ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart39h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 575 bits (290), Expect = e-161 Identities = 419/462 (90%) Strand = Plus / Minus Query: 103 gccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggcctg 162 |||||||| ||| | || ||||| ||||||||||||||||||||| ||||||| ||| || Sbjct: 16520151 gccatgggtaccatggttggccatgtcgcgccgggcgccggcttcatcctcatcggcatg 16520092 Query: 163 tggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgccg 222 |||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| Sbjct: 16520091 tggcagctgttcaaccacatccggctgttcgcgctgcggccgagctcgtacgcggcgccg 16520032 Query: 223 gtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggcacg 282 || |||||||| | |||||| || |||||||| |||||||| || || ||||||||| || Sbjct: 16520031 gtgtggttcccggtgcgcggggtgcgccacctggagctcatactggtgatcgtcggcgcg 16519972 Query: 283 tcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcgacgac 342 | || |||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 16519971 gctatctccatcctgatggagctcgtgatcgggccggcgaggcaccagccgttcgacgac 16519912 Query: 343 gacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgctcgcc 402 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 16519911 gacgggaccatcccctccaaccacctccacaacttcgagcacgcgtccatctcgctcgcg 16519852 Query: 403 ctgctcgcgttcgccgcggtcaccatccacatggacagggtccgggcgccgatgcgggac 462 ||||| | | ||||||||| || |||||||||||||||| | ||||||| ||||| ||| Sbjct: 16519851 ctgctggtctacgccgcggtgactatccacatggacagggccagggcgcccatgcgcgac 16519792 Query: 463 gccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 522 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16519791 gccgtgtcgcagctggtcgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 16519732 Query: 523 cactccgcggaccacatgggcgtggaggggcagttccactgg 564 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 16519731 cactccgcggaccacatgggcgtggaggggcagttccactgg 16519690 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 487 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 546 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 16510948 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 16510889 Query: 547 gaggggcagttccactgg 564 ||||| |||||||||||| Sbjct: 16510888 gagggccagttccactgg 16510871 Score = 42.1 bits (21), Expect = 1.9 Identities = 114/145 (78%) Strand = Plus / Minus Query: 136 ggcgccggcttcctcctcataggcctgtggcagctgttcaaccacatccggctgttctcg 195 |||||||||||| || | | ||| ||||||| |||||||||||| || ||| ||||| Sbjct: 16511299 ggcgccggcttcgtcgccgtcggcgtgtggcacctgttcaaccacgtcaagctcttctcc 16511240 Query: 196 ctgcggcccggctcctacgccgcgccggtctggttccccgcgcgcggcgtccgccacctc 255 | ||| || | | |||||| |||||||| |||||||||| || |||| ||| |||| Sbjct: 16511239 cagcgcccggacacctacgtcgcgccggcgtggttccccgtgccgggcgcgcgctacctg 16511180 Query: 256 gagctcatcctcgtcatcgtcggca 280 |||||| |||| |||||| ||||| Sbjct: 16511179 gagctcgccctcatcatcgccggca 16511155
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 575 bits (290), Expect = e-161 Identities = 419/462 (90%) Strand = Plus / Minus Query: 103 gccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggcctg 162 |||||||| ||| | || ||||| ||||||||||||||||||||| ||||||| ||| || Sbjct: 52376 gccatgggtaccatggttggccatgtcgcgccgggcgccggcttcatcctcatcggcatg 52317 Query: 163 tggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgccg 222 |||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| Sbjct: 52316 tggcagctgttcaaccacatccggctgttcgcgctgcggccgagctcgtacgcggcgccg 52257 Query: 223 gtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggcacg 282 || |||||||| | |||||| || |||||||| |||||||| || || ||||||||| || Sbjct: 52256 gtgtggttcccggtgcgcggggtgcgccacctggagctcatactggtgatcgtcggcgcg 52197 Query: 283 tcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcgacgac 342 | || |||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 52196 gctatctccatcctgatggagctcgtgatcgggccggcgaggcaccagccgttcgacgac 52137 Query: 343 gacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgctcgcc 402 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 52136 gacgggaccatcccctccaaccacctccacaacttcgagcacgcgtccatctcgctcgcg 52077 Query: 403 ctgctcgcgttcgccgcggtcaccatccacatggacagggtccgggcgccgatgcgggac 462 ||||| | | ||||||||| || |||||||||||||||| | ||||||| ||||| ||| Sbjct: 52076 ctgctggtctacgccgcggtgactatccacatggacagggccagggcgcccatgcgcgac 52017 Query: 463 gccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 522 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52016 gccgtgtcgcagctggtcgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 