ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 149 bits (75), Expect = 1e-32 Identities = 181/215 (84%), Gaps = 6/215 (2%) Strand = Plus / Plus Query: 173 gcgagaagttccctgctggcaggagctacgagacgtgcgccgatctcccggccctcggcg 232 ||||||||||||| || || |||||||||| |||||||||||| || ||||| ||||||| Sbjct: 150057 gcgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcg 150116 Query: 233 ctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgttcgcggcca 292 | ||||||||||||||||||||| ||| ||| |||| || ||||||||| ||||| Sbjct: 150117 cgacgctgcactggacctacgacggcaaggcgtcgacgctgtcgctggcgttcgtggcca 150176 Query: 293 a---gccggcgagcggcgccggc---tgggtggcgtggggcatcaaccccaccggcgaag 346 | |||||||||||||| |||| |||||| |||||| ||||||||||||||||| | Sbjct: 150177 agccgccggcgagcggcggcggcgggtgggtgtcgtgggcgatcaaccccaccggcgacg 150236 Query: 347 ggatgaagggtgcgcagtcgctcctcgccttcaag 381 | |||||||| |||||| ||||| ||||||||||| Sbjct: 150237 gcatgaagggcgcgcaggcgctcgtcgccttcaag 150271 Score = 97.6 bits (49), Expect = 4e-17 Identities = 120/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 394 tacgtcgtcaacacgtacaacctcaccgggtacaaaccgctcagcccgacgtccactccc 453 |||||||| |||||||||||| ||||||||||||| ||| || | | |||| || ||| Sbjct: 150293 tacgtcgtgaacacgtacaacgtcaccgggtacaagccgttccccgccgcgtcaacgccc 150352 Query: 454 attgcgttcaaggccaccgagctcgccgccgacgagggagccg---gcggtaaggtgcgg 510 || |||||||| |||||||| ||||||||||||||| | |||| ||| ||| ||||| Sbjct: 150353 atcgcgttcaacgccaccgacctcgccgccgacgagagcgccgccaccggcaagctgcgg 150412 Query: 511 ctctacggcacgctgcagctgcc 533 |||||||||| |||||||||||| Sbjct: 150413 ctctacggcaagctgcagctgcc 150435
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 149 bits (75), Expect = 1e-32 Identities = 181/215 (84%), Gaps = 6/215 (2%) Strand = Plus / Plus Query: 173 gcgagaagttccctgctggcaggagctacgagacgtgcgccgatctcccggccctcggcg 232 ||||||||||||| || || |||||||||| |||||||||||| || ||||| ||||||| Sbjct: 34731 gcgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcg 34790 Query: 233 ctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgttcgcggcca 292 | ||||||||||||||||||||| ||| ||| |||| || ||||||||| ||||| Sbjct: 34791 cgacgctgcactggacctacgacggcaaggcgtcgacgctgtcgctggcgttcgtggcca 34850 Query: 293 a---gccggcgagcggcgccggc---tgggtggcgtggggcatcaaccccaccggcgaag 346 | |||||||||||||| |||| |||||| |||||| ||||||||||||||||| | Sbjct: 34851 agccgccggcgagcggcggcggcgggtgggtgtcgtgggcgatcaaccccaccggcgacg 34910 Query: 347 ggatgaagggtgcgcagtcgctcctcgccttcaag 381 | |||||||| |||||| ||||| ||||||||||| Sbjct: 34911 gcatgaagggcgcgcaggcgctcgtcgccttcaag 34945 Score = 97.6 bits (49), Expect = 4e-17 Identities = 120/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 394 tacgtcgtcaacacgtacaacctcaccgggtacaaaccgctcagcccgacgtccactccc 453 |||||||| |||||||||||| ||||||||||||| ||| || | | |||| || ||| Sbjct: 34967 tacgtcgtgaacacgtacaacgtcaccgggtacaagccgttccccgccgcgtcaacgccc 35026 Query: 454 attgcgttcaaggccaccgagctcgccgccgacgagggagccg---gcggtaaggtgcgg 510 || |||||||| |||||||| ||||||||||||||| | |||| ||| ||| ||||| Sbjct: 35027 atcgcgttcaacgccaccgacctcgccgccgacgagagcgccgccaccggcaagctgcgg 35086 Query: 511 ctctacggcacgctgcagctgcc 533 |||||||||| |||||||||||| Sbjct: 35087 ctctacggcaagctgcagctgcc 35109
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 149 bits (75), Expect = 1e-32 Identities = 181/215 (84%), Gaps = 6/215 (2%) Strand = Plus / Plus Query: 173 gcgagaagttccctgctggcaggagctacgagacgtgcgccgatctcccggccctcggcg 232 ||||||||||||| || || |||||||||| |||||||||||| || ||||| ||||||| Sbjct: 19104772 gcgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcg 19104831 Query: 233 ctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgttcgcggcca 292 | ||||||||||||||||||||| ||| ||| |||| || ||||||||| ||||| Sbjct: 19104832 cgacgctgcactggacctacgacggcaaggcgtcgacgctgtcgctggcgttcgtggcca 19104891 Query: 293 a---gccggcgagcggcgccggc---tgggtggcgtggggcatcaaccccaccggcgaag 346 | |||||||||||||| |||| |||||| |||||| ||||||||||||||||| | Sbjct: 19104892 agccgccggcgagcggcggcggcgggtgggtgtcgtgggcgatcaaccccaccggcgacg 