ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHEB1_PSESM (Q884V3) Chemotaxis response regulator protein-gluta... 32 1.1
2CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-gluta... 31 3.1
3CHEB3_PSEU2 (Q4ZQV7) Chemotaxis response regulator protein-gluta... 30 4.0
4CD248_MOUSE (Q91V98) Endosialin precursor (Tumor endothelial mar... 30 4.0
5EMSY_HUMAN (Q7Z589) Protein EMSY 30 6.9
6FTSK_RHIME (Q92L89) DNA translocase ftsK 29 9.0

>CHEB1_PSESM (Q884V3) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 390

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = -3

Query: 289 APTKPASAASRMSPPRMATGQRASRAHSSP*ADANQTPE--AMTGTAQMSAISVTH---- 128
           AP   A+A +R  P R      A  AH      A+ TP     TGTA+  A  +      
Sbjct: 161 APAPSAAAPARAVPSRTVAPAAAPAAH------AHHTPAHPTTTGTAKRKAYKLVAIGTS 214

Query: 127 -----AVMLLLTAMAGGSPSPLPLSQTVPA 53
                A+  +LT +    P+PL L Q +PA
Sbjct: 215 TGGPVALQRVLTQLPANFPAPLVLIQHMPA 244



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>CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 387

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
 Frame = -3

Query: 289 APTKPASAASRMSPPRMATGQRASRAHSSP*ADANQTPEAMT--GTAQMSAISVTH---- 128
           APT  + A +  + P  A   R +   ++P A A+  P   T  GT +  A  +      
Sbjct: 152 APTSSSRAPAPTTAPARAVPTRTAAPATAPAAHAHHAPAHPTTSGTPKRKAYKLVAIGTS 211

Query: 127 -----AVMLLLTAMAGGSPSPLPLSQTVPA 53
                A+  +LT +    P+PL L Q +PA
Sbjct: 212 TGGPVALQRVLTQLPASFPAPLVLIQHMPA 241



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>CHEB3_PSEU2 (Q4ZQV7) Chemotaxis response regulator protein-glutamate|
           methylesterase 3 (EC 3.1.1.61)
          Length = 386

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
 Frame = -3

Query: 289 APTKPASAASRMSP-PRMATGQRASRAHSSP*ADANQTPEAMT--GTAQMSAISVTH--- 128
           AP+  +S AS  +P P  A   R +   ++P A  +  P   T  GTA+  A  +     
Sbjct: 150 APSTLSSRASAPAPAPARAVPSRTATPAAAPAAPTSHAPAHPTTSGTAKRKAYKLVAIGT 209

Query: 127 ------AVMLLLTAMAGGSPSPLPLSQTVPA 53
                 A+  +LT +    P+PL L Q +PA
Sbjct: 210 STGGPVALQRVLTQLPANFPAPLVLIQHMPA 240



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>CD248_MOUSE (Q91V98) Endosialin precursor (Tumor endothelial marker 1) (CD248|
           antigen)
          Length = 765

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
 Frame = -3

Query: 277 PASAASRMSPPRMATGQRASRAHSSP*ADANQTPEAMTG-------TAQMSAISVTHAVM 119
           P  + S + PP + T  R+S  H +P   ANQ P   +        T Q S+IS TH+  
Sbjct: 591 PQLSVSALQPP-LPTNSRSS-VHETPVPAANQPPAFPSSPLPPQRPTNQTSSISPTHSYS 648

Query: 118 LLLTAMAGGSPSP--LPLSQTVPA 53
                   G PSP  +P   +VP+
Sbjct: 649 RAPLVPREGVPSPKSVPQLPSVPS 672



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>EMSY_HUMAN (Q7Z589) Protein EMSY|
          Length = 1322

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = -3

Query: 268 AASRMSPPRMATGQRASRAHSSP*ADANQTPEAMTGTAQMSAISVTHAVMLLLTAMAGGS 89
           A++   PP + T  ++S   +S    ++ TP  +  T  ++A+  +   +++ T   G S
Sbjct: 313 ASTTQKPPVVITASQSSLVSNSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVS 372

Query: 88  PSPLPLSQT 62
            S + ++ T
Sbjct: 373 TSAIKMAST 381



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>FTSK_RHIME (Q92L89) DNA translocase ftsK|
          Length = 881

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 289 APTKPA--SAASRMSPPRMATGQRASR 215
           AP KPA   A SR++PPR   GQR  R
Sbjct: 338 APPKPALAMAGSRVAPPRPKAGQRVER 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,984,412
Number of Sequences: 219361
Number of extensions: 783852
Number of successful extensions: 3298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3295
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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