51957 Query: 523 cactccgcggaccacatgggcgtggaggggcagttccactgg 564 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 51956 cactccgcggaccacatgggcgtggaggggcagttccactgg 51915 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 487 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 546 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 43173 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 43114 Query: 547 gaggggcagttccactgg 564 ||||| |||||||||||| Sbjct: 43113 gagggccagttccactgg 43096 Score = 42.1 bits (21), Expect = 1.9 Identities = 114/145 (78%) Strand = Plus / Minus Query: 136 ggcgccggcttcctcctcataggcctgtggcagctgttcaaccacatccggctgttctcg 195 |||||||||||| || | | ||| ||||||| |||||||||||| || ||| ||||| Sbjct: 43524 ggcgccggcttcgtcgccgtcggcgtgtggcacctgttcaaccacgtcaagctcttctcc 43465 Query: 196 ctgcggcccggctcctacgccgcgccggtctggttccccgcgcgcggcgtccgccacctc 255 | ||| || | | |||||| |||||||| |||||||||| || |||| ||| |||| Sbjct: 43464 cagcgcccggacacctacgtcgcgccggcgtggttccccgtgccgggcgcgcgctacctg 43405 Query: 256 gagctcatcctcgtcatcgtcggca 280 |||||| |||| |||||| ||||| Sbjct: 43404 gagctcgccctcatcatcgccggca 43380
>dbj|AK066356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065C14, full insert sequence Length = 1038 Score = 575 bits (290), Expect = e-161 Identities = 419/462 (90%) Strand = Plus / Plus Query: 103 gccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggcctg 162 |||||||| ||| | || ||||| ||||||||||||||||||||| ||||||| ||| || Sbjct: 89 gccatgggtaccatggttggccatgtcgcgccgggcgccggcttcatcctcatcggcatg 148 Query: 163 tggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgccg 222 |||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| Sbjct: 149 tggcagctgttcaaccacatccggctgttcgcgctgcggccgagctcgtacgcggcgccg 208 Query: 223 gtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggcacg 282 || |||||||| | |||||| || |||||||| |||||||| || || ||||||||| || Sbjct: 209 gtgtggttcccggtgcgcggggtgcgccacctggagctcatactggtgatcgtcggcgcg 268 Query: 283 tcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcgacgac 342 | || |||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 269 gctatctccatcctgatggagctcgtgatcgggccggcgaggcaccagccgttcgacgac 328 Query: 343 gacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgctcgcc 402 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gacgggaccatcccctccaaccacctccacaacttcgagcacgcgtccatctcgctcgcg 388 Query: 403 ctgctcgcgttcgccgcggtcaccatccacatggacagggtccgggcgccgatgcgggac 462 ||||| | | ||||||||| || |||||||||||||||| | ||||||| ||||| ||| Sbjct: 389 ctgctggtctacgccgcggtgactatccacatggacagggccagggcgcccatgcgcgac 448 Query: 463 gccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 522 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 gccgtgtcgcagctggtcgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 508 Query: 523 cactccgcggaccacatgggcgtggaggggcagttccactgg 564 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 cactccgcggaccacatgggcgtggaggggcagttccactgg 550
>dbj|AK061210.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D03, full insert sequence Length = 1393 Score = 575 bits (290), Expect = e-161 Identities = 419/462 (90%) Strand = Plus / Plus Query: 103 gccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggcctg 162 |||||||| ||| | || ||||| ||||||||||||||||||||| ||||||| ||| || Sbjct: 92 gccatgggtaccatggttggccatgtcgcgccgggcgccggcttcatcctcatcggcatg 151 Query: 163 tggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcgccg 222 |||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| Sbjct: 152 tggcagctgttcaaccacatccggctgttcgcgctgcggccgagctcgtacgcggcgccg 211 Query: 223 gtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggcacg 282 || |||||||| | |||||| || |||||||| |||||||| || || ||||||||| || Sbjct: 212 gtgtggttcccggtgcgcggggtgcgccacctggagctcatactggtgatcgtcggcgcg 271 Query: 283 tcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcgacgac 342 | || |||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 272 gctatctccatcctgatggagctcgtgatcgggccggcgaggcaccagccgttcgacgac 331 Query: 343 gacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgctcgcc 402 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 332 gacgggaccatcccctccaaccacctccacaacttcgagcacgcgtccatctcgctcgcg 391 Query: 403 ctgctcgcgttcgccgcggtcaccatccacatggacagggtccgggcgccgatgcgggac 462 ||||| | | ||||||||| || |||||||||||||||| | ||||||| ||||| ||| Sbjct: 392 ctgctggtctacgccgcggtgactatccacatggacagggccagggcgcccatgcgcgac 451 Query: 463 gccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 522 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 gccgtgtcgcagctggtcgccgccgcggcgttcgcgcagcagctgctcatcttccacctc 511 Query: 523 cactccgcggaccacatgggcgtggaggggcagttccactgg 564 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 cactccgcggaccacatgggcgtggaggggcagttccactgg 553
