ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TLP_ORYSA (P31110) Thaumatin-like protein precursor 35 0.19
2SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (... 32 0.95
3PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase ... 32 1.6
4LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal ... 32 1.6
5BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc... 32 1.6
6ATG13_EMENI (Q5BBK4) Autophagy-related protein 13 31 2.1
7AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 30 3.6
8SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot... 30 3.6
9RL18_NOCFA (Q5Z1Q6) 50S ribosomal protein L18 30 3.6
10SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 30 3.6
11MRGX2_MACMU (Q4QXU5) Mas-related G-protein coupled receptor memb... 30 4.7
12NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precu... 30 4.7
13GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-ga... 30 6.1
14BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 30 6.1
15MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1)... 30 6.1
16CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alph... 29 8.0
17OS81_SOLCO (P50702) Osmotin-like protein OSML81 precursor (PA81) 29 8.0
18MRGX2_PYGBI (Q4QXU2) Mas-related G-protein coupled receptor memb... 29 8.0
19TM45A_HUMAN (Q9NWC5) Transmembrane protein 45a (Dermal papilla-d... 29 8.0
20POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p... 29 8.0
21OSMO_TOBAC (P14170) Osmotin precursor 29 8.0
22GPDA_BORPA (Q7W1R0) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 29 8.0
23GPDA_BORBR (Q7WQN6) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 29 8.0

>TLP_ORYSA (P31110) Thaumatin-like protein precursor|
          Length = 177

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 140 APGATWPTRVPMATAVGRARGRTIAGYGVRGGGKC 36
           +PG TW   VP  T+ GR  GRT   +   G G C
Sbjct: 53  SPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSC 87



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>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 201 PQREQPDVVEQLPQAYEEEAGARRDVADEGAHGYRGRESARTDNRGVRSE 52
           PQ +QP   E++ +  EE+     DV DE +   RG ES       VR +
Sbjct: 749 PQSQQPSPEEEMSEEEEEDEEEEEDVTDEDSLAGRGSESGGEKAISVRGD 798



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>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1442

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 137 PGATWPTRVPMATAVGRARGRTI 69
           P   WPTR+P A+A  +  GRT+
Sbjct: 530 PSTVWPTRLPTASAASKQAGRTV 552



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>LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal protein 4|
           precursor
          Length = 590

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 46  PPLTPYPAIVRPRALPTAVAMGTLVGHVAPGAGFLLIGLWQLFNHIRLFSLRPGSYA 216
           PP  P P I +P A+P  +        V+P  GF + G    + H+    +  GS A
Sbjct: 381 PPFIPKPTIFKPDAVPATLEA------VSPSPGFQIPGTDHEYEHVSFHKIIAGSVA 431



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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = -1

Query: 192 EQPDVVEQLPQAYEEEAGARRDVADEGAHGYRGRESARTDNRGVRSEGRR 43
           E+ D  E+L  + EE+    RD  +EGA G+R  +SA  + R   ++G++
Sbjct: 331 EEVDYTEKLKFSDEEDG---RDSDEEGAEGHRDSQSASGEERPPEADGKK 377



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>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13|
          Length = 974

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
 Frame = -1

Query: 234  GEPDRRGVGAG--------PQREQPDVVEQLPQAYEEEAGARRDVADEGAHGYRGRESAR 79
            G  DRRG G G        PQ  Q +  E L  A  +   +RR   +EG  G  G +S+ 
Sbjct: 894  GTEDRRGTGRGSGGGRHNLPQAAQVEEDEPLLFAMSDFGASRRSF-EEGRQGNHGPDSSG 952

Query: 78   TDNRGVRSEGRREML 34
                  R  G+R  L
Sbjct: 953  NTGSSRRGSGKRGTL 967



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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
 Frame = -2

Query: 467 TASRIGARTLSMWMVTAANASRASEMDACSKLWRWSDGMVPSSSNGWCFAGPITSSIRMD 288
           + S     T S W  +A+    ++   A    W+ S  M PS ++ W             
Sbjct: 169 SGSSSAGSTGSRW-TSASTRGASTSPRATPPTWQRSTSMPPSRASPW------------- 214

