ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39e12 |
|---|---|
| Clone Library Name | barley_pub |
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 51.6 bits (122), Expect = 2e-06 Identities = 47/166 (28%), Positives = 64/166 (38%), Gaps = 13/166 (7%) Frame = +1 Query: 112 VLAPVTKDAATSLYKIPFHDGTNLV-----LDVAGPLVWSTCDGGQPPPAADIT-CSSPT 273 ++ PV DA+T L+ T L+ +D+ G +W C+ C S Sbjct: 41 LVLPVQNDASTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFCHSTQ 100 Query: 274 CLLANAYPAAGCPA---PSCGSDRHDKPCTAYPSNPVTGACAAGSLFRARLVANTTDGNR 444 C AN + CPA P C H C +NP+T G L + L + T G+ Sbjct: 101 CSRANTHQCLSCPAASRPGC----HKNTCGLMSTNPITQQTGLGELGQDVLAIHATQGST 156 Query: 445 PVSAVTVGV---LAACAPTKLL-ASLPRGSTGVXXXXXXXXXXPAQ 570 V V L +CAP+ LL LPR GV P Q Sbjct: 157 QQLGPLVTVPQFLFSCAPSFLLQKGLPRNIQGVAGLGHAPISLPNQ 202
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 50.8 bits (120), Expect = 3e-06 Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 13/166 (7%) Frame = +1 Query: 112 VLAPVTKDAATSLYKIPFHDGTNLV-----LDVAGPLVWSTCDGGQPPPAADIT-CSSPT 273 V+ PV D +T L+ T L+ +D+ G +W C+ C S Sbjct: 34 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 93 Query: 274 CLLANAYPAAGCPA---PSCGSDRHDKPCTAYPSNPVTGACAAGSLFRARLVANTTDGNR 444 C AN + CPA P C H C +NP+T G L L + T G+ Sbjct: 94 CSRANTHQCLSCPAASRPGC----HKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGST 149 Query: 445 PVSAVTVGV---LAACAPTKLL-ASLPRGSTGVXXXXXXXXXXPAQ 570 V V L +CAP+ L+ LPR + GV P Q Sbjct: 150 QQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQ 195
>TLX3_CHICK (O93367) T-cell leukemia homeobox protein 3 (Homeobox protein| Hox-11L2) (Homeobox TLX-3) Length = 297 Score = 32.7 bits (73), Expect = 0.75 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 551 PEPASPATPVEPRGNDASSFVGAHAARTPTVTALTGRFPSV 429 P P P P PRG D ++F+G P AL G FP++ Sbjct: 39 PPPPPPPPPPPPRGPDGAAFLGGPRGGAP-YPALPGPFPAI 78
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 32.7 bits (73), Expect = 0.75 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +1 Query: 109 PVLAPVTKDAATSLYKIPFHDGTNLVLDVAGPLVWSTCDGGQPPPAADITCSSPTCLLAN 288 P+LAP++ A + P H + G LV S G +PPP A ++ +P L Sbjct: 84 PILAPLS--TAGEQKRPPPHRSSKPAPTSVGQLVVSAAAGPKPPPVASVSILAPKSLGQL 141 Query: 289 AYPAAGCPAPS 321 A+ P P+ Sbjct: 142 VISASAMPRPT 152
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 32.3 bits (72), Expect = 0.98 Identities = 22/71 (30%), Positives = 31/71 (43%) Frame = +1 Query: 109 PVLAPVTKDAATSLYKIPFHDGTNLVLDVAGPLVWSTCDGGQPPPAADITCSSPTCLLAN 288 PVLAP++ A + P +N G LV S +PPP A ++ +P L Sbjct: 84 PVLAPLS--IAGEQKRPPPPHSSNRAAKSVGQLVVSAAAASKPPPVASVSILAPKSLGQL 141 Query: 289 AYPAAGCPAPS 321 A+ P PS Sbjct: 142 VISASAMPRPS 152
>TRI2_STRCO (Q9RKB9) Putative tricorn protease homolog 2 (EC 3.4.21.-)| Length = 1171 Score = 32.0 bits (71), Expect = 1.3 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 21/114 (18%) Frame = +1 Query: 124 VTKDAATSLYKIPFHDGTNLVLDVAGP-----LVWSTCDGGQPPPAADITCSSPTCLLAN 288 + D A + HDG L+LDVA P L D G PP A D + T A+ Sbjct: 393 LVSDPAGDRLAVASHDGRLLILDVAEPDTEVTLALEAVDAGYPPDAGDEDAAG-TAARAD 451 Query: 289 AYPAAGCPAPSCGSDRHDKPC----------------TAYPSNPVTGACAAGSL 402 + P AP+ +D D T P +P T A A G + Sbjct: 452 SAP----DAPAEDTDARDIAAGTGTGDIADADAAAGGTVTPGSPGTPATAGGQV 501
>GALP_ECOLI (P0AEP1) Galactose-proton symporter (Galactose transporter)| Length = 464 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = +1 Query: 196 AGPLVWSTCDGGQPPPAAD--ITCSSPTCLLAN 288 AGPL+W C QP D ITCS+ T +AN Sbjct: 366 AGPLIWVLCSEIQPLKGRDFGITCSTATNWIAN 398
