ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4ref|XM_525484.1| PREDICTED: Pan troglodytes similar to Autoimmun... 42 2.0
5ref|XM_531580.1| PREDICTED: Pan troglodytes LOC474134 (LOC474134... 42 2.0
6emb|Z97990.1|HSAPECED Homo Sapiens mRNA for AIRE protein 42 2.0
7emb|AJ009610.1|HSAJ9610 Homo sapiens AIRE gene 42 2.0
8emb|AL954247.2| Pan troglodytes chromosome 22 clone CH251-479I13... 42 2.0
9ref|NM_000383.1| Homo sapiens autoimmune regulator (autoimmune p... 42 2.0
10dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.0
11dbj|AP001060.1| Homo sapiens genomic DNA, chromosome 21, clone:D... 42 2.0
12dbj|AB006684.1| Homo sapiens APECED gene for AIRE-1, AIRE-2, AIR... 42 2.0
13dbj|AB006682.1| Homo sapiens APECED mRNA for AIRE-1, complete cds 42 2.0
14ref|XM_519005.1| PREDICTED: Pan troglodytes similar to RING-box ... 40 8.0
15ref|XM_526332.1| PREDICTED: Pan troglodytes similar to zinc RING... 40 8.0
16ref|NM_183237.1| Homo sapiens ring finger protein 7 (RNF7), tran... 40 8.0
17ref|NM_014245.2| Homo sapiens ring finger protein 7 (RNF7), tran... 40 8.0
18ref|XM_369055.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 8.0
19ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome reg... 40 8.0
20gb|BC008627.1| Homo sapiens ring finger protein 7, transcript va... 40 8.0
21gb|BC005966.1| Homo sapiens ring finger protein 7, transcript va... 40 8.0
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.0
23gb|AC112771.6| Homo sapiens 3 BAC RP11-144C9 (Roswell Park Cance... 40 8.0
24emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.0
25gb|BT007348.1| Homo sapiens ring finger protein 7 mRNA, complete... 40 8.0
26gb|AC124303.5| Homo sapiens chromosome 15, clone RP11-145P16, co... 40 8.0
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.0
28emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in ... 40 8.0
29gb|AC100774.2| Homo sapiens chromosome , clone RP13-487P22, comp... 40 8.0
30emb|CR590381.1| full-length cDNA clone CS0DI037YP13 of Placenta ... 40 8.0
31gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 8.0
32gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 ... 40 8.0
33gb|AF312226.1|AF312226 Homo sapiens SAG splice variant mRNA, com... 40 8.0
34gb|AF092878.1|AF092878 Homo sapiens zinc RING finger protein SAG... 40 8.0
35gb|AY889176.1| Synthetic construct Homo sapiens clone FLH023657.... 40 8.0
36emb|AJ323208.1|HSA323208 Homo sapiens genomic sequence surroundi... 40 8.0
37gb|AF164679.1|AF164679 Homo sapiens ring finger protein CKBBP1 m... 40 8.0
38gb|AF142060.1|AF142060 Homo sapiens RING finger protein (ROC2) m... 40 8.0
39dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 8.0
40gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 8.0 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                          
Query: 525    ctccgacgctccgtcttccacgtcggccccatcctccgcgagctgcacgcgcgctacggc 584
              ||||| |||||| ||||| || |||||||  |||||||||| |||||||||||| |||||
Sbjct: 489090 ctccgccgctccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggc 489149
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 525   ctccgacgctccgtcttccacgtcggccccatcctccgcgagctgcacgcgcgctacggc 584
             ||||| |||||| ||||| || |||||||  |||||||||| |||||||||||| |||||
Sbjct: 85331 ctccgccgctccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggc 85390
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>dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G02, full
           insert sequence
          Length = 1700

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 525 ctccgacgctccgtcttccacgtcggccccatcctccgcgagctgcacgcgcgctacggc 584
           ||||| |||||| ||||| || |||||||  |||||||||| |||||||||||| |||||
Sbjct: 179 ctccgccgctccatcttcgacctcggcccgctcctccgcgacctgcacgcgcgccacggc 238
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>ref|XM_525484.1| PREDICTED: Pan troglodytes similar to Autoimmune regulator
           (Autoimmune polyendocrinopathy candidiasis ectodermal
           dystrophy protein) (APECED protein) (LOC470100), mRNA
          Length = 2673

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 465 ggaaaaggagagctgcccccaggcc 489
           |||||||||| ||||||||||||||
Sbjct: 150 ggaaaaggagggctgcccccaggcc 174
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>ref|XM_531580.1| PREDICTED: Pan troglodytes LOC474134 (LOC474134), mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 465 ggaaaaggagagctgcccccaggcc 489
           |||||||||| ||||||||||||||
Sbjct: 150 ggaaaaggagggctgcccccaggcc 174
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>emb|Z97990.1|HSAPECED Homo Sapiens mRNA for AIRE protein
          Length = 2245

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 465 ggaaaaggagagctgcccccaggcc 489
           |||||||||| ||||||||||||||
Sbjct: 270 ggaaaaggagggctgcccccaggcc 294
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>emb|AJ009610.1|HSAJ9610 Homo sapiens AIRE gene
          Length = 36284

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 465   ggaaaaggagagctgcccccaggcc 489
             |||||||||| ||||||||||||||
Sbjct: 23215 ggaaaaggagggctgcccccaggcc 23239
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>emb|AL954247.2| Pan troglodytes chromosome 22 clone CH251-479I13 map 22q22.3, complete
             sequence
          Length = 143192

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 465   ggaaaaggagagctgcccccaggcc 489
             |||||||||| ||||||||||||||
Sbjct: 33727 ggaaaaggagggctgcccccaggcc 33751
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>ref|NM_000383.1| Homo sapiens autoimmune regulator (autoimmune polyendocrinopathy
           candidiasis ectodermal dystrophy) (AIRE), transcript
           variant AIRE-1, mRNA
          Length = 2252

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 465 ggaaaaggagagctgcccccaggcc 489
           |||||||||| ||||||||||||||
Sbjct: 277 ggaaaaggagggctgcccccaggcc 301
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>dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, section 98/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 465  ggaaaaggagagctgcccccaggcc 489
            |||||||||| ||||||||||||||
Sbjct: 2195 ggaaaaggagggctgcccccaggcc 2219
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>dbj|AP001060.1| Homo sapiens genomic DNA, chromosome 21, clone:D4G11, MX1-D21S171
             region, complete sequence
          Length = 42133

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 465   ggaaaaggagagctgcccccaggcc 489
             |||||||||| ||||||||||||||
Sbjct: 26691 ggaaaaggagggctgcccccaggcc 26715
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>dbj|AB006684.1| Homo sapiens APECED gene for AIRE-1, AIRE-2, AIRE-3, complete cds
          Length = 20000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 465  ggaaaaggagagctgcccccaggcc 489
            |||||||||| ||||||||||||||
Sbjct: 5274 ggaaaaggagggctgcccccaggcc 5298
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>dbj|AB006682.1| Homo sapiens APECED mRNA for AIRE-1, complete cds
          Length = 2027

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 465 ggaaaaggagagctgcccccaggcc 489
           |||||||||| ||||||||||||||
Sbjct: 277 ggaaaaggagggctgcccccaggcc 301
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>ref|XM_519005.1| PREDICTED: Pan troglodytes similar to RING-box protein 2 (Rbx2)
           (RING finger protein 7) (Regulator of cullins 2) (CKII
           beta-binding protein 1) (CKBBP1) (Sensitive to apoptosis
           gene protein) (LOC463301), mRNA
          Length = 761

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>ref|XM_526332.1| PREDICTED: Pan troglodytes similar to zinc RING finger protein SAG
            (LOC470949), mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  ctccgtcttccacgtcggcc 552
            ||||||||||||||||||||
Sbjct: 1543 ctccgtcttccacgtcggcc 1524
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>ref|NM_183237.1| Homo sapiens ring finger protein 7 (RNF7), transcript variant 3,
           mRNA
          Length = 1609

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 155 ctccgtcttccacgtcggcc 136
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>ref|NM_014245.2| Homo sapiens ring finger protein 7 (RNF7), transcript variant 1,
           mRNA
          Length = 1616

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 155 ctccgtcttccacgtcggcc 136
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>ref|XM_369055.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00189.4) partial mRNA
          Length = 1803

