Clone Information

BLAST Search Result

Clone Name	bart39d08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulator...	292	6e-79
2	PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit...	190	2e-48
3	PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit...	190	2e-48
4	RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8	187	3e-47
5	RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8	187	3e-47
6	PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit...	186	4e-47
7	RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8	166	4e-41
8	RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8	166	5e-41
9	RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8	165	1e-40
10	IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 s...	90	6e-18
11	IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 s...	88	2e-17
12	IF35_ARATH (O04202) Eukaryotic translation initiation factor 3 s...	84	2e-16
13	CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalos...	64	3e-10
14	CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signal...	63	7e-10
15	CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signal...	62	1e-09
16	CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalos...	62	2e-09
17	CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalos...	62	2e-09
18	IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 s...	51	2e-06
19	IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 s...	51	2e-06
20	IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 s...	51	2e-06
21	IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 s...	50	5e-06
22	CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalos...	45	1e-04
23	CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalos...	45	2e-04
24	RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Pr...	41	0.003
25	PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit...	40	0.007
26	CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-...	39	0.015
27	YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III	39	0.015
28	RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11	39	0.015
29	CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	37	0.056
30	PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit...	35	0.13
31	PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit...	35	0.16
32	PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit...	35	0.16
33	PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit...	35	0.16
34	CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	35	0.21
35	CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-...	35	0.21
36	RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MP...	35	0.21
37	RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11	35	0.21
38	CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-...	35	0.21
39	CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.28
40	CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.28
41	CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-...	34	0.37
42	CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	32	1.4
43	EFNA1_RAT (P97553) Ephrin-A1 precursor (EPH-related receptor tyr...	32	1.4
44	EFNA1_MOUSE (P52793) Ephrin-A1 precursor (EPH-related receptor t...	32	1.4
45	CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4...	31	2.4
46	CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	31	2.4
47	CCA2_THEAC (Q9V302) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21...	31	2.4
48	CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	31	2.4
49	HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein...	31	3.1
50	RUVB_NITMU (Q2Y5G5) Holliday junction ATP-dependent DNA helicase...	30	4.0
51	HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote...	30	4.0
52	CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-...	30	6.9
53	EFNA1_HUMAN (P20827) Ephrin-A1 precursor (EPH-related receptor t...	30	6.9
54	CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4...	30	6.9
55	MUTS1_HALMA (Q5UZG9) DNA mismatch repair protein mutS 1	29	9.0
56	AAA_STAS1 (Q49UX4) N-acetylmuramoyl-L-alanine amidase aaa precur...	29	9.0
57	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	29	9.0
58	G3P_PSEAE (P27726) Glyceraldehyde-3-phosphate dehydrogenase (EC ...	29	9.0

>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7|
           (26S proteasome regulatory subunit rpn8) (MOV34 protein)
          Length = 308

 Score =  292 bits (747), Expect = 6e-79
 Identities = 141/158 (89%), Positives = 149/158 (94%)
 Frame = +2

Query: 122 MDVVKAAQLSGRTLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNS 301
           MDV+K  Q+S RT+EKVVVHPLVLLSIVDHYNRVA+D+ KRVVGVLLG+SSRGVVDVTNS
Sbjct: 1   MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNS 60

Query: 302 YAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFT 481
           YAVPFEEDDKDP IWFLDHNYHESMF MFKRINAKEHVVGWYSTGPKL+ENDLDVHALF 
Sbjct: 61  YAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFN 120

Query: 482 NYVPNPVLVIIDVQTQELGIPTKAYYAVEEVKENATQK 595
            YVPNPVLVIIDVQ +ELGIPTKAYYAVEEVKENATQK
Sbjct: 121 GYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQK 158

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>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40) (Mov34
           protein homolog)
          Length = 324

 Score =  190 bits (483), Expect = 2e-48
 Identities = 86/144 (59%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 337
           ++KVVVHPLVLLS+VDH+NR+ +   +KRVVGVLLG+  + V+DV+NS+AVPF+EDDKD 
Sbjct: 6   VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDD 65

Query: 338 RIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 517
            +WFLDH+Y E+M+ MFK++NA+E +VGWY TGPKL +ND+ ++ L   Y PN VLVIID
Sbjct: 66  SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125

Query: 518 VQTQELGIPTKAYYAVEEVKENAT 589
           V+ ++LG+PT+AY +VEEV ++ T
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDDGT 149

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>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40) (Mov34
           protein)
          Length = 321

 Score =  190 bits (483), Expect = 2e-48
 Identities = 86/144 (59%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 337
           ++KVVVHPLVLLS+VDH+NR+ +   +KRVVGVLLG+  + V+DV+NS+AVPF+EDDKD 
Sbjct: 6   VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDD 65

Query: 338 RIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 517
            +WFLDH+Y E+M+ MFK++NA+E +VGWY TGPKL +ND+ ++ L   Y PN VLVIID
Sbjct: 66  SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIID 125

Query: 518 VQTQELGIPTKAYYAVEEVKENAT 589
           V+ ++LG+PT+AY +VEEV ++ T
Sbjct: 126 VKPKDLGLPTEAYISVEEVHDDGT 149

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>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8|
          Length = 324

 Score =  187 bits (474), Expect = 3e-47
 Identities = 81/143 (56%), Positives = 118/143 (82%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           ++V+VHPLVLLS VD YNR A+ T++RVVG+LLG ++  VV+V NSYA+PFEED+K+  +
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 523
           WFLDHN+ ESM  MFK+INA E +VGWY TGP+L+ +DL+++ L   Y+PNPVLVIIDV+
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVK 134

Query: 524 TQELGIPTKAYYAVEEVKENATQ 592
            + +G+PT AY+A++E++++ ++
Sbjct: 135 PKSVGLPTNAYFAIDEIEDDGSK 157

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>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8|
          Length = 352

 Score =  187 bits (474), Expect = 3e-47
 Identities = 87/142 (61%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVA--RDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           V V PLVLLS+VDHYNR    +   KRVVGVLLG +    V V+NS+AVPFEEDDKDP +
Sbjct: 16  VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFEEDDKDPSV 75

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 523
           WFLDHNY ESM  MFK++NA+E ++GWY +GPKL+ +DLD++ LF  Y PNP+LVI+DVQ
Sbjct: 76  WFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQ 135

Query: 524 TQELGIPTKAYYAVEEVKENAT 589
            +E G+PT AY+AV+E+K++ T
Sbjct: 136 PKETGVPTDAYFAVDEIKDDGT 157

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>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S|
           proteasome regulatory subunit rpn8) (26S proteasome
           regulatory subunit S12) (Proteasome subunit p40)
           (Proteasome subunit p39B) (Protein Mov34)
          Length = 337

 Score =  186 bits (472), Expect = 4e-47
 Identities = 86/146 (58%), Positives = 119/146 (81%), Gaps = 2/146 (1%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVAR-DTRKRVVGVLLGT-SSRGVVDVTNSYAVPFEEDDK 331
           ++ KV+VHPLVLLS+VDH+NR+ +   +KRVVGVLLG   S+GV+DV+NS+AVPF+EDDK
Sbjct: 6   SVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDK 65

Query: 332 DPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVI 511
           D  +WFLDH+Y E+M+ MFK++NA+E VVGWY TGPKL +ND+ ++ L   Y PN VLVI
Sbjct: 66  DKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVI 125

Query: 512 IDVQTQELGIPTKAYYAVEEVKENAT 589
           ID + ++LG+PT+AY +VEEV ++ +
Sbjct: 126 IDAKPKDLGLPTEAYISVEEVHDDGS 151

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>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8|
          Length = 326

 Score =  166 bits (421), Expect = 4e-41
 Identities = 78/143 (54%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           E+V V PLVLLS++DHY R+     KR VGVLLG +S   + VTNS+A+PFEED+K+P +
Sbjct: 6   EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDV 65

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 520
           WFLDHNY E+M  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   N +L+I+DV
Sbjct: 66  WFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDV 125

Query: 521 QTQELGIPTKAYYAVEEVKENAT 589
           + Q +G+PT AY A+EEVK++ +
Sbjct: 126 KQQGVGLPTDAYMAIEEVKDDGS 148

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>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8|
          Length = 329

 Score =  166 bits (420), Expect = 5e-41
 Identities = 77/143 (53%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           + V + PLVLLS++DHY R      KR VGV+LG S    + VTNS+A+PFEED+K+  +
Sbjct: 6   DNVTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDV 65

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 520
           WFLDHNY ESM  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   NP+L+I+DV
Sbjct: 66  WFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVDV 125

Query: 521 QTQELGIPTKAYYAVEEVKENAT 589
           + Q++G+PT AY AVE+VK++ T
Sbjct: 126 KQQDVGLPTDAYMAVEQVKDDGT 148

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>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8|
          Length = 337

 Score =  165 bits (417), Expect = 1e-40
 Identities = 76/143 (53%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           EKV + PLVLLS +DHY R      KR VGV+LG ++   + VTNS+A+PFEED+K+  +
Sbjct: 5   EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDV 64

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVP-NPVLVIIDV 520
           WFLDHNY E+M  M K+INAKE ++GWY +GPKL+ +DL ++ LF  Y   NP+L+I+DV
Sbjct: 65  WFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDV 124

Query: 521 QTQELGIPTKAYYAVEEVKENAT 589
           + Q +G+PT AY A+E+VK++ T
Sbjct: 125 KQQGVGLPTDAYVAIEQVKDDGT 147

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>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 357

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 43/129 (33%), Positives = 76/129 (58%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 349
           V +HP++L SIVD Y R   +   RV+G LLGT  +  V+VTN ++VP  E + +  +  
Sbjct: 92  VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV-- 148

Query: 350 LDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQTQ 529
            D  + ++M+ + K+++  E ++GWY+TG  + E+ + +H  ++   PNP+ + +D   Q
Sbjct: 149 -DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQ 207

Query: 530 ELGIPTKAY 556
              +  KAY
Sbjct: 208 NGRMSIKAY 216

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>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 43/129 (33%), Positives = 76/129 (58%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 349
           V +HP++L SIVD Y R   +   RV+G LLGT  +  V+VTN ++VP  E + +  +  
Sbjct: 96  VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV-- 152

Query: 350 LDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQTQ 529
            D  + ++M+ + K+++  E ++GWY+TG  + E+ + +H  ++   PNP+ + +D   Q
Sbjct: 153 -DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQ 211

Query: 530 ELGIPTKAY 556
              +  KAY
Sbjct: 212 HGRMSIKAY 220

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>IF35_ARATH (O04202) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
          Length = 293

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKDPRIWFL 352
           +HPLV+ ++ D + R   D+ +RV+G LLG+    G VD+ NSYAVP  E      +   
Sbjct: 30  IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV--- 85

Query: 353 DHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIID 517
           D +YH +M +   ++N+KE +VGWYSTG  +      +H  +   VPNP+ + +D
Sbjct: 86  DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVD 140

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>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 318

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           V +HPLV+L+I DH+ R+     +  +V+G L+G      ++V NS+ +  + +D+   I
Sbjct: 32  VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSQINDEKITI 91

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 523
              +  Y+ +    FK++      +GWY+TG     +D+ VH      + +P+ + ++  
Sbjct: 92  ---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPM 148

Query: 524 TQELGIPTKAYYAVEEV 574
           T+   +P   Y +V ++
Sbjct: 149 TKHTDLPVSVYESVIDI 165

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>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit|
           6b) (AtCSN6b)
          Length = 317

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRK----------------------RVVGVLLGTSSRGVVD 289
           +HPLV+L+I DH+ RV                            RV G ++G      V+
Sbjct: 13  LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVE 72

Query: 290 VTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVH 469
           + NS+ + F     DP +  LD ++ E    ++K++    +V+GWYSTG    E+D+ +H
Sbjct: 73  IFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIH 127

Query: 470 ALFTNYVPNPVLVIID 517
               +   +PV V+++
Sbjct: 128 KALMDINESPVYVLLN 143

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>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit|
           6a) (AtCSN6a)
          Length = 317

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRK----------------------RVVGVLLGTSSRGVVD 289
           +HPLV+++I DHY RV                            RV G ++G      V+
Sbjct: 13  LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVE 72

Query: 290 VTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVH 469
           + NS+ + +     DP    LD ++ E    ++K++    +++GWYSTG   +E+D+ +H
Sbjct: 73  IFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIH 127

Query: 470 ALFTNYVPNPVLVIID 517
               +   +PV V+++
Sbjct: 128 KALMDINESPVYVLLN 143

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>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
           (Vpr-interacting protein) (hVIP) (MOV34 homolog)
          Length = 327

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           V +HPLV+L+I DH+ R+     +  +V+G L+G      ++V NS+ +     ++    
Sbjct: 41  VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI-- 98

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 523
             +D  Y+ +    FK++  +   +GWY+TG     +D+ VH      + +P+ + ++  
Sbjct: 99  -IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 157

Query: 524 TQELGIPTKAYYAVEEV 574
           T+   +P   + +V ++
Sbjct: 158 TKHTDLPVSVFESVIDI 174

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>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
          Length = 324

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRK--RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           V +HPLV+L+I DH+ R+     +  +V+G L+G      ++V NS+ +     ++    
Sbjct: 38  VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI-- 95

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQ 523
             +D  Y+ +    FK++  +   +GWY+TG     +D+ VH      + +P+ + ++  
Sbjct: 96  -IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 154

Query: 524 TQELGIPTKAYYAVEEV 574
           T+   +P   + +V ++
Sbjct: 155 TKHTDLPVSVFESVIDI 171

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>IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h)
          Length = 352

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 337
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 338 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 508
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 509 IID-VQTQELGIPTKAYYAVEEVKENATQK 595
           I D ++T +  +  KAY    ++ E   +K
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180

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>IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h)
          Length = 352

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 337
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 338 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 508
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 509 IID-VQTQELGIPTKAYYAVEEVKENATQK 595
           I D ++T +  +  KAY    ++ E   +K
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180

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>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma)
          Length = 352

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVP-FEEDDKDP 337
           +++V +  LV+L I+ HY    + T   V GVLLG      +++TN +  P   EDD D 
Sbjct: 36  VKQVQIDGLVVLKIIKHYQEEGQGTEV-VQGVLLGLVVEDRLEITNCFPFPQHTEDDAD- 93

Query: 338 RIWFLDHNYHESMFSMFKRINAKEHVVGWYST---GPKLKENDLDVHALFTNYVPNPVLV 508
              F +  Y   M    + +N     VGWY +   G  +    LD    + + +   V++
Sbjct: 94  ---FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVL 150

Query: 509 IID-VQTQELGIPTKAYYAVEEVKENATQK 595
           I D ++T +  +  KAY    ++ E   +K
Sbjct: 151 IYDPIKTAQGSLSLKAYRLTPKLMEVCKEK 180

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>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
          Length = 337

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
 Frame = +2

Query: 161 LEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 340
           L  V +  L +L I+ H    +      V G LLG     V++VTN +  P  +DD++  
Sbjct: 22  LRVVQIEGLAVLKIIKHCKEFSPTL---VTGQLLGLDVGSVLEVTNCFPFPVRDDDEE-- 76

Query: 341 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYVPN---PVLVI 511
           I     NY   M    + +N   + VGWY +        +++   F NY  N    V +I
Sbjct: 77  IEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCII 136

Query: 512 IDVQTQELGI 541
            D    +LG+
Sbjct: 137 YDPSKADLGV 146

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>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (Dch6)
          Length = 341

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/147 (19%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
 Frame = +2

Query: 125 DVVKAAQLSGRTLEKVVVHPLVLLSIVDHYNR--VARDTRKRVVGVLLGTSSRGVVDVTN 298
           +++ AA  SG     + +HPLV+++I +H+ R        ++V G L+G      +++ N
Sbjct: 41  NIMAAAGTSGSVT--ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMN 98

Query: 299 SYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALF 478
           S+ +  +    +  I   + +Y+      +K++ +    +GWY+TG     +D+ +    
Sbjct: 99  SFELKTDVIGDETVI---NKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQI 155

Query: 479 TNYVPNPVLVIIDVQTQELG-IPTKAY 556
                 P+++ ++  ++ +  +P K +
Sbjct: 156 AAINECPIMLQLNPLSRSVDHLPLKLF 182

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>CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 426

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
 Frame = +2

Query: 149 SGRTLEKVVVHPLVLLSIVDHYNRV---ARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFE 319
           SG    KV++HPLV++ + +HY+R       T K+V G +LG  +   V+  NS+ +  E
Sbjct: 7   SGSCSSKVLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKME 66

Query: 320 -EDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTG--PKLKENDLDVHALFTNYV 490
            E+  +P  +  +H    +    +  +  +  V+G Y  G    L   +  + +  TN V
Sbjct: 67  TEEMAEPVTFSTEHLLQRA--DQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAV 124

Query: 491 PN 496
            N
Sbjct: 125 RN 126

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>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)|
          Length = 308

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKDPR 340
           E V +  L LL ++ H       T   V+G++LG       V V + +A+P  +      
Sbjct: 28  ECVYISSLALLKMLRHGRH---GTPMEVMGLMLGEFVDDFTVRVVDVFAMP--QSGTGVS 82

Query: 341 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLV 508
           +  +D  + ++M  M K+    E VVGWY + P     L   D++    F    P  V V
Sbjct: 83  VEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAV 142

Query: 509 IID 517
           ++D
Sbjct: 143 VVD 145

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>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 308

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 334
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 26  TSEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDEYTVRVVDVFAMP--QSGTG 80

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +DH +  +M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 81  VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 140

Query: 503 LVIID 517
            V++D
Sbjct: 141 AVVVD 145

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>CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (Dch5) (JAB1 homolog)
          Length = 327

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 349
           + +  L LL +V H           V+G++LG      + V +++A+P E  +       
Sbjct: 52  IKISALALLKMVMH---ARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQA 108

Query: 350 LDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
             + Y  +     K +   EH VGWY + P     L   D+    L   Y    V +++D
Sbjct: 109 QAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVD 168

Query: 518 -VQTQELG 538
            V+T   G
Sbjct: 169 PVRTVSAG 176

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>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III|
          Length = 319

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E V +  L LL ++ H           V+G++LG       ++VT+ +A+P  +    
Sbjct: 25  TSETVNISSLALLKMLRH---ARSGIPLEVMGLMLGDFVDDYTINVTDVFAMP--QSGTS 79

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  Y      + K +   E+VVGWY + P     L   D++    F    P  V
Sbjct: 80  VTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAV 139

Query: 503 LVIID 517
            V++D
Sbjct: 140 AVVVD 144

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>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11|
          Length = 311

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 334
           T E V +  L LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 28  TKETVYISSLALLKMLKHSRA---GVPMEVMGLMLGDFVