query: 355 cgcgacgcccgcctcacgcaccacgtcctccaccaggcccacccctccgccatcgtcgtg 414 |||||||| || || |||||||||| ||||||||||| ||||| | |||||||||||| Sbjct: 372 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcacccggcggccatcgtcgtg 431 Query: 415 gagatcgcctgcacccgctccgccgaggagctcctcggcgcgcgcaaggcctacatggcg 474 |||||||| |||||||| | || ||||||||||||||||| |||||||| ||| |||| Sbjct: 432 gagatcgcttgcacccggacggcggaggagctcctcggcgctcgcaaggcgtaccaggcg 491 Query: 475 ctcttccaccactccctcgaggaggacgtcgcctaccgcgccaaggacaagccctactgc 534 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 492 ctgttccaccactccctcgaggaggacgtcgcctaccgcgccagggacaagccctactgc 551 Query: 535 agcctgctggtggggctggtgagcgcgt 562 |||||||||| |||||||||||||||| Sbjct: 552 ggcctgctggtcgggctggtgagcgcgt 579
>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full insert sequence Length = 1254 Score = 452 bits (228), Expect = e-124 Identities = 393/448 (87%) Strand = Plus / Plus Query: 115 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 174 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 133 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 192 Query: 175 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 234 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 193 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 252 Query: 235 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 294 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 253 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 312 Query: 295 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 354 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 313 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 372 Query: 355 cgcgacgcccgcctcacgcaccacgtcctccaccaggcccacccctccgccatcgtcgtg 414 |||||||| || || |||||||||| ||||||||||| ||||| | |||||||||||| Sbjct: 373 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcacccggcggccatcgtcgtg 432 Query: 415 gagatcgcctgcacccgctccgccgaggagctcctcggcgcgcgcaaggcctacatggcg 474 |||||||| |||||||| | || ||||||||||||||||| |||||||| ||| |||| Sbjct: 433 gagatcgcttgcacccggacggcggaggagctcctcggcgctcgcaaggcgtaccaggcg 492 Query: 475 ctcttccaccactccctcgaggaggacgtcgcctaccgcgccaaggacaagccctactgc 534 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 493 ctgttccaccactccctcgaggaggacgtcgcctaccgcgccagggacaagccctactgc 552 Query: 535 agcctgctggtggggctggtgagcgcgt 562 |||||||||| |||||||||||||||| Sbjct: 553 ggcctgctggtcgggctggtgagcgcgt 580
>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full insert sequence Length = 1284 Score = 452 bits (228), Expect = e-124 Identities = 393/448 (87%) Strand = Plus / Plus Query: 115 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 174 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191 Query: 175 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 234 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 192 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 251 Query: 235 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 294 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 252 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 311 Query: 295 gccgccgagttctcccggttcaagaacctgatggtgctgtgggcgatgcacccgtgggag 354 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 312 gccgccgagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggag 371 Query: 355 cgcgacgcccgcctcacgcaccacgtcctccaccaggcccacccctccgccatcgtcgtg 414 |||||||| || || |||||||||| ||||||||||| ||||| | |||||||||||| Sbjct: 372 cgcgacgcgcggctggcgcaccacgtgctccaccaggcgcacccggcggccatcgtcgtg 431 Query: 415 gagatcgcctgcacccgctccgccgaggagctcctcggcgcgcgcaaggcctacatggcg 474 |||||||| |||||||| | || ||||||||||||||||| |||||||| ||| |||| Sbjct: 432 gagatcgcttgcacccggacggcggaggagctcctcggcgctcgcaaggcgtaccaggcg 491 Query: 475 ctcttccaccactccctcgaggaggacgtcgcctaccgcgccaaggacaagccctactgc 534 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 492 ctgttccaccactccctcgaggaggacgtcgcctaccgcgccagggacaagccctactgc 551 Query: 535 agcctgctggtggggctggtgagcgcgt 562 |||||||||| |||||||||||||||| Sbjct: 552 ggcctgctggtcgggctggtgagcgcgt 579
