ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ML423_ARATH (Q93VR4) MLP-like protein 423 32 1.8
2L18A_LUPLU (P52778) Protein LlR18A (LlPR10.1A) 30 4.0
3MPAC1_CARBE (P38949) Major pollen allergen Car b 1 isoforms 1A a... 30 4.0
4ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens... 29 9.0

>ML423_ARATH (Q93VR4) MLP-like protein 423|
          Length = 155

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 376 AGDDLRPGRLREVSVISGLP-ASTSTERLDLLDDARRAFGFTITGGE 513
           AGD   PG +R ++   G P    S ER++ +D   ++  ++I GGE
Sbjct: 46  AGDGNAPGSIRLITYGEGSPLVKISAERIEAVDLENKSMSYSIIGGE 92



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>L18A_LUPLU (P52778) Protein LlR18A (LlPR10.1A)|
          Length = 156

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 394 PGRLREVSVISGLPASTSTERLDLLDDARRAFGFTITGGEHRLRNYRSVTTVSELSP 564
           PG ++++  I     S    +LD +D+A   + ++I GGE    +   ++  S++ P
Sbjct: 50  PGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILP 106



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>MPAC1_CARBE (P38949) Major pollen allergen Car b 1 isoforms 1A and 1B (Car B I)|
          Length = 159

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 394 PGRLREVSVISGLPASTSTERLDLLDDARRAFGFTITGGE 513
           PG ++ ++   G+P     ER+D +D+A   + +T+  G+
Sbjct: 50  PGTIKNITFAEGIPFKFVKERVDEVDNANFKYNYTVIEGD 89



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>ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens 3 protein)|
           (Zona occludens 3 protein) (Tight junction protein 3)
          Length = 905

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 463 LLDDARRAFGFTITGGEHRLRNYRSVTTVSELSPAAPAE 579
           L  D RR FG  ++GG  R         VS++ P +PAE
Sbjct: 14  LYKDPRRGFGIAVSGGHDRA---SGSVVVSDVVPGSPAE 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,808,970
Number of Sequences: 219361
Number of extensions: 605225
Number of successful extensions: 2322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2322
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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