19104951 Query: 347 ggatgaagggtgcgcagtcgctcctcgccttcaag 381 | |||||||| |||||| ||||| ||||||||||| Sbjct: 19104952 gcatgaagggcgcgcaggcgctcgtcgccttcaag 19104986 Score = 97.6 bits (49), Expect = 4e-17 Identities = 120/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 394 tacgtcgtcaacacgtacaacctcaccgggtacaaaccgctcagcccgacgtccactccc 453 |||||||| |||||||||||| ||||||||||||| ||| || | | |||| || ||| Sbjct: 19105008 tacgtcgtgaacacgtacaacgtcaccgggtacaagccgttccccgccgcgtcaacgccc 19105067 Query: 454 attgcgttcaaggccaccgagctcgccgccgacgagggagccg---gcggtaaggtgcgg 510 || |||||||| |||||||| ||||||||||||||| | |||| ||| ||| ||||| Sbjct: 19105068 atcgcgttcaacgccaccgacctcgccgccgacgagagcgccgccaccggcaagctgcgg 19105127 Query: 511 ctctacggcacgctgcagctgcc 533 |||||||||| |||||||||||| Sbjct: 19105128 ctctacggcaagctgcagctgcc 19105150
>ref|XM_483413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgagggagccggcggtaaggtgcgg 510 ||||| |||||| ||||||||| ||||||||||||||||| |||||| ||| | || Sbjct: 379 cccatcgcgttcccggccaccgacctcgccgccgacgagggcagcggcggcaagatccgc 438 Query: 511 ctctacggcacgctgcagctgcccaagggcatggagtccgtgaacca 557 |||||||||| ||||||||| | |||||| ||| ||||||||||||| Sbjct: 439 ctctacggcaagctgcagctccacaaggggatgaagtccgtgaacca 485 Score = 61.9 bits (31), Expect = 2e-06 Identities = 103/127 (81%) Strand = Plus / Plus Query: 225 cctcggcgctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgtt 284 ||||||||| |||||||||| || ||||||||| | ||||| || || |||||||| Sbjct: 144 cctcggcgcggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgtt 203 Query: 285 cgcggccaagccggcgagcggcgccggctgggtggcgtggggcatcaaccccaccggcga 344 || ||| ||||||| ||| || ||| |||||||||||||| | |||||||||||||| Sbjct: 204 cgtggcggcgccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcga 263 Query: 345 agggatg 351 |||||| Sbjct: 264 ggggatg 270
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgagggagccggcggtaaggtgcgg 510 ||||| |||||| ||||||||| ||||||||||||||||| |||||| ||| | || Sbjct: 26079768 cccatcgcgttcccggccaccgacctcgccgccgacgagggcagcggcggcaagatccgc 26079827 Query: 511 ctctacggcacgctgcagctgcccaagggcatggagtccgtgaacca 557 |||||||||| ||||||||| | |||||| ||| ||||||||||||| Sbjct: 26079828 ctctacggcaagctgcagctccacaaggggatgaagtccgtgaacca 26079874 Score = 61.9 bits (31), Expect = 2e-06 Identities = 103/127 (81%) Strand = Plus / Plus Query: 225 cctcggcgctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgtt 284 ||||||||| |||||||||| || ||||||||| | ||||| || || |||||||| Sbjct: 26079533 cctcggcgcggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgtt 26079592 Query: 285 cgcggccaagccggcgagcggcgccggctgggtggcgtggggcatcaaccccaccggcga 344 || ||| ||||||| ||| || ||| |||||||||||||| | |||||||||||||| Sbjct: 26079593 cgtggcggcgccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcga 26079652 Query: 345 agggatg 351 |||||| Sbjct: 26079653 ggggatg 26079659 Score = 50.1 bits (25), Expect = 0.008 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 239 tgcactggacctacgacgcggcggcct---cgtcgctctccgtggcgttcg 286 ||||||||||||||||||| ||||| | ||||||| ||||||||||||| Sbjct: 26067185 tgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggcgttcg 26067135
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgagggagccggcggtaaggtgcgg 510 ||||| |||||| ||||||||| ||||||||||||||||| |||||| ||| | || Sbjct: 23699 cccatcgcgttcccggccaccgacctcgccgccgacgagggcagcggcggcaagatccgc 23758 Query: 511 ctctacggcacgctgcagctgcccaagggcatggagtccgtgaacca 557 |||||||||| ||||||||| | |||||| ||| ||||||||||||| Sbjct: 23759 ctctacggcaagctgcagctccacaaggggatgaagtccgtgaacca 23805 Score = 61.9 bits (31), Expect = 2e-06 Identities = 103/127 (81%) Strand = Plus / Plus Query: 225 cctcggcgctgcgctgcactggacctacgacgcggcggcctcgtcgctctccgtggcgtt 284 ||||||||| |||||||||| || ||||||||| | ||||| || || |||||||| Sbjct: 23464 cctcggcgcggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgtt 23523 Query: 285 cgcggccaagccggcgagcggcgccggctgggtggcgtggggcatcaaccccaccggcga 344 || ||| ||||||| ||| || ||| |||||||||||||| | |||||||||||||| Sbjct: 23524 cgtggcggcgccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcga 23583 Query: 345 agggatg 351 |||||| Sbjct: 23584 ggggatg 23590 Score = 50.1 bits (25), Expect = 0.008 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 239 tgcactggacctacgacgcggcggcct---cgtcgctctccgtggcgttcg 286 ||||||||||||||||||| ||||| | ||||||| ||||||||||||| Sbjct: 11116 tgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggcgttcg 11066