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 305 bits (154), Expect = 8e-80 Identities = 223/246 (90%) Strand = Plus / Plus Query: 317 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcacgcacc 376 |||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| Sbjct: 278 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 337 Query: 377 acgtcctccaccaggcccacccctccgccatcgtcgtggagatcgcctgcacccgctccg 436 |||| ||||||||||| ||||| | |||||||||||||||||||| |||||||| | | Sbjct: 338 acgtgctccaccaggcgcacccggcggccatcgtcgtggagatcgcttgcacccggacgg 397 Query: 437 ccgaggagctcctcggcgcgcgcaaggcctacatggcgctcttccaccactccctcgagg 496 | ||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct: 398 cggaggagctcctcggcgctcgcaaggcgtaccaggcgctgttccaccactccctcgagg 457 Query: 497 aggacgtcgcctaccgcgccaaggacaagccctactgcagcctgctggtggggctggtga 556 ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| Sbjct: 458 aggacgtcgcctaccgcgccagggacaagccctactgcggcctgctggtcgggctggtga 517 Query: 557 gcgcgt 562 |||||| Sbjct: 518 gcgcgt 523 Score = 139 bits (70), Expect = 1e-29 Identities = 163/194 (84%) Strand = Plus / Plus Query: 115 accaaggccttctcaggtctggggggtctgggcgtggacgagcggacgatggtggcggcg 174 |||| |||||||||||| || || || || ||||||||||||| | |||||||| ||||| Sbjct: 25 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 84 Query: 175 ctggcgaactggcggaagcagccggagaagcggtcggggttccggaagagcttcccgggg 234 ||||| || ||||| | |||||||||||||| ||| |||||| ||||||||||| || Sbjct: 85 ctggccaagtggcgcaggcagccggagaagctgtccgggttcaggaagagcttcaatggc 144 Query: 235 ctgttcaaggagcacggcggcgtgatggagcggtgcgaggacgagtacatgctgcacctg 294 | |||||||| || |||||||| || ||| ||||||||| ||||||||||| ||||| Sbjct: 145 ttcttcaaggatcatggcggcgtcatcgagaagtgcgaggaggagtacatgctccacctc 204 Query: 295 gccgccgagttctc 308 |||||||||||||| Sbjct: 205 gccgccgagttctc 218
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 266 bits (134), Expect = 7e-68 Identities = 197/218 (90%) Strand = Plus / Minus Query: 317 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcacgcacc 376 |||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| Sbjct: 144409 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 144350 Query: 377 acgtcctccaccaggcccacccctccgccatcgtcgtggagatcgcctgcacccgctccg 436 |||| ||||||||||| ||||| | |||||||||||||||||||| |||||||| | | Sbjct: 144349 acgtgctccaccaggcgcacccggcggccatcgtcgtggagatcgcttgcacccggacgg 144290 Query: 437 ccgaggagctcctcggcgcgcgcaaggcctacatggcgctcttccaccactccctcgagg 496 | ||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct: 144289 cggaggagctcctcggcgctcgcaaggcgtaccaggcgctgttccaccactccctcgagg 144230 Query: 497 aggacgtcgcctaccgcgccaaggacaagccctactgc 534 ||||||||||||||||||||| |||||||||||||||| Sbjct: 144229 aggacgtcgcctaccgcgccagggacaagccctactgc 144192 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 145 ggcgtggacgagcggacgatggtggcggcgctggcgaactggcggaagcagccggagaag 204 ||||||||||||| | |||||||| |||||||||| || ||||| | ||||||||||||| Sbjct: 144685 ggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccggagaag 144626 Query: 205 cggtcggggttccggaagagcttcccggggctgttcaaggagcacggcggcgtgatggag 264 | ||| |||||| ||||||||||| || | |||||||| || |||||||| || ||| Sbjct: 144625 ctgtccgggttcaggaagagcttcaatggcttcttcaaggatcatggcggcgtcatcgag 144566 Query: 265 cggtgcgaggacgagtacatgctgcacctggccgccgagttctcccggttcaag 318 ||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 144565 aagtgcgaggaggagtacatgctccacctcgccgccgagttctcgcggttcaag 144512 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 538 ctgctggtggggctggtgagcgcgt 562 |||||||| |||||||||||||||| Sbjct: 144090 ctgctggtcgggctggtgagcgcgt 144066
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 266 bits (134), Expect = 7e-68 Identities = 197/218 (90%) Strand = Plus / Minus Query: 317 agaacctgatggtgctgtgggcgatgcacccgtgggagcgcgacgcccgcctcacgcacc 376 |||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| Sbjct: 18351197 agaacctgatggtgatgtgggcgatgcacccgtgggagcgcgacgcgcggctggcgcacc 18351138 Query: 377 acgtcctccaccaggcccacccctccgccatcgtcgtggagatcgcctgcacccgctccg 436 |||| ||||||||||| ||||| | |||||||||||||||||||| |||||||| | | Sbjct: 18351137 acgtgctccaccaggcgcacccggcggccatcgtcgtggagatcgcttgcacccggacgg 18351078 Query: 437 ccgaggagctcctcggcgcgcgcaaggcctacatggcgctcttccaccactccctcgagg 