>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +3

Query: 183 PSKLRAVPSQSDPSKPAAFGQPTYDGVIAGRVSGRTWKEPRTRRSSALMVSRKP-VPLEQ 359
           PS  R +PS S PS+      P     +    +G +  E   R     +   KP +P  Q
Sbjct: 162 PSPSRTLPSSSSPSRATPQLPPRTTSPVIALQNGLSEDEALQRALELSLAEAKPQIPSSQ 221

Query: 360 RVRDKSLKKAYQVRVAELKDEIRQNK 437
              D +L +A     AE + +  Q++
Sbjct: 222 EEEDLALAQALSASEAEYQQQQAQSR 247

>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12|
            (Thyroid hormone receptor-associated protein complex 230
            kDa component) (Trap230) (Activator-recruited cofactor
            240 kDa component) (ARC240) (CAG repeat protein 45)
            (OPA-containin
          Length = 2212

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 177  PRPSKLRAV--PSQSDPSKPAAFGQPTYDGVIAGRVSGRTWKEPRTRRSSALMVSRKPVP 350
            PR    R V  P Q  P++P      TY GV+   ++G    EP + ++S     +  VP
Sbjct: 1888 PRVDPYRPVRLPMQKLPTRP------TYPGVLPTTMTGVMGLEPSSYKTSVYRQQQPAVP 1941

Query: 351  LEQRVRDK 374
              QR+R +
Sbjct: 1942 QGQRLRQQ 1949

>K1949_MACMU (Q5TM66) Protein KIAA1949 homolog|
          Length = 613

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 285 RTWKEPRTRRSSALMVSRKPVPLEQRVRDKS 377
           R  ++ + +RS  L+  RKPVPLE R R  S
Sbjct: 95  RQQQQQQQQRSEELLAERKPVPLEARERRPS 125

>Y004_MYCTU (P71573) UPF0232 protein Rv0004/MT0004|
          Length = 187

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 240 GQPTYDGVIAGRVSGR--TWKEPRTRRSSALMVSRKPVPLEQRVRDKSLKKAYQVRVAE 410
           G+     V +GRV+GR  +W  P           R P PL +  R+ + K+ + VRVAE
Sbjct: 44  GRGRVASVASGRVAGRRRSWSGPGPD-------IRDPQPLGKAARELAKKRGWSVRVAE 95

>Y004_MYCBO (Q7U313) UPF0232 protein Mb0004|
          Length = 187

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 240 GQPTYDGVIAGRVSGR--TWKEPRTRRSSALMVSRKPVPLEQRVRDKSLKKAYQVRVAE 410
           G+     V +GRV+GR  +W  P           R P PL +  R+ + K+ + VRVAE
Sbjct: 44  GRGRVASVASGRVAGRRRSWSGPGPD-------IRDPQPLGKAARELAKKRGWSVRVAE 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,202,026
Number of Sequences: 219361
Number of extensions: 746163
Number of successful extensions: 3112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3108
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)