ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart40a07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1) mRNA, complete cds Length = 1360 Score = 545 bits (275), Expect = e-152 Identities = 407/451 (90%) Strand = Plus / Plus Query: 109 aggagccgccgcgacagtacgtggtgcaggggcaggacggtcacggcgacctgctggccg 168 ||||||||||| | | |||| | ||||| | ||| ||| ||||||||||||||||||||| Sbjct: 80 aggagccgccgagccggtacttagtgcacgagcaagaccgtcacggcgacctgctggccg 139 Query: 169 ccgacgagtttccggagcccatccacctcatcgatcttacccggctcacggacgtcgacg 228 || |||| | ||||||||||||| ||||| || |||| |||||||| ||||| ||||| Sbjct: 140 cccacgaaatgccggagcccatccctctcattgaccttagccggctcatggacgccgacg 199 Query: 229 aggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccaccaaccatg 288 ||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 200 aggccgacaagctccgggcggctctacagacctggggcttcttcctggccaccaaccatg 259 Query: 289 ggatcgaggactctctcatggatgccatcacgagcgtgtcgagggagttcttccggcagc 348 |||||||||||||||||||||| || || | ||||| |||||||||||||||||| || | Sbjct: 260 ggatcgaggactctctcatggaagcaatgatgagcgcgtcgagggagttcttccgtcaac 319 Query: 349 cggcggaagagaagcagaaatgcagcaacctggtggacggcaacggcgagcactaccagg 408 || | || ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 320 cgtctgaggagaagcagaaatgcagcaacctggtggacggcaacggcaagcactaccagg 379 Query: 409 tggaagggtatggaagtgacaaggtggtgtccgaggatcaggtcctcaactggaacgacc 468 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 380 tggaagggtatggaagtgacaaggtggagtccgaggatcaggtcctcaattggaacgacc 439 Query: 469 ggttgcatctgagagtggagccggaagacgagaggaatttcgctaagtggcccagtcacc 528 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 440 ggttgcatctgagagttgagcccgaagatgagaggaatttcgctaagtggcccagtcacc 499 Query: 529 cggaatctttcagggatgtgctacatgagta 559 | |||||||||||||||||||| ||||||| Sbjct: 500 cagaatctttcagggatgtgctgaatgagta 530 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 aatggctccgtccgatgagtcgccgatggtgc 69 ||||||| ||||||||||| ||||||||||| Sbjct: 24 aatggctgcgtccgatgagatgccgatggtgc 55
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagcc 68 Score = 50.1 bits (25), Expect = 0.008 Identities = 103/129 (79%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 111 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 170 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccac 280 || ||||||||| | | |||| ||||||| ||||||| ||||||||||||||| || Sbjct: 171 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgcttac 230 Query: 281 caaccatgg 289 ||||||||| Sbjct: 231 caaccatgg 239 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 335 acggcaagaacttccaggtggaagggtatggaactgac 372
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagcc 68 Score = 50.1 bits (25), Expect = 0.008 Identities = 103/129 (79%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 111 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 170 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccac 280 || ||||||||| | | |||| ||||||| ||||||| ||||||||||||||| || Sbjct: 171 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgcttac 230 Query: 281 caaccatgg 289 ||||||||| Sbjct: 231 caaccatgg 239 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 335 acggcaagaacttccaggtggaagggtatggaactgac 372
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagcc 3904554 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagcc 3892731 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagcc 3854675 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 3904597 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3904656 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3904657 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3904712 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 3892774 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3892833 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3892834 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3892889 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 3854718 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3854777 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3854778 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3854833 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3904914 acggcaagaacttccaggtggaagggtatggaactgac 3904951 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3893023 acggcaagaacttccaggtggaagggtatggaactgac 3893060 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3855035 acggcaagaacttccaggtggaagggtatggaactgac 3855072
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagccgccg 119 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 10387386 gtgcaagagctggcggcagccggcgtcgaggagccgccg 10387424 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 482 agtggagccggaagacgagaggaatttcgc 511 ||||||||| ||||||||||||||| |||| Sbjct: 12788329 agtggagcctgaagacgagaggaatctcgc 12788358
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagcc 10430 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 10473 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 10532 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 10533 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 10588 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 10790 acggcaagaacttccaggtggaagggtatggaactgac 10827
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagcc 150685 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagcc 115 ||||| |||||||| |||||||||||||||||||| Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagcc 112629 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 150728 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 150787 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 150788 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 150843 Score = 48.1 bits (24), Expect = 0.031 Identities = 93/116 (80%) Strand = Plus / Plus Query: 161 gctggccgccgacgagtttccggagcccatccacctcatcgatcttacccggctcacgga 220 ||||| ||||| |||| | ||||||||||||| | || | ||||| | |||||| | | Sbjct: 112672 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 112731 Query: 221 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 276 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 112732 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 112787 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 151045 acggcaagaacttccaggtggaagggtatggaactgac 151082 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 391 acggcgagcactaccaggtggaagggtatggaagtgac 428 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 112989 acggcaagaacttccaggtggaagggtatggaactgac 113026
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagccgccg 119 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 29808 gtgcaagagctggcggcagccggcgtcgaggagccgccg 29846
>dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J09, full insert sequence Length = 1729 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 81 gtgcaggagctggctgcggccggcgtcgaggagccgccg 119 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 380 gtgcaagagctggcggcagccggcgtcgaggagccgccg 418
>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0040D23.1), mRNA Length = 1494 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 271 gagttcttccggctgccggcggaggagaag 300
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 gccggcgtcgaggagccgccgc 120 |||||||||||||||||||||| Sbjct: 953188 gccggcgtcgaggagccgccgc 953167
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 83216 gagttcttccggctgccggcggaggagaag 83245
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 7862 gagttcttccggctgccggcggaggagaag 7891
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 ccggctcacggacgtcgacgag 230 |||||||||||||||||||||| Sbjct: 4560844 ccggctcacggacgtcgacgag 4560865
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 20367714 gagttcttccggctgccggcggaggagaag 20367743
>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0086N11 Length = 146185 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 482 agtggagccggaagacgagaggaatttcgc 511 ||||||||| ||||||||||||||| |||| Sbjct: 136606 agtggagcctgaagacgagaggaatctcgc 136635
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 482 agtggagccggaagacgagaggaatttcgc 511 ||||||||| ||||||||||||||| |||| Sbjct: 7811 agtggagcctgaagacgagaggaatctcgc 7840
>dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F04, full insert sequence Length = 1257 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 482 agtggagccggaagacgagaggaatttcgc 511 ||||||||| ||||||||||||||| |||| Sbjct: 474 agtggagcctgaagacgagaggaatctcgc 503
>dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B08, full insert sequence Length = 1004 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 386 gagttcttccggctgccggcggaggagaag 415
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 333 gagttcttccggcagccggcggaagagaag 362 ||||||||||||| ||||||||| |||||| Sbjct: 20378986 gagttcttccggctgccggcggaggagaag 20379015
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 acgtggtgcaggggcaggacg 147 ||||||||||||||||||||| Sbjct: 1700179 acgtggtgcaggggcaggacg 1700159
>ref|XM_541613.2| PREDICTED: Canis familiaris similar to Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3) (Beta-IV spectrin) (LOC484499), mRNA Length = 8696 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 aggagctggctgcggccggcg 105 ||||||||||||||||||||| Sbjct: 2266 aggagctggctgcggccggcg 2286
>gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome 1, complete sequence Length = 197135 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 ccgaggatcaggtcctcaact 459 ||||||||||||||||||||| Sbjct: 107993 ccgaggatcaggtcctcaact 107973
>dbj|AB193030.1| Corynebacterium glutamicum DNA, strain specific island 3, strain: R Length = 56248 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 acgtggtgcaggggcaggacg 147 ||||||||||||||||||||| Sbjct: 46789 acgtggtgcaggggcaggacg 46809
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1298 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 321 ggagttcttccggctgccggcgga 344
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 aggccgaaaggctccgggcggcgc 252 ||||||||| |||||||||||||| Sbjct: 2006697 aggccgaaacgctccgggcggcgc 2006720
>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16 Length = 123385 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgacctgctggccgccg 171 |||||||||||||||||||| Sbjct: 7589 cggcgacctgctggccgccg 7608
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgacctgctggccgccg 171 |||||||||||||||||||| Sbjct: 143417 cggcgacctgctggccgccg 143436
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgacctgctggccgccg 171 |||||||||||||||||||| Sbjct: 169204 cggcgacctgctggccgccg 169223
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ggccggcgtcgaggagccgccgcg 121 ||||||||||||||||| |||||| Sbjct: 17600 ggccggcgtcgaggagctgccgcg 17577
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 agtttccggagcccatccac 194 |||||||||||||||||||| Sbjct: 360000 agtttccggagcccatccac 360019
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gatggtgcggccgacgacgg 81 |||||||||||||||||||| Sbjct: 20112011 gatggtgcggccgacgacgg 20111992
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 3732189 ggagttcttccggctgccggcgga 3732212
>gb|AC080002.6| Homo sapiens BAC clone RP11-231F9 from 2, complete sequence Length = 100706 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 acttacccaaacaaagaaatggct 44 |||| ||||||||||||||||||| Sbjct: 13689 actttcccaaacaaagaaatggct 13712
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 acctggtggacggcaacggcgagc 399 |||||||||||||| ||||||||| Sbjct: 4857995 acctggtggacggccacggcgagc 4857972
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 76540 ggagttcttccggctgccggcgga 76563
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gatggtgcggccgacgacgg 81 |||||||||||||||||||| Sbjct: 58557 gatggtgcggccgacgacgg 58538
>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence Length = 1301 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 325 ggagttcttccggctgccggcgga 348
>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence Length = 1298 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 321 ggagttcttccggctgccggcgga 344
>gb|AY104706.1| Zea mays PCO076122 mRNA sequence Length = 1382 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggagttcttccggcagccggcgga 355 |||||||||||||| ||||||||| Sbjct: 359 ggagttcttccggctgccggcgga 382
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 acggtcacggcgacctgctggccg 168 |||| ||||||||||||||||||| Sbjct: 1586764 acgggcacggcgacctgctggccg 1586787
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ggtgcaggggcaggacggtc 150 |||||||||||||||||||| Sbjct: 3416831 ggtgcaggggcaggacggtc 3416812
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 acggcgacctgctggccgcc 170 |||||||||||||||||||| Sbjct: 662701 acggcgacctgctggccgcc 662720
>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195835 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tacccaaacacttacccaaa 31 |||||||||||||||||||| Sbjct: 72891 tacccaaacacttacccaaa 72910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,881,756 Number of Sequences: 3902068 Number of extensions: 3881756 Number of successful extensions: 88588 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87279 Number of HSP's gapped (non-prelim): 1301 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
