>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = -3

Query: 527  HCQEHLIQKIHLNE*QSIHPYXXXXXXXXXXXQSWFCKYYRHQIRSYRQSHGIHQFASRK 348
            H Q+HL Q++H  +    HP                    +HQ +  + +  I Q  S++
Sbjct: 3881 HNQQHLNQQLHAQQ----HPTQK-----------------QHQAQQ-QFNQQIQQHQSQQ 3918

Query: 347  QHEACQMVLAVATRLTLQKKVQEAWQVVQNQARQKQLQKLHQV 219
            QH+  Q   A    L+ Q+   +     Q+QA+Q+QLQ++ ++
Sbjct: 3919 QHQVQQQNQAQQQHLSQQQHQSQQQLNQQHQAQQQQLQQIQKL 3961

>SNAB_MOUSE (P28663) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta) (Brain protein I47)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 356 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 520
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 521 DNELTDL 541
           + EL D+
Sbjct: 132 ETELVDI 138

>SNAB_HUMAN (Q9H115) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 356 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 520
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 521 DNELTDL 541
           + EL D+
Sbjct: 132 ETELVDI 138

>SNAB_BOVIN (P81126) Beta-soluble NSF attachment protein (SNAP-beta)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           beta)
          Length = 298

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 356 MQIDGSHDSVDSFVSDAGSIYK-----TKIDGAKSAATGLTDKDELIVIRSDESSGSDVL 520
           MQ+   HDS  SFV DAG+ YK       I+   +A    TD     +      + +++ 
Sbjct: 73  MQLQSKHDSATSFV-DAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIY 131

Query: 521 DNELTDL 541
           + EL D+
Sbjct: 132 ETELVDI 138

>HES3_MOUSE (Q61657) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 401 QIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQV 267
           Q+RS  + H  HQ   RK  +A  + L+V    +LQ  +Q  W V
Sbjct: 15  QLRSLLERHYSHQIRKRKLEKADILELSVKYMRSLQNSLQGLWPV 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,035,540
Number of Sequences: 219361
Number of extensions: 1036327
Number of successful extensions: 3328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3327
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)