496 | ||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct: 18351077 cggaggagctcctcggcgctcgcaaggcgtaccaggcgctgttccaccactccctcgagg 18351018 Query: 497 aggacgtcgcctaccgcgccaaggacaagccctactgc 534 ||||||||||||||||||||| |||||||||||||||| Sbjct: 18351017 aggacgtcgcctaccgcgccagggacaagccctactgc 18350980 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 145 ggcgtggacgagcggacgatggtggcggcgctggcgaactggcggaagcagccggagaag 204 ||||||||||||| | |||||||| |||||||||| || ||||| | ||||||||||||| Sbjct: 18351473 ggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccggagaag 18351414 Query: 205 cggtcggggttccggaagagcttcccggggctgttcaaggagcacggcggcgtgatggag 264 | ||| |||||| ||||||||||| || | |||||||| || |||||||| || ||| Sbjct: 18351413 ctgtccgggttcaggaagagcttcaatggcttcttcaaggatcatggcggcgtcatcgag 18351354 Query: 265 cggtgcgaggacgagtacatgctgcacctggccgccgagttctcccggttcaag 318 ||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 18351353 aagtgcgaggaggagtacatgctccacctcgccgccgagttctcgcggttcaag 18351300 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 538 ctgctggtggggctggtgagcgcgt 562 |||||||| |||||||||||||||| Sbjct: 18350878 ctgctggtcgggctggtgagcgcgt 18350854
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 157 cggacgatggtggcggcgctggcgaac 183 |||| |||||||||||||||||||||| Sbjct: 17683946 cggaggatggtggcggcgctggcgaac 17683972
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1288_C01 Length = 111223 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 157 cggacgatggtggcggcgctggcgaac 183 |||| |||||||||||||||||||||| Sbjct: 61844 cggaggatggtggcggcgctggcgaac 61870
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence Length = 188193 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 337 gcgatgcacccgtgggagcgcgacgcccgc 366 |||||||||| ||||||||||| ||||||| Sbjct: 79957 gcgatgcacctgtgggagcgcgtcgcccgc 79986
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 ggacgatggtggcggcgctggc 179 |||||||||||||||||||||| Sbjct: 2068018 ggacgatggtggcggcgctggc 2068039
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ccgccatcgtcgtggagatcg 421 ||||||||||||||||||||| Sbjct: 68368 ccgccatcgtcgtggagatcg 68348
>ref|XM_604958.2| PREDICTED: Bos taurus similar to Proteinase activated receptor 1 precursor (PAR-1) (Thrombin receptor) (Coagulation factor II receptor) (LOC526585), mRNA Length = 3515 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gtacatgctgcacctggccgc 299 ||||||||||||||||||||| Sbjct: 573 gtacatgctgcacctggccgc 593
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ccgccatcgtcgtggagatcg 421 ||||||||||||||||||||| Sbjct: 18333003 ccgccatcgtcgtggagatcg 18332983
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ccgccatcgtcgtggagatcg 421 ||||||||||||||||||||| Sbjct: 18492404 ccgccatcgtcgtggagatcg 18492384
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 gctgttcaaggagcacggcggcgtgatg 261 |||||||||||| |||||||||||||| Sbjct: 484028 gctgttcaaggaagacggcggcgtgatg 484055
>gb|AF525118.1| Ornithorhynchus anatinus isolate OranVL18 immunoglobulin lambda light chain mRNA, partial cds Length = 417 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agccggagaagcggtcgggg 213 |||||||||||||||||||| Sbjct: 247 agccggagaagcggtcgggg 228
>ref|XM_450687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgcctgcacccgctccgccg 439 |||||||||||||||||||| Sbjct: 828 cgcctgcacccgctccgccg 809
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gcggcgctggcgaactggcg 188 |||||||||||||||||||| Sbjct: 1613989 gcggcgctggcgaactggcg 1614008
>gb|AY645945.1| Triticum aestivum floral homeotic protein (Q) mRNA, complete cds Length = 1730 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 426 cgaggagctcctcggcgcgc 407
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcccgcctcacgcaccacg 379 |||||||||||||||||||| Sbjct: 3499553 cgcccgcctcacgcaccacg 3499534
>ref|XM_614758.2| PREDICTED: Bos taurus hypothetical LOC534844 (LOC534844), mRNA Length = 1229 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 tgctggtggggctggtgagc 558 |||||||||||||||||||| Sbjct: 901 tgctggtggggctggtgagc 882