>ref|XM_482813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1265 Score = 260 bits (131), Expect = 4e-66 Identities = 268/311 (86%), Gaps = 2/311 (0%) Strand = Plus / Plus Query: 100 gtagccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggc 159 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 28 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 87 Query: 160 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 219 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 88 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 147 Query: 220 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 279 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 148 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 207 Query: 280 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 338 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 208 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 266 Query: 339 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 398 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 267 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 326 Query: 399 cgccctgctcg 409 ||| ||||||| Sbjct: 327 cgcgctgctcg 337 Score = 111 bits (56), Expect = 3e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 462 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 521 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 390 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 449 Query: 522 ccactccgcggaccacatgggcgtggaggggcagttccac 561 |||||| ||||||||| ||||||||||||||||| |||| Sbjct: 450 ccactcggcggaccacgcgggcgtggaggggcagtaccac 489
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 260 bits (131), Expect = 4e-66 Identities = 268/311 (86%), Gaps = 2/311 (0%) Strand = Plus / Minus Query: 100 gtagccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggc 159 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 22705335 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 22705276 Query: 160 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 219 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 22705275 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 22705216 Query: 220 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 279 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 22705215 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 22705156 Query: 280 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 338 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 22705155 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 22705097 Query: 339 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 398 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 22705096 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 22705037 Query: 399 cgccctgctcg 409 ||| ||||||| Sbjct: 22705036 cgcgctgctcg 22705026 Score = 111 bits (56), Expect = 3e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 462 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 521 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 22704973 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 22704914 Query: 522 ccactccgcggaccacatgggcgtggaggggcagttccac 561 |||||| ||||||||| ||||||||||||||||| |||| Sbjct: 22704913 ccactcggcggaccacgcgggcgtggaggggcagtaccac 22704874
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1116H04 Length = 140142 Score = 260 bits (131), Expect = 4e-66 Identities = 268/311 (86%), Gaps = 2/311 (0%) Strand = Plus / Minus Query: 100 gtagccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggc 159 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 31977 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 31918 Query: 160 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 219 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 31917 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 31858 Query: 220 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 279 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 31857 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 31798 Query: 280 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 338 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 31797 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 31739 Query: 339 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 398 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31738 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 31679 Query: 399 cgccctgctcg 409 ||| ||||||| Sbjct: 31678 cgcgctgctcg 31668 Score = 111 bits (56), Expect = 3e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 462 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 521 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 31615 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 31556 Query: 522 ccactccgcggaccacatgggcgtggaggggcagttccac 561 |||||| ||||||||| ||||||||||||||||| |||| Sbjct: 31555 ccactcggcggaccacgcgggcgtggaggggcagtaccac 31516