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 369 gagggtctgacggcggccccgtcg 392
           ||||||||||||||||||| ||||
Sbjct: 220 gagggtctgacggcggccctgtcg 243
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>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    cccaggtccggcccacagcc 185
              ||||||||||||||||||||
Sbjct: 429944 cccaggtccggcccacagcc 429925
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>gb|BC008627.1| Homo sapiens ring finger protein 7, transcript variant 1, mRNA
           (cDNA clone MGC:17274 IMAGE:4177613), complete cds
          Length = 816

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 58  ctccgtcttccacgtcggcc 39
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>gb|BC005966.1| Homo sapiens ring finger protein 7, transcript variant 1, mRNA
           (cDNA clone MGC:14618 IMAGE:4069078), complete cds
          Length = 822

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 48  ctccgtcttccacgtcggcc 29
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 563    cgagctgcacgcgcgctacg 582
              ||||||||||||||||||||
Sbjct: 981441 cgagctgcacgcgcgctacg 981422
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>gb|AC112771.6| Homo sapiens 3 BAC RP11-144C9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 35638

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   ctccgtcttccacgtcggcc 552
             ||||||||||||||||||||
Sbjct: 25526 ctccgtcttccacgtcggcc 25507
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 563    cgagctgcacgcgcgctacg 582
              ||||||||||||||||||||
Sbjct: 823989 cgagctgcacgcgcgctacg 823970
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>gb|BT007348.1| Homo sapiens ring finger protein 7 mRNA, complete cds
          Length = 342

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>gb|AC124303.5| Homo sapiens chromosome 15, clone RP11-145P16, complete sequence
          Length = 160535

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   cccaggtccggcccacagcc 185
             ||||||||||||||||||||
Sbjct: 48315 cccaggtccggcccacagcc 48334
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 174     cggcccacagccgcgccatggcga 197
               |||||||||||||||||| |||||
Sbjct: 2387414 cggcccacagccgcgccagggcga 2387391
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>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6, complete
              sequence
          Length = 209866

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 496    ctctggaattcctggccatgttct 519
              |||||||||||||||| |||||||
Sbjct: 116544 ctctggaattcctggctatgttct 116521
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>gb|AC100774.2| Homo sapiens chromosome , clone RP13-487P22, complete sequence
          Length = 183426

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  cccaggtccggcccacagcc 185
            ||||||||||||||||||||
Sbjct: 7250 cccaggtccggcccacagcc 7231
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>emb|CR590381.1| full-length cDNA clone CS0DI037YP13 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 779

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 34  ctccgtcttccacgtcggcc 15
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     gcacctacagcttgctggac 228
               ||||||||||||||||||||
Sbjct: 1727059 gcacctacagcttgctggac 1727040
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>gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 imprinted HBII-85 and HBII-52
              small nucleolar RNA genes, complete sequence
          Length = 228017

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    cccaggtccggcccacagcc 185
              ||||||||||||||||||||
Sbjct: 123223 cccaggtccggcccacagcc 123204
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>gb|AF312226.1|AF312226 Homo sapiens SAG splice variant mRNA, complete cds
          Length = 674

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>gb|AF092878.1|AF092878 Homo sapiens zinc RING finger protein SAG mRNA, complete cds
          Length = 754

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>gb|AY889176.1| Synthetic construct Homo sapiens clone FLH023657.01X ring finger
           protein 7 (RNF7) mRNA, complete cds
          Length = 342

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>emb|AJ323208.1|HSA323208 Homo sapiens genomic sequence surrounding NotI site, clone NB1-073R
          Length = 439

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 346 ctccgtcttccacgtcggcc 365
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>gb|AF164679.1|AF164679 Homo sapiens ring finger protein CKBBP1 mRNA, complete cds
          Length = 836

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 75  ctccgtcttccacgtcggcc 56
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>gb|AF142060.1|AF142060 Homo sapiens RING finger protein (ROC2) mRNA, complete cds
          Length = 342

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 ctccgtcttccacgtcggcc 552
           ||||||||||||||||||||
Sbjct: 22  ctccgtcttccacgtcggcc 3
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>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete
             sequences
          Length = 174548

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   ggagagctgcccccaggccc 490
             ||||||||||||||||||||
Sbjct: 84762 ggagagctgcccccaggccc 84781
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     gcacctacagcttgctggac 228
               ||||||||||||||||||||
Sbjct: 1256656 gcacctacagcttgctggac 1256675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,414,514
Number of Sequences: 3902068
Number of extensions: 3414514
Number of successful extensions: 66940
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66720
Number of HSP's gapped (non-prelim): 220
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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