Query: 287 IDVPTMTRMSSRWRTPRAGNQTGAA*EPGRSENSRMWLNSCHRPM-RRKPAPGATWPTRV 111
                  R   RWRT    ++T      GRS ++   +++    M RR  +P     T  
Sbjct: 215 ------PRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPPRASSTSP 268

Query: 110 PMATAVGRARGRTIAGYGVRGGGKCWW 30
             A  + R RG      G+ G    WW
Sbjct: 269 WRAIELWRLRGEDGKAPGMIG----WW 291



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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -2

Query: 242  PRAGNQTGAA*EPGRSENSRMWLNSCHRPMRRKPAPGATWPTRVPMATAVGRARGRTIAG 63
            PR G++     EPGRS +      S   P RR P+PGAT  TR  +       R + +  
Sbjct: 2026 PRVGSR-----EPGRSLHKAA---SVELPQRRSPSPGATRLTRGGLGEGEYAQRLQALRQ 2077

Query: 62   YGVRGG 45
              +RGG
Sbjct: 2078 RLLRGG 2083



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>RL18_NOCFA (Q5Z1Q6) 50S ribosomal protein L18|
          Length = 135

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 231 EPDRRGVGAGPQREQPDVVEQLPQAYEEEAGARRDVADEGAHGYRGRESARTD 73
           EPD R V  G +  +   V +L  A  + AG    V D G H Y GR +A  D
Sbjct: 75  EPDVRAV-EGDKTAKGKKVGELIAARAKAAGVEAVVFDRGGHDYHGRIAALAD 126



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -2

Query: 242  PRAGNQTGAA*EPGRSENSRMWLNSCHRPMRRKPAPGATWPTRVPMATAVGRARGRTIAG 63
            PR G++     EPGRS +      S   P RR P+PGAT  TR  +       R + +  
Sbjct: 2026 PRVGSR-----EPGRSLHKAA---SVELPQRRSPSPGATRLTRGGLGEGEYAQRLQALRQ 2077

Query: 62   YGVRGG 45
              +RGG
Sbjct: 2078 RLLRGG 2083



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>MRGX2_MACMU (Q4QXU5) Mas-related G-protein coupled receptor member X2|
          Length = 329

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 220 PVWFPARGVRHLELILVIVGTSMSILMELVIGPAKHQPFDDD 345
           P+W+  R  RHL  ++ ++  ++S+L+ ++ G      F DD
Sbjct: 133 PIWYRCRRPRHLSAVMCVLLWALSLLLSILEGKFCGFLFSDD 174



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>NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)]
          Length = 868

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +1

Query: 13  PNAADHHQHFPPPLTPYPAIVRPRALPTAVAMGTLVGHVAPGAGFLLIGLWQLFNHIRLF 192
           P A    +  P P    PA  R  A   A A G +    APG+  LL G+        L 
Sbjct: 75  PAAPPEPRPQPQPQPRSPAARRAAARSRAAAAGGMRRDPAPGSSMLLFGVSLACYSPSLK 134

Query: 193 SLRPGSYAAPV 225
           S++  +Y APV
Sbjct: 135 SVQDQAYKAPV 145



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>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel|
           3.6)
          Length = 903

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
 Frame = -2

Query: 341 SSNGWCFAGPITSSIRMDIDVP--------TMTRMSSRWRTPRAGNQTGAA*EPGRSENS 186
           + NGW FA P  S + +D+            M R+  +W   +A +  GA  E  R E  
Sbjct: 758 TKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKWLLRKACSLQGAEIEVDRLELK 817

Query: 185 RMW 177
             W
Sbjct: 818 SFW 820



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +1

Query: 52  LTPYPAIVRPRALPTAVAMGTLV---GHVAPGAGFLLIGLWQLFNHIRLFSLRPGSYAAP 222
           LTPY     PRA   A A+GT+V   G + P AG     L    + + L   RP  +   
Sbjct: 143 LTPYGEPPSPRAAHVATAVGTMVVIQGGIGP-AGLSAEDL----HVLDLTQQRPRWHRVV 197

Query: 223 VWFPARGVRHLELILVIVGTSMSILMELVIGPAKHQ 330
           V  P  G R+   ++ +VG    + +    G AKH+
Sbjct: 198 VQGPGPGPRYGH-VMALVGQRYLMPLASAYGLAKHR 232



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>MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1) (Protein nM15)|
          Length = 529