>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1111C03 Length = 144879 Score = 260 bits (131), Expect = 4e-66 Identities = 268/311 (86%), Gaps = 2/311 (0%) Strand = Plus / Minus Query: 100 gtagccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggc 159 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 74129 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 74070 Query: 160 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 219 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 74069 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 74010 Query: 220 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 279 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 74009 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 73950 Query: 280 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 338 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 73949 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 73891 Query: 339 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 398 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73890 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 73831 Query: 399 cgccctgctcg 409 ||| ||||||| Sbjct: 73830 cgcgctgctcg 73820 Score = 111 bits (56), Expect = 3e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 462 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 521 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 73767 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 73708 Query: 522 ccactccgcggaccacatgggcgtggaggggcagttccac 561 |||||| ||||||||| ||||||||||||||||| |||| Sbjct: 73707 ccactcggcggaccacgcgggcgtggaggggcagtaccac 73668
>dbj|AK108845.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A01, full insert sequence Length = 1265 Score = 260 bits (131), Expect = 4e-66 Identities = 268/311 (86%), Gaps = 2/311 (0%) Strand = Plus / Plus Query: 100 gtagccatgggcaccctcgtcggccacgtcgcgccgggcgccggcttcctcctcataggc 159 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 28 gtagccatgggcaccctcgtcggccatgtcgcgccgggcgccggcttcctcctcgtcggc 87 Query: 160 ctgtggcagctgttcaaccacatccggctgttctcgctgcggcccggctcctacgccgcg 219 |||||||| || | |||||||||| |||| ||| ||| |||| | |||||| |||| Sbjct: 88 ctgtggcacctctacaaccacatcaggctcttcctgctcaggccaaccgcctacgtcgcg 147 Query: 220 ccggtctggttccccgcgcgcggcgtccgccacctcgagctcatcctcgtcatcgtcggc 279 || ||||||||||||| || | | |||| ||||||||||| ||||||||||| |||| Sbjct: 148 cccgtctggttccccgtccggcgagcccgctacctcgagctcgccctcgtcatcgccggc 207 Query: 280 ac-gtcgatgtccatcctgatggagctcgtgatcggccccgcgaagcaccagccgttcga 338 | |||| ||||||||| ||||||||||| ||||||| |||| ||||||||||||||| Sbjct: 208 gccgtcgc-gtccatcctcatggagctcgtcgtcggcccggcgaggcaccagccgttcga 266 Query: 339 cgacgacgggaccatcccgtccgaccacctccacaacttcgagcacgcgtccatctcgct 398 || |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 267 cgccgacggcaccgtgccgtccgaccacctccacaacttcgagcacgcgtccatctccct 326 Query: 399 cgccctgctcg 409 ||| ||||||| Sbjct: 327 cgcgctgctcg 337 Score = 111 bits (56), Expect = 3e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 462 cgccgtgtcgcagctggccgccgccgcggcgttcgcgcagcagctgctcatcttccacct 521 ||||||||||||||| | |||||||| ||||||||||||||||||| | | |||||||| Sbjct: 390 cgccgtgtcgcagctcgtcgccgccgtggcgttcgcgcagcagctgatgctgttccacct 449 Query: 522 ccactccgcggaccacatgggcgtggaggggcagttccac 561 |||||| ||||||||| ||||||||||||||||| |||| Sbjct: 450 ccactcggcggaccacgcgggcgtggaggggcagtaccac 489
>dbj|AK110839.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B04, full insert sequence Length = 1545 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 487 gcggcgttcgcgcagcagctgctcatcttccacctccactccgcggaccacatgggcgtg 546 |||| |||||||||| |||| ||| |||||||| |||||||| | |||||| ||||| Sbjct: 472 gcggtgttcgcgcaggagctcctcgtcttccacttccactccaccgaccacgccggcgtc 531 Query: 547 gaggggcagttccactgg 564 ||||| |||||||||||| Sbjct: 532 gagggccagttccactgg 549 Score = 42.1 bits (21), Expect = 1.9 Identities = 114/145 (78%) Strand = Plus / Plus Query: 136 ggcgccggcttcctcctcataggcctgtggcagctgttcaaccacatccggctgttctcg 195 |||||||||||| || | | ||| ||||||| |||||||||||| || ||| ||||| Sbjct: 122 ggcgccggcttcgtcgccgtcggcgtgtggcacctgttcaaccacgtcaagctcttctcc 181 Query: 196 ctgcggcccggctcctacgccgcgccggtctggttccccgcgcgcggcgtccgccacctc 255 | ||| || | | |||||| |||||||| |||||||||| || |||| ||| |||| Sbjct: 182 cagcgcccggacacctacgtcgcgccggcgtggttccccgtgccgggcgcgcgctacctg 241 Query: 256 gagctcatcctcgtcatcgtcggca 280 |||||| |||| |||||| ||||| Sbjct: 242 gagctcgccctcatcatcgccggca 266
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 395 cgctcgccctgctcgcgttcgccg 418 |||||||||||||||||||||||| Sbjct: 4599544 cgctcgccctgctcgcgttcgccg 4599521 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 2768320 gccgccgccgcggcgttcgc 2768339
>gb|AC024781.2| Caenorhabditis elegans cosmid Y43H11AL, complete sequence Length = 34333 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 agctcatcctcgtcatcgtcgg 278 |||||||||||||||||||||| Sbjct: 29964 agctcatcctcgtcatcgtcgg 29985
>ref|NM_061286.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-85) (pqn-85) mRNA, complete cds Length = 6996 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 agctcatcctcgtcatcgtcgg 278 |||||||||||||||||||||| Sbjct: 1739 agctcatcctcgtcatcgtcgg 1718
>ref|NM_191755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 ctggccgccgccgcggcgttcgcgc 499 ||||||||||||||||||| ||||| Sbjct: 352 ctggccgccgccgcggcgtccgcgc 376
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 100146 agcagctgctcatcctcgacctccactcc 100118
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 tcctcgtcatcgtcggcacgt 283 ||||||||||||||||||||| Sbjct: 114594 tcctcgtcatcgtcggcacgt 114574
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 acgcagccgatcaccaccagc 37 ||||||||||||||||||||| Sbjct: 18663 acgcagccgatcaccaccagc 18683
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 tcctcgtcatcgtcggcacgt 283 ||||||||||||||||||||| Sbjct: 29656783 tcctcgtcatcgtcggcacgt 29656803 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttccctcctcccctcactcc 59 |||||||||||||||||||| Sbjct: 31774706 ttccctcctcccctcactcc 31774725 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 29223730 gccgccgccgcggcgttcgc 29223749
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 gccgccgccgcggcgttcgcg 498 ||||||||||||||||||||| Sbjct: 124566 gccgccgccgcggcgttcgcg 124546
>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC580159 (LOC580159), mRNA Length = 1902 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tcatcctcgtcatcgtcggca 280 ||||||||||||||||||||| Sbjct: 1187 tcatcctcgtcatcgtcggca 1167 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tcatcctcgtcatcgtcggca 280 ||||||||||||||||||||| Sbjct: 1127 tcatcctcgtcatcgtcggca 1107
>emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment 23/24 Length = 306550 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgatcaccaccagcatttcc 43 ||||||||||||||||||||| Sbjct: 230561 ccgatcaccaccagcatttcc 230541
>gb|AY026332.1| Oryza sativa Myb transcription factor JAMyb mRNA, complete cds Length = 1343 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 398 agcagctgctcatcctcgacctccactcc 426
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 23170380 agcagctgctcatcctcgacctccactcc 23170352
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 26795519 agcagctgctcatcctcgacctccactcc 26795491 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 gccgccgccgcggcgttcgcg 498 ||||||||||||||||||||| Sbjct: 21772513 gccgccgccgcggcgttcgcg 21772493
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 tcctcgtcatcgtcggcacgt 283 ||||||||||||||||||||| Sbjct: 29748205 tcctcgtcatcgtcggcacgt 29748225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttccctcctcccctcactcc 59 |||||||||||||||||||| Sbjct: 31865222 ttccctcctcccctcactcc 31865241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 29315106 gccgccgccgcggcgttcgc 29315125
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 ctggccgccgccgcggcgttcgcgc 499 ||||||||||||||||||| ||||| Sbjct: 29774903 ctggccgccgccgcggcgtccgcgc 29774927
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 ctggccgccgccgcggcgttcgcgc 499 ||||||||||||||||||| ||||| Sbjct: 18998 ctggccgccgccgcggcgtccgcgc 19022
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 ctggccgccgccgcggcgttcgcgc 499 ||||||||||||||||||| ||||| Sbjct: 104634 ctggccgccgccgcggcgtccgcgc 104658
>gb|AE005115.1| Halobacterium sp. NRC-1 section 146 of 170 of the complete genome Length = 14635 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 480 cgccgccgcggcgttcgcgca 500 ||||||||||||||||||||| Sbjct: 3817 cgccgccgcggcgttcgcgca 3837
>dbj|AK105543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H12, full insert sequence Length = 1391 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 tcctcgtcatcgtcggcacgt 283 ||||||||||||||||||||| Sbjct: 123 tcctcgtcatcgtcggcacgt 143
>dbj|AK072403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H01, full insert sequence Length = 2294 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 617 agcagctgctcatcctcgacctccactcc 645
>dbj|AK069082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005A19, full insert sequence Length = 1404 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 416 agcagctgctcatcctcgacctccactcc 444
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 27122751 agcagctgctcatcctcgacctccactcc 27122723 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 gccgccgccgcggcgttcgcg 498 ||||||||||||||||||||| Sbjct: 22082712 gccgccgccgcggcgttcgcg 22082692
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 23098571 agcagctgctcatcctcgacctccactcc 23098543
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 500 agcagctgctcatcttccacctccactcc 528 |||||||||||||| || ||||||||||| Sbjct: 8017 agcagctgctcatcctcgacctccactcc 8045
>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence Length = 220201 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 catttccctcctcccctcact 57 ||||||||||||||||||||| Sbjct: 174625 catttccctcctcccctcact 174605
>ref|NM_104397.2| Arabidopsis thaliana unknown protein AT1G55240 mRNA, complete cds Length = 1166 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 349 accatcccgtccgaccacctccacaacttcga 380 |||||||| || ||||||||||||||||||| Sbjct: 260 accatcccatcgaaccacctccacaacttcga 291
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tggccgccgccgcggcgttc 495 |||||||||||||||||||| Sbjct: 31989 tggccgccgccgcggcgttc 32008
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gacgggaccatcccgtccga 362 |||||||||||||||||||| Sbjct: 1684283 gacgggaccatcccgtccga 1684264
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 55545 gccgccgccgcggcgttcgc 55564
>gb|AE009222.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 248 of 256 of the complete sequence Length = 12589 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cgctcgccctgctcgcgttcgccg 418 |||||||||||||||||| ||||| Sbjct: 9389 cgctcgccctgctcgcgtgcgccg 9412
>gb|BT012146.1| Arabidopsis thaliana At1g55240 mRNA, complete cds Length = 936 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 349 accatcccgtccgaccacctccacaacttcga 380 |||||||| || ||||||||||||||||||| Sbjct: 244 accatcccatcgaaccacctccacaacttcga 275
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 132270 gccgccgccgcggcgttcgc 132251
>gb|BT011215.1| Arabidopsis thaliana At1g55240 gene, complete cds Length = 1064 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 349 accatcccgtccgaccacctccacaacttcga 380 |||||||| || ||||||||||||||||||| Sbjct: 343 accatcccatcgaaccacctccacaacttcga 374
>ref|XM_757067.1| Ustilago maydis 521 hypothetical protein (UM06013.1) partial mRNA Length = 6417 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 atcctcgtcatcgtcggcac 281 |||||||||||||||||||| Sbjct: 1278 atcctcgtcatcgtcggcac 1259
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tcgcgttcgccgcggtcacc 426 |||||||||||||||||||| Sbjct: 27245 tcgcgttcgccgcggtcacc 27264
>emb|AL138735.7| Human DNA sequence from clone RP1-321B9 on chromosome 6p12.2-21.2 Contains part of the TReP-132 gene for zinc finger transcription protein, complete sequence Length = 83557 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tcctcataggcctgtggcag 168 |||||||||||||||||||| Sbjct: 18965 tcctcataggcctgtggcag 18984
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttccctcctcccctcactcc 59 |||||||||||||||||||| Sbjct: 99932 ttccctcctcccctcactcc 99951
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcggcgttcgcgcagcagc 505 |||||||||||||||||||| Sbjct: 903273 cgcggcgttcgcgcagcagc 903254
>gb|AE005860.1| Caulobacter crescentus CB15 section 186 of 359 of the complete genome Length = 11137 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 ctcgtcggccacgtcgcgccgggc 138 ||||||||||||| |||||||||| Sbjct: 9301 ctcgtcggccacggcgcgccgggc 9324
>gb|AE012115.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 23 of 460 of the complete genome Length = 10703 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 cgccgcggcgttcgcgcagc 502 |||||||||||||||||||| Sbjct: 4264 cgccgcggcgttcgcgcagc 4245
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cgctcgccctgctcgcgttcgccg 418 |||||||||||||||||| ||||| Sbjct: 2751414 cgctcgccctgctcgcgtgcgccg 2751437
>gb|AF285783.1| Myxococcus xanthus hsfBA operon, complete sequence; branching enzyme GlgB gene, partial cds; and unknown genes Length = 8785 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 gccctgctcgcgttcgccgcggtc 423 |||||||||||||| ||||||||| Sbjct: 7043 gccctgctcgcgttggccgcggtc 7020
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 gtcgcagctggccgccgccgcggc 491 ||||| |||||||||||||||||| Sbjct: 3081185 gtcgctgctggccgccgccgcggc 3081162 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 cgctcgccctgctcgcgttcgccg 418 |||||||||||||| ||||||||| Sbjct: 342829 cgctcgccctgctcccgttcgccg 342806
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 cgccgcggcgttcgcgcagc 502 |||||||||||||||||||| Sbjct: 247670 cgccgcggcgttcgcgcagc 247651
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete sequence Length = 101954 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 349 accatcccgtccgaccacctccacaacttcga 380 |||||||| || ||||||||||||||||||| Sbjct: 73163 accatcccatcgaaccacctccacaacttcga 73132
>gb|AE004707.1| Pseudomonas aeruginosa PAO1, section 268 of 529 of the complete genome Length = 10940 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ggacagggtccgggcgccga 454 |||||||||||||||||||| Sbjct: 8386 ggacagggtccgggcgccga 8367
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 cgcggcgttcgcgcagcagctgct 509 ||||||| |||||||||||||||| Sbjct: 2358309 cgcggcgctcgcgcagcagctgct 2358286
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 agccgttcgacgacgacggg 348 |||||||||||||||||||| Sbjct: 6761541 agccgttcgacgacgacggg 6761522 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 acgccgtgtcgcagctggcc 480 |||||||||||||||||||| Sbjct: 5171691 acgccgtgtcgcagctggcc 5171672
>dbj|AK120539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F07, full insert sequence Length = 1970 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 gccgccgccgcggcgttcgc 497 |||||||||||||||||||| Sbjct: 412 gccgccgccgcggcgttcgc 431
>dbj|AK106911.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A07, full insert sequence Length = 1659 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tggccgccgccgcggcgttc 495 |||||||||||||||||||| Sbjct: 1496 tggccgccgccgcggcgttc 1477
>gb|BT024115.1| Zea mays clone EL01N0513A07 mRNA sequence Length = 1781 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 gccgccgcggcgttcgcgca 500 |||||||||||||||||||| Sbjct: 159 gccgccgcggcgttcgcgca 178
>gb|AF099409.1|AF099409 Zea mays clone ZmMYBIM45 R2R3MYB-domain protein mRNA, partial cds Length = 129 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 500 agcagctgctcatcttccacctccactc 527 |||||||||||||| || |||||||||| Sbjct: 50 agcagctgctcatcctcgacctccactc 77
>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4, complete sequence Length = 207949 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ctcctcataggcctgtggca 167 |||||||||||||||||||| Sbjct: 20196 ctcctcataggcctgtggca 20177
>gb|AY106414.1| Zea mays PCO109372 mRNA sequence Length = 1863 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 gccgccgcggcgttcgcgca 500 |||||||||||||||||||| Sbjct: 111 gccgccgcggcgttcgcgca 130
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 cggcgtccgccacctcgagctcatcctc 267 |||||||||||||||| ||| ||||||| Sbjct: 1842117 cggcgtccgccacctccagcccatcctc 1842090
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 cgcggcgttcgcgcagcagc 505 |||||||||||||||||||| Sbjct: 933470 cgcggcgttcgcgcagcagc 933451
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 ctgctcgcgttcgccgcggtcaccatcc 430 ||||||||||||||||||| ||| |||| Sbjct: 2703445 ctgctcgcgttcgccgcggacacgatcc 2703472
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 gccgtgtcgcagctggccgccgcc 486 ||||||| |||||||||||||||| Sbjct: 3371865 gccgtgttgcagctggccgccgcc 3371842
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 462 cgccgtgtcgcagctggccgccgccgcg 489 ||||||||||| || ||||||||||||| Sbjct: 561893 cgccgtgtcgctgcgggccgccgccgcg 561866
>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C) Length = 158230 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ggacagggtccgggcgccga 454 |||||||||||||||||||| Sbjct: 151696 ggacagggtccgggcgccga 151715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,210,294 Number of Sequences: 3902068 Number of extensions: 4210294 Number of successful extensions: 102617 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98431 Number of HSP's gapped (non-prelim): 4176 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