>gb|AF389755.1| Uncultured bacterium clone NIW6-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389760.1| Uncultured bacterium clone NIW4-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389784.1| Uncultured bacterium clone NIS13-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389785.1| Uncultured bacterium clone NIS13-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389786.1| Uncultured bacterium clone NIS12-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389787.1| Uncultured bacterium clone NIS12-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389788.1| Uncultured bacterium clone NIS12-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389791.1| Uncultured bacterium clone NIS11-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389795.1| Uncultured bacterium clone NIS10-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389797.1| Uncultured bacterium clone NIS9-2 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF389801.1| Uncultured bacterium clone NIS8-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 137 tgctgcacctggccgccgag 156
>gb|AF438482.1| Homo sapiens non-classical cadherin XB31alpha1 (XB31alpha) mRNA, complete cds Length = 4965 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cacccgctccgccgaggagc 445 |||||||||||||||||||| Sbjct: 119 cacccgctccgccgaggagc 100
>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the 5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1 gene for catenin, beta interacting protein 1, two novel genes, the LZIC gene for leucine zipper and CTNNBIP1 domain containing, the 5' end of the NMNAT1 gene for nicotinamide nucleotide adenylyltransferase 1 and a CpG island, complete sequence Length = 177470 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 cacccgctccgccgaggagc 445 |||||||||||||||||||| Sbjct: 29241 cacccgctccgccgaggagc 29260
>gb|AY113145.1| Tachyglossus aculeatus clone TaacVL134 immunoglobulin lambda light chain mRNA, partial cds Length = 436 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agccggagaagcggtcgggg 213 |||||||||||||||||||| Sbjct: 291 agccggagaagcggtcgggg 272
>gb|AY113116.1| Tachyglossus aculeatus clone TaacVL37 immunoglobulin lambda light chain mRNA, partial cds Length = 453 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agccggagaagcggtcgggg 213 |||||||||||||||||||| Sbjct: 286 agccggagaagcggtcgggg 267
>emb|X63352.1|RCFDXD R.capsulatus fdxD, nifH and nifD (5'end) genes Length = 2423 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 1466 tgctgcacctggccgccgag 1485
>emb|X07866.1|RCNIFH Rhodobacter capsulatus nifH gene Length = 1040 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 268 tgctgcacctggccgccgag 287
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gctggcgaactggcggaagc 193 |||||||||||||||||||| Sbjct: 3862801 gctggcgaactggcggaagc 3862820
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcccgcctcacgcaccacg 379 |||||||||||||||||||| Sbjct: 36405 cgcccgcctcacgcaccacg 36386
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cgcccgcctcacgcaccacg 379 |||||||||||||||||||| Sbjct: 16177 cgcccgcctcacgcaccacg 16158
>ref|NM_014944.3| Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 2, mRNA Length = 5179 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cacccgctccgccgaggagc 445 |||||||||||||||||||| Sbjct: 119 cacccgctccgccgaggagc 100
>ref|NM_001009566.1| Homo sapiens calsyntenin 1 (CLSTN1), transcript variant 1, mRNA Length = 5209 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cacccgctccgccgaggagc 445 |||||||||||||||||||| Sbjct: 119 cacccgctccgccgaggagc 100
>gb|AC091996.3| Homo sapiens chromosome 5 clone RP11-96G10, complete sequence Length = 182797 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tcatcgtctccgtctcctcaaatt 57 ||||| |||||||||||||||||| Sbjct: 167852 tcatcttctccgtctcctcaaatt 167875
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cgatggtggcggcgctggcg 180 |||||||||||||||||||| Sbjct: 3675378 cgatggtggcggcgctggcg 3675359
>gb|DQ140718.1| Uncultured bacterium clone nif1003323U12 dinitrogen reductase-like (nifH) gene, partial sequence Length = 326 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 41 tgctgcacctggccgccgag 60
>gb|DQ140602.1| Uncultured bacterium clone nif1003301M20 dinitrogen reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 41 tgctgcacctggccgccgag 60