>GALP_ECOL6 (P0AEP2) Galactose-proton symporter (Galactose transporter)| Length = 464 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = +1 Query: 196 AGPLVWSTCDGGQPPPAAD--ITCSSPTCLLAN 288 AGPL+W C QP D ITCS+ T +AN Sbjct: 366 AGPLIWVLCSEIQPLKGRDFGITCSTATNWIAN 398
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 30.8 bits (68), Expect = 2.9 Identities = 23/68 (33%), Positives = 28/68 (41%) Frame = -1 Query: 566 AGSARPEPASPATPVEPRGNDASSFVGAHAARTPTVTALTGRFPSVVLATSLARKRLPAA 387 A +ARP A+PA P PR GA AAR T T G + T+ R PA Sbjct: 179 ASAARPATAAPAAPA-PRP-------GAPAARPGTTTTRPGTTTARPATTTAQRPGAPAG 230 Query: 386 HAPVTGLD 363 P + Sbjct: 231 RGPAVAAE 238
>TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 558 Score = 30.8 bits (68), Expect = 2.9 Identities = 32/131 (24%), Positives = 42/131 (32%), Gaps = 11/131 (8%) Frame = +1 Query: 109 PVLAPVTKDAATSLYKIPFHDGTNLVLDVAGPLVWSTCDGGQPPPAADITCSSPTCLLAN 288 P +P + A +L ++ F DG G PPP+ T ++ C L Sbjct: 369 PASSPTPEPLAEALLQLQFDDGVG---------------GSGPPPSTTTTTTTTQCALGG 413 Query: 289 AYPAAGCPAPSCGSDRHDKPCTAY----------PSNPVTGACAAGSLFRARLVANTTDG 438 P G G+ D P P G AG F L T G Sbjct: 414 GIPDPGGSPLDLGALLGDPPFDTIDAAELQRLLGPPETPPGGIGAGGGFGELLSLPTNFG 473 Query: 439 NRPVS-AVTVG 468 + P S A T G Sbjct: 474 DPPSSTAATFG 484
>CO4_RAT (P08649) Complement C4 precursor [Contains: Complement C4 beta chain;| Complement C4 alpha chain; C4a anaphylatoxin; Complement C4 gamma chain] Length = 1737 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +1 Query: 367 NPVTGACAAGSLFRARLVANTTDGNRPVSAVTVGVLAACAPTKLLASLPRGS 522 +PV G C AG A+ V+ RPV+ V AA P K++A RGS Sbjct: 867 SPVEGLCLAGGGLLAQQVSVPAGSARPVAFSVVPTAAASIPLKVVA---RGS 915
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 30.0 bits (66), Expect = 4.9 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Frame = +1 Query: 283 ANAYPAAGCPAPSC----GSDRHDKPCTAYPSNPVTGACAAGSLFRARLVANTTDGNRPV 450 ++A PA GCP P+C G P P TG G L ++ G P Sbjct: 129 SSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPATGRKPGGGLL-------SSPGAAPA 181 Query: 451 SAVTVGVLAACAPTKLLASLPRGSTG 528 SA AP +AS + G Sbjct: 182 SAAVTSASVVPAPAAPVASSSAAAGG 207
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/88 (23%), Positives = 31/88 (35%) Frame = +1 Query: 229 GQPPPAADITCSSPTCLLANAYPAAGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFR 408 G AD+T +P + A P P+P P ++PVT + Sbjct: 465 GPTVSTADVTSPTPAGTTSGASPVTPSPSPWDNGTESKAPDMTSSTSPVTTPTPNATSPT 524 Query: 409 ARLVANTTDGNRPVSAVTVGVLAACAPT 492 + T + P AVT A +PT Sbjct: 525 PAVTTPTPNATSPTPAVTTPTPNATSPT 552
>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein| 1.8) (Keratin-associated protein 1.9) Length = 177 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/45 (28%), Positives = 18/45 (40%) Frame = +1 Query: 238 PPAADITCSSPTCLLANAYPAAGCPAPSCGSDRHDKPCTAYPSNP 372 PP ++C+ PTC + A+ C CG C Y P Sbjct: 131 PPCCVVSCTPPTCCQLHHAEASCCRPSYCGQSCCRPVCCCYSCEP 175
>KDGT2_SALTY (Q8ZQZ4) 2-keto-3-deoxygluconate permease 2 (KDG permease 2)| Length = 317 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -1 Query: 572 TCAGSARPEPASPATPVEPRGNDASSFVGAHAARTPTVTALTGRFPSVVLATSLARKRLP 393 T +G+A PA+ A ++P D +S A A + +TAL F +V + RK P Sbjct: 254 TTSGNAVATPAAIAL-LDPHFTDLASTAAAQVAASTIITALCAPFLTVWIKKRYDRKLNP 312 Query: 392 AA 387 AA Sbjct: 313 AA 314
