>RL2_METTH (O26113) 50S ribosomal protein L2P|
          Length = 241

 Score = 33.1 bits (74), Expect = 0.53
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 357 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDG 241
           V  +    P GGG R+HP R   V    PP ++VG +AA   G
Sbjct: 196 VAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTG 238

>YDZC_SCHPO (O13719) Hypothetical protein C14C4.12c in chromosome I|
          Length = 297

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 386 KPWQRRVRRWYSRTSNSSQMAVAPASTP---PEIFLFLHSKRSAGLPPPRTEWTGFSRP 219
           K W RR R+W  R S + + +   A  P   P  FL +H+  +     P T  +G S P
Sbjct: 89  KIWLRRERQWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147

>PANE_ARCFU (O28578) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169)|
           (Ketopantoate reductase) (KPA reductase) (KPR)
          Length = 294

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 486 QVLRDLHLWNVGRALVDEGRGV 421
           +V+R+ HLW V RA+ DEGR V
Sbjct: 198 EVVRNPHLWEVARAVADEGRQV 219

>Y2133_ARCFU (O28147) Hypothetical protein AF2133|
          Length = 286

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +1

Query: 223 REKPVHSVLGGGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEY-HLLTLLCHGFIL-- 393
           R+K + + L  G   D +LW     +G +L  A  + +  ++L+   +  ++  G +L  
Sbjct: 36  RQKDLSAKLRWGI-VDEILWTIIVANGAILFTAHYVLIGLKILDLIAIFVVMLSGVMLYA 94

Query: 394 TLGILFLWSNASAFVNKCPPNIPEVKIPEDLAVNVARSLRYE 519
            L  LFL+    AF    PP+ P+  +   L   V+  + YE
Sbjct: 95  PLAFLFLYPVVRAFEKNFPPSNPQFLLSHGLICTVSSLIVYE 136

>RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)|
          Length = 239

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 357 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 232
           V  +    P GGG R+HP +   +    PP ++VG +A+   G  G
Sbjct: 192 VAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 237

>HM13_MOUSE (Q9D8V0) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal|
           peptide peptidase) (Presenilin-like protein 3)
          Length = 378

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 307 VLAGAT--AIWLLFEVLEYHLLTLLCHGFILTLGILFLWSNASAFVNK-CPPNIP 462
           ++A  T   ++L F++     + LL   +   LGIL L    S F+NK  P N P
Sbjct: 80  IIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFP 134

>RL2_METMA (Q8PV47) 50S ribosomal protein L2P|
          Length = 238

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 357 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 238
           V  + +  P GGGA +HP +   V    PP ++VG +AA   G+
Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236

>RL2_METAC (Q8TRU4) 50S ribosomal protein L2P|
          Length = 238

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 357 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 238
           V  + +  P GGGA +HP +   V    PP ++VG +AA   G+
Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236

>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 253 GGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTL 399
           G K ADLL W++ + SG V  G     L   +L + ++++  H  +L L
Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLL 388

>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 410 KRMPRVRMKPWQRRVRRWYSRTSNSSQMAVAPASTPPEIFLFLHSKRSAGLPPPRTEWT 234
           K +PR    P    V+   S+ ++   +     S+PP   L+  S R+A LPP  +  T
Sbjct: 647 KMVPRTPPSPTSEDVQTEGSKITSKMPVGSTQGSSPPTPALWATSPRAATLPPKSSSGT 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,864,542
Number of Sequences: 219361
Number of extensions: 748603
Number of successful extensions: 3000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2994
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)