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cgcctgcacccgctccgccg 439 |||||||||||||||||||| Sbjct: 12242152 cgcctgcacccgctccgccg 12242171
>gb|AY714341.1| Triticum aestivum subsp. spelta type European floral homeotic protein (Q) gene, complete cds Length = 3585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 298 cgaggagctcctcggcgcgc 279
>gb|AY714340.1| Triticum aestivum subsp. spelta type Iranian floral homeotic protein (Q) gene, complete cds Length = 3588 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 298 cgaggagctcctcggcgcgc 279
>gb|AY714339.1| Triticum turgidum subsp. polonicum floral homeotic protein (Q) gene, complete cds Length = 3588 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 298 cgaggagctcctcggcgcgc 279
>gb|AY702959.1| Triticum turgidum subsp. carthlicum floral homeotic protein (Q) gene, complete cds Length = 3588 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 298 cgaggagctcctcggcgcgc 279
>gb|AY702957.1| Triticum turgidum subsp. dicoccoides floral homeotic protein (Q) gene, complete cds Length = 3732 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 439 cgaggagctcctcggcgcgc 420
>gb|AY702956.1| Triticum aestivum floral homeotic protein (Q) gene, complete cds Length = 3729 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 439 cgaggagctcctcggcgcgc 420
>gb|AY702955.1| Triticum turgidum floral homeotic protein (Q) gene, complete cds Length = 4958 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 cgaggagctcctcggcgcgc 457 |||||||||||||||||||| Sbjct: 456 cgaggagctcctcggcgcgc 437
>ref|XM_234547.3| PREDICTED: Rattus norvegicus amnionless (predicted) (Amn_predicted), mRNA Length = 1596 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ggagaagcggtcggggttccggaagagc 225 ||||||||||||||| || ||||||||| Sbjct: 549 ggagaagcggtcgggattgcggaagagc 522
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 gctggtggggctggtgagcg 559 |||||||||||||||||||| Sbjct: 2204156 gctggtggggctggtgagcg 2204175
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 tcgcctaccgcgccaaggac 522 |||||||||||||||||||| Sbjct: 8948051 tcgcctaccgcgccaaggac 8948070
>dbj|AB079629.1| Rhodovulum strictum nifH gene for nitrogenase, partial cds, strain:JCM 9221 Length = 461 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 161 tgctgcacctggccgccgag 180
>dbj|AB079628.1| Rhodovulum strictum nifH gene for nitrogenase, partial cds, strain:JCM 9220 Length = 461 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 161 tgctgcacctggccgccgag 180
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cgcctgcacccgctccgccg 439 |||||||||||||||||||| Sbjct: 25706 cgcctgcacccgctccgccg 25725
>dbj|AB020718.1| Homo sapiens mRNA for KIAA0911 protein, partial cds Length = 5219 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cacccgctccgccgaggagc 445 |||||||||||||||||||| Sbjct: 153 cacccgctccgccgaggagc 134
>gb|AF052223.1|AF052223 Lolium perenne 4-coumarate--CoA ligase 4CL3 mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ccatcgtcgtggagatcgcc 423 |||||||||||||||||||| Sbjct: 984 ccatcgtcgtggagatcgcc 1003
>dbj|AK108199.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C10, full insert sequence Length = 1057 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgcctgcacccgctccgccg 439 |||||||||||||||||||| Sbjct: 828 cgcctgcacccgctccgccg 809
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 ggagcgcgacgcccgcctcacgca 374 |||||| ||||||||||||||||| Sbjct: 1021928 ggagcgggacgcccgcctcacgca 1021951
>gb|M15270.1|RCANIFHD Rhodobacter capsulatus nifH gene encoding dinitrogenase reductase and nifD gene encoding the alpha subunit of dinitrogenase Length = 2466 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 tgctgcacctggccgccgag 303 |||||||||||||||||||| Sbjct: 191 tgctgcacctggccgccgag 210 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,629,255 Number of Sequences: 3902068 Number of extensions: 3629255 Number of successful extensions: 83231 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82021 Number of HSP's gapped (non-prelim): 1204 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)