>KDGT2_SALTI (Q8Z8H3) 2-keto-3-deoxygluconate permease 2 (KDG permease 2)| Length = 317 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -1 Query: 572 TCAGSARPEPASPATPVEPRGNDASSFVGAHAARTPTVTALTGRFPSVVLATSLARKRLP 393 T +G+A PA+ A ++P D +S A A + +TAL F +V + RK P Sbjct: 254 TTSGNAVATPAAIAL-LDPHFTDLASTAAAQVAASTIITALCAPFLTVWIKKRYDRKLNP 312 Query: 392 AA 387 AA Sbjct: 313 AA 314
>VGLI_PRVRI (P07646) Glycoprotein GP63 precursor| Length = 350 Score = 29.6 bits (65), Expect = 6.4 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Frame = -1 Query: 548 EPASPATPVEPRGNDAS----------SFVGAHAARTPTVTALTGRFPSVVLATSLARKR 399 EP P TP PRG A+ GA A TP L V+ A+ ++R Sbjct: 211 EPEPPTTPAPPRGTGATPEPRSDEEEEDEEGATTAMTPVPGTLDANGTMVLNASVVSRVL 270 Query: 398 LPAAHA 381 L AA+A Sbjct: 271 LAAANA 276
>PALF_EMENI (P78612) pH-response regulator protein palF/RIM8| Length = 775 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -1 Query: 560 SARPEPASPATPVEPRGNDASSFVGAHAARTPTVTALTGRFPSVVLATSLARKRLPAAHA 381 S+ E A P PV P + + + H + TV +TG P+++ A S+ ++ A Sbjct: 646 SSAVEAAMPTAPVLPEDDHLNDY---HHLPSTTVNGMTGMAPALMSAESVQTVIAGSSSA 702 Query: 380 PVT 372 P+T Sbjct: 703 PLT 705
>MURG_PROMM (Q7V466) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 361 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -1 Query: 461 VTALTGRFPSVV-LATSLARKRLPAAHAPVTG 369 VT L GRF VV + S+A KR+P + A VTG Sbjct: 126 VTRLLGRFCQVVAVGLSVAAKRIPGSKAVVTG 157
>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein| 1.1) (High sulfur keratin-associated protein 1.1) (Keratin-associated protein 1.6) (Keratin-associated protein 1.7) Length = 177 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = +1 Query: 238 PPAADITCSSPTCLLANAYPAAGCPAPSCGSDRHDKPCTAYPSNP 372 PP ++C+ P+C + A+ C CG C Y S P Sbjct: 131 PPCCVVSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCCCYCSEP 175
>KRB2D_SHEEP (P08131) Keratin, high-sulfur matrix protein, B2D| Length = 181 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +1 Query: 223 DGGQPPPAADITCSSPTCLLANAYPAAGCPAPS-CGSDRHDKPCTAYPS 366 +G PP ++C+SP+C Y A C PS CG C P+ Sbjct: 119 EGTSLPPCCVVSCTSPSCCQL-YYAQASCCRPSYCGQSCCRPACCCQPT 166
>KRB2C_SHEEP (P02440) Keratin, high-sulfur matrix protein, B2C| Length = 151 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +1 Query: 223 DGGQPPPAADITCSSPTCLLANAYPAAGCPAPS-CGSDRHDKPCTAYPS 366 +G PP ++C+SP+C Y A C PS CG C P+ Sbjct: 89 EGTSLPPCCVVSCTSPSCCQL-YYAQASCCRPSYCGQSCCRPACCCQPT 136
>KRB2B_SHEEP (P02439) Keratin, high-sulfur matrix protein, B2B| Length = 156 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +1 Query: 223 DGGQPPPAADITCSSPTCLLANAYPAAGCPAPS-CGSDRHDKPCTAYPS 366 +G PP ++C+SP+C Y A C PS CG C P+ Sbjct: 99 EGTSLPPCCVVSCTSPSCCQL-YYAQASCCRPSYCGQSCCRPACCCQPT 146
>CO4_MOUSE (P01029) Complement C4 precursor [Contains: Complement C4 beta chain;| Complement C4 alpha chain; C4a anaphylatoxin; Complement C4 gamma chain] Length = 1738 Score = 29.3 bits (64), Expect = 8.3 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +1 Query: 370 PVTGACAAGSLFRARLVANTTDGNRPVSAVTVGVLAACAPTKLLA 504 PV G C AG A+ V RPV+ V AA P K++A Sbjct: 869 PVEGLCLAGGGMMAQQVTVPAGSARPVAFSVVPTAAANVPLKVVA 913 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,240,379 Number of Sequences: 219361 Number of extensions: 804951 Number of successful extensions: 3900 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3871 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