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -2

Query: 365 WSDGMVPSSSNGWCFAGPITSSIRMDIDVPTMTRMSSRWRTPRAGNQTGAA*EPGRS 195
           W     P   +GW   GP TS I    + P+ +   S W  P      G +  PG S
Sbjct: 214 WEHPNTPRGLSGW--EGPSTSRILSGWEGPSASWALSAWEGPSTSRALGLSESPGSS 268



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>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.3)
           (CaVT.3)
          Length = 2201

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 234 GEPDRRGVGAGPQREQPDVVEQLPQAYEEEAGARR---DVADEGAHGYRGRESARTDNRG 64
           G  +    G GPQ  +  V   L +  E+E GA R   DV  E     RG   ++  NRG
Sbjct: 544 GSAEAEANGDGPQSSEDGVSSDLGKEEEQEDGAARLCGDVWRETREKLRGIVDSKYFNRG 603

Query: 63  V 61
           +
Sbjct: 604 I 604



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>OS81_SOLCO (P50702) Osmotin-like protein OSML81 precursor (PA81)|
          Length = 247

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 149 RKPAPGATWPTRVPMATAVGRARGRTIAGYGVRGGGKC 36
           R+   G TW    P  T + R  GRT   +   G G C
Sbjct: 45  RRLNKGQTWVINAPRGTKMARIWGRTGCNFNAAGRGSC 82



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>MRGX2_PYGBI (Q4QXU2) Mas-related G-protein coupled receptor member X2|
          Length = 330

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 220 PVWFPARGVRHLELILVIVGTSMSILMELVIG 315
           P+W+  R  RHL  +L ++  ++S+L+ ++ G
Sbjct: 134 PIWYRCRRPRHLSAVLCVLLWALSLLLSILEG 165



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>TM45A_HUMAN (Q9NWC5) Transmembrane protein 45a (Dermal papilla-derived protein|
           7) (DNA polymerase-transactivated protein 4)
          Length = 275

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 106 MGTLVGHVAPGAGFLLIGLW 165
           MG   GH  PG  F +IGLW
Sbjct: 1   MGNFRGHALPGTFFFIIGLW 20



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>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 121 GHVAPGAGFLLIGLWQLFNHIRLFSLRPGSYAAPVWFPAR--GVRHLELILVIVGTSMSI 294
           G + PGA + L G+W L   + L +L P +YA      A   GV  + LIL+ +     +
Sbjct: 779 GRLVPGAAYALYGVWPLL--LLLLALPPRAYAMDREMAASCGGVVFVGLILLTLSPHYKV 836

Query: 295 LMELVI 312
            +  +I
Sbjct: 837 FLARLI 842



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>OSMO_TOBAC (P14170) Osmotin precursor|
          Length = 246

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 134 GATWPTRVPMATAVGRARGRTIAGYGVRGGGKC 36
           G TW    P  T + R  GRT   +   G G C
Sbjct: 50  GQTWVINAPRGTKMARVWGRTNCNFNAAGRGTC 82



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>GPDA_BORPA (Q7W1R0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 351

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 216 GVGAGPQREQPDVVEQLPQAYE--EEAGARRDVADEGAHGYRGRESARTDNRGVRSEGRR 43
           GV +GP   + +V + LP A     E+ A RD      HG   R  A TD  GV   G  
Sbjct: 149 GVLSGPSFAR-EVAQGLPVALTVASESSAVRDAVTTALHGAAVRIYASTDVVGVEVGGAL 207

Query: 42  EMLVVIGC 19
           + ++ + C
Sbjct: 208 KNVIAVAC 215



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>GPDA_BORBR (Q7WQN6) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 351

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 216 GVGAGPQREQPDVVEQLPQAYE--EEAGARRDVADEGAHGYRGRESARTDNRGVRSEGRR 43
           GV +GP   + +V + LP A     E+ A RD      HG   R  A TD  GV   G  
Sbjct: 149 GVLSGPSFAR-EVAQGLPVALTVASESSAVRDAVTTALHGAAVRIYASTDVVGVEVGGAL 207

Query: 42  EMLVVIGC 19
           + ++ + C
Sbjct: 208 KNVIAVAC 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,550,646
Number of Sequences: 219361
Number of extensions: 995514
Number of successful extensions: 4060
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4049
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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