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgaggg---agccggcggtaaggtg 507 ||||| |||||||| |||||||| ||||||||||||||| | || ||| |||||| Sbjct: 15360626 cccatcgcgttcaacgccaccgacctcgccgccgacgagagcacctccaccgggaaggtg 15360567 Query: 508 cggctctacggcacgctgcagctgcccaagggcatggagtccgtgaaccaca 559 |||||||||||| |||||||||||| | || |||||| | |||||||||| Sbjct: 15360566 tggctctacggcaagctgcagctgcctcacgggatggagacggtgaaccaca 15360515 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 tgggtggcgtggggcatcaaccccaccggcga 344 |||||| |||||| ||||||||||||||||| Sbjct: 15360730 tgggtgtcgtgggcgatcaaccccaccggcga 15360699
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgaggg---agccggcggtaaggtg 507 ||||| |||||||| |||||||| ||||||||||||||| | || ||| |||||| Sbjct: 15314909 cccatcgcgttcaacgccaccgacctcgccgccgacgagagcacctccaccgggaaggtg 15314850 Query: 508 cggctctacggcacgctgcagctgcccaagggcatggagtccgtgaaccaca 559 |||||||||||| |||||||||||| | || |||||| | |||||||||| Sbjct: 15314849 tggctctacggcaagctgcagctgcctcacgggatggagacggtgaaccaca 15314798 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 tgggtggcgtggggcatcaaccccaccggcga 344 |||||| |||||| ||||||||||||||||| Sbjct: 15315013 tgggtgtcgtgggcgatcaaccccaccggcga 15314982
>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151541 Score = 60.0 bits (30), Expect = 8e-06 Identities = 92/112 (82%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 451 cccattgcgttcaaggccaccgagctcgccgccgacgaggg---agccggcggtaaggtg 507 ||||| |||||||| |||||||| ||||||||||||||| | || ||| |||||| Sbjct: 136019 cccatcgcgttcaacgccaccgacctcgccgccgacgagagcacctccaccgggaaggtg 135960 Query: 508 cggctctacggcacgctgcagctgcccaagggcatggagtccgtgaaccaca 559 |||||||||||| |||||||||||| | || |||||| | |||||||||| Sbjct: 135959 tggctctacggcaagctgcagctgcctcacgggatggagacggtgaaccaca 135908 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 313 tgggtggcgtggggcatcaaccccaccggcga 344 |||||| |||||| ||||||||||||||||| Sbjct: 136123 tgggtgtcgtgggcgatcaaccccaccggcga 136092
>ref|XM_483411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 50.1 bits (25), Expect = 0.008 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 239 tgcactggacctacgacgcggcggcct---cgtcgctctccgtggcgttcg 286 ||||||||||||||||||| ||||| | ||||||| ||||||||||||| Sbjct: 214 tgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggcgttcg 264
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 50.1 bits (25), Expect = 0.008 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 239 tgcactggacctacgacgcggcggcct---cgtcgctctccgtggcgttcg 286 ||||||||||||||||||| ||||| | ||||||| ||||||||||||| Sbjct: 102746 tgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggcgttcg 102696
>dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence Length = 1418 Score = 50.1 bits (25), Expect = 0.008 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Plus Query: 239 tgcactggacctacgacgcggcggcct---cgtcgctctccgtggcgttcg 286 ||||||||||||||||||| ||||| | ||||||| ||||||||||||| Sbjct: 214 tgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggcgttcg 264
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 255 cgcggcggcctcgtcgctctccgtggcg 282 |||||||||||||||||||| ||||||| Sbjct: 812134 cgcggcggcctcgtcgctctgcgtggcg 812161 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 ccggcgagcggcgccggctgg 315 ||||||||||||||||||||| Sbjct: 2432573 ccggcgagcggcgccggctgg 2432553
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 gcagcagcaccggcgccgccac 102 |||||||||||||||||||||| Sbjct: 188389 gcagcagcaccggcgccgccac 188410
>gb|AC008364.5|AC008364 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone BACR09G02, complete sequence Length = 166642 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 cttgccgccctgctcgtccttg 136 |||||||||||||||||||||| Sbjct: 38180 cttgccgccctgctcgtccttg 38201
>ref|XM_308314.2| Anopheles gambiae str. PEST ENSANGP00000009384 (ENSANGG00000007024), partial mRNA Length = 17172 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 525 gcagctgcccaagggcatggag 546 |||||||||||||||||||||| Sbjct: 10311 gcagctgcccaagggcatggag 10332
>gb|AE003729.3| Drosophila melanogaster chromosome 3R, section 67 of 118 of the complete sequence Length = 232477 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 cttgccgccctgctcgtccttg 136 |||||||||||||||||||||| Sbjct: 108132 cttgccgccctgctcgtccttg 108153
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 302 gcggcgccggctgggtggcgtggggc 327 |||||||||||||||||| ||||||| Sbjct: 1460747 gcggcgccggctgggtggagtggggc 1460772
>ref|XM_470579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 582 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgggtggcgtggggcatcaac 333 ||||||||||||||||||||| Sbjct: 223 tgggtggcgtggggcatcaac 243
>gb|AC186553.1| Pan troglodytes chromosome 6 clone CH251-664D19, complete sequence Length = 214787 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 49095 acaaaaacctctaggttctct 49115
>gb|AC183596.2| Pan troglodytes BAC clone CH251-679I13 from chromosome 6, complete sequence Length = 214528 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 76958 acaaaaacctctaggttctct 76938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgggtggcgtggggcatcaac 333 ||||||||||||||||||||| Sbjct: 4881871 tgggtggcgtggggcatcaac 4881891
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 cgctgcagctgcccaagggca 541 ||||||||||||||||||||| Sbjct: 3741317 cgctgcagctgcccaagggca 3741297
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 tgggtggcgtggggcatcaac 333 ||||||||||||||||||||| Sbjct: 113676 tgggtggcgtggggcatcaac 113656
>emb|AJ245406.1|DME245406 Drosophila melanogaster partial kettin gene Length = 37107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 14635 cagctgcccaagggcatggag 14655
>gb|AC183951.3| Pan troglodytes BAC clone CH251-427H8 from chromosome 6, complete sequence Length = 166133 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 1801 acaaaaacctctaggttctct 1781
>emb|AL109922.9|HSDJ401P4 Human DNA sequence from clone RP3-401P4 on chromosome 6q11.2-12 Contains part of the gene for a novel EGF-like domain containing protein, complete sequence Length = 94585 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 41579 acaaaaacctctaggttctct 41599
>emb|AJ271740.1|DME271740 Drosophila melanogaster D-Titin gene, exons 1-37 Length = 70398 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 16390 cagctgcccaagggcatggag 16410
>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 154234 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 2358 cagctgcccaagggcatggag 2338
>gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 cctgctcgtccttgtctcgcc 143 ||||||||||||||||||||| Sbjct: 58375 cctgctcgtccttgtctcgcc 58395
>gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 144056 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 76334 cagctgcccaagggcatggag 76314
>gb|AC182732.2| Pan troglodytes BAC clone CH251-716H13 from chromosome 6, complete sequence Length = 172310 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 30209 acaaaaacctctaggttctct 30229
>gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromosome 6, complete sequence Length = 226479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 acaaaaacctctaggttctct 44 ||||||||||||||||||||| Sbjct: 134441 acaaaaacctctaggttctct 134421
>ref|NM_144448.2| Drosophila melanogaster sallimus CG1915-RC, transcript variant C (sls), mRNA Length = 54815 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 10897 cagctgcccaagggcatggag 10917
>gb|AF421538.2| Crypthecodinium cohnii BiP (BiP) mRNA, partial cds Length = 2238 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcagcaccggcgccgccac 102 ||||||||||||||||||||| Sbjct: 2002 cagcagcaccggcgccgccac 1982
>ref|NM_079937.2| Drosophila melanogaster sallimus CG1915-RA, transcript variant A (sls), mRNA Length = 15272 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 10897 cagctgcccaagggcatggag 10917
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ccgagctcgccgccgacgagg 490 ||||||||||||||||||||| Sbjct: 4758907 ccgagctcgccgccgacgagg 4758887
>tpg|BK000146.1| TPA: TPA_exp: Drosophila melanogaster TITIN mRNA, complete cds Length = 53712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 15418 cagctgcccaagggcatggag 15438
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgggtggcgtggggcatcaac 333 ||||||||||||||||||||| Sbjct: 4881086 tgggtggcgtggggcatcaac 4881106
>dbj|AK062839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H03, full insert sequence Length = 750 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgggtggcgtggggcatcaac 333 ||||||||||||||||||||| Sbjct: 275 tgggtggcgtggggcatcaac 295
>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete sequence Length = 425677 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 cctgctcgtccttgtctcgcc 143 ||||||||||||||||||||| Sbjct: 68056 cctgctcgtccttgtctcgcc 68036
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 258297 cagctgcccaagggcatggag 258277
>dbj|AB026845.2| Drosophila melanogaster mRNA for kettin, complete cds Length = 15244 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 cagctgcccaagggcatggag 546 ||||||||||||||||||||| Sbjct: 10869 cagctgcccaagggcatggag 10889
>dbj|D31792.1| Streptomyces griseus DNA for serine/threonine protein kinases, complete cds Length = 3866 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cgagctcgccgccgacgaggg 491 ||||||||||||||||||||| Sbjct: 3726 cgagctcgccgccgacgaggg 3746
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 agccggcgagcggcgccggc 312 |||||||||||||||||||| Sbjct: 1212385 agccggcgagcggcgccggc 1212404
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 ggccaagccggcgagcggcgccgg 311 ||||||||||||| |||||||||| Sbjct: 2387660 ggccaagccggcgcgcggcgccgg 2387637
>ref|XM_364998.1| Magnaporthe grisea 70-15 predicted protein (MG09843.4) partial mRNA Length = 663 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tccgcgacgcagcagcaccg 92 |||||||||||||||||||| Sbjct: 304 tccgcgacgcagcagcaccg 323
>gb|AE009307.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 77 of 187 of the complete sequence Length = 11913 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cgatctcccggccctcggcg 232 |||||||||||||||||||| Sbjct: 6639 cgatctcccggccctcggcg 6658
>gb|AE008307.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 111 of 187 of the complete sequence Length = 11814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cgatctcccggccctcggcg 232 |||||||||||||||||||| Sbjct: 3088 cgatctcccggccctcggcg 3069
>ref|NM_020184.3| Homo sapiens cyclin M4 (CNNM4), mRNA Length = 4814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cagcagcaccggcgccgcca 101 |||||||||||||||||||| Sbjct: 179 cagcagcaccggcgccgcca 160
>ref|XM_745656.1| Aspergillus fumigatus Af293 transcription factor TFIID complex 145 kDa subunit (Afu6g08600) partial mRNA Length = 3282 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acgcagcagcaccggcgccg 98 |||||||||||||||||||| Sbjct: 1944 acgcagcagcaccggcgccg 1963
>gb|AY220493.1| Yersinia frederiksenii plasmid pMYF1 TcYF3 gene, complete cds Length = 2937 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcgagaagttccctgctggc 192 |||||||||||||||||||| Sbjct: 1155 gcgagaagttccctgctggc 1136
>ref|XM_845107.1| PREDICTED: Canis familiaris similar to retinal degeneration B2 homolog (LOC484155), mRNA Length = 1137 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 gctgcccaagggcatggagt 547 |||||||||||||||||||| Sbjct: 417 gctgcccaagggcatggagt 436
>emb|AL137780.10| Human DNA sequence from clone RP11-24B19 on chromosome 13q14.2-14.3 Contains a protease inhibitor pseudogene and the 3' end of the DDX26 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 (HDB, DBI-1, DICE1, NOTCHL2,Notchl2, DKFZP434B105), complete sequence Length = 110515 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttccctgctggcaggagcta 200 |||||||||||||||||||| Sbjct: 19435 ttccctgctggcaggagcta 19454
>emb|AL954251.1| Pan troglodytes chromosome 22 clone PTB-044H21 map 22q22.3, complete sequence Length = 149587 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cggcgccggctgggtggcgtgggg 326 ||||||| |||||||||||||||| Sbjct: 105975 cggcgcctgctgggtggcgtgggg 105998
>gb|BC063295.1| Homo sapiens cyclin M4, mRNA (cDNA clone MGC:71640 IMAGE:30340626), complete cds Length = 4814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cagcagcaccggcgccgcca 101 |||||||||||||||||||| Sbjct: 179 cagcagcaccggcgccgcca 160
>gb|AE012393.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 301 of 460 of the complete genome Length = 11733 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 cgcggccaagccggcgagcggcgc 308 ||||||||||||||| |||||||| Sbjct: 9327 cgcggccaagccggccagcggcgc 9304
>ref|NM_136675.1| Drosophila melanogaster CG1625-RA (CG1625), mRNA Length = 3472 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gcgcagtcgctcctcgcctt 377 |||||||||||||||||||| Sbjct: 120 gcgcagtcgctcctcgcctt 139
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cctctaggttctctaaccag 50 |||||||||||||||||||| Sbjct: 85762 cctctaggttctctaaccag 85781
>dbj|AK013671.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900052O17 product:unclassifiable, full insert sequence Length = 814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aacaaaaacctctaggttct 42 |||||||||||||||||||| Sbjct: 30 aacaaaaacctctaggttct 11
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gtctcgccggcagcggccgc 155 |||||||||||||||||||| Sbjct: 2365231 gtctcgccggcagcggccgc 2365212
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 cgcggccaagccggcgagcggcgc 308 ||||||||||||||| |||||||| Sbjct: 1588391 cgcggccaagccggccagcggcgc 1588414
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aacaaaaacctctaggttct 42 |||||||||||||||||||| Sbjct: 104300 aacaaaaacctctaggttct 104319
>gb|AC007330.6|AC007330 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR30G11, complete sequence Length = 166854 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gcgcagtcgctcctcgcctt 377 |||||||||||||||||||| Sbjct: 38130 gcgcagtcgctcctcgcctt 38111
>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence Length = 199721 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cagcagcaccggcgccgcca 101 |||||||||||||||||||| Sbjct: 14326 cagcagcaccggcgccgcca 14307
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgagctcgccgccgacgagg 490 |||||||||||||||||||| Sbjct: 5901244 cgagctcgccgccgacgagg 5901225
>gb|AE005026.1| Halobacterium sp. NRC-1 section 57 of 170 of the complete genome Length = 15355 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tctcccggccctcggcgctg 235 |||||||||||||||||||| Sbjct: 6662 tctcccggccctcggcgctg 6681
>gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18 of 73 of the complete sequence Length = 242171 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gcgcagtcgctcctcgcctt 377 |||||||||||||||||||| Sbjct: 221169 gcgcagtcgctcctcgcctt 221150
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ccggcagcggccgctggcgg 161 |||||||||||||||||||| Sbjct: 4147522 ccggcagcggccgctggcgg 4147503
>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198205 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aacaaaaacctctaggttct 42 |||||||||||||||||||| Sbjct: 30705 aacaaaaacctctaggttct 30686 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,883,706 Number of Sequences: 3902068 Number of extensions: 3883706 Number of successful extensions: 105249 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103101 Number of HSP's gapped (non-prelim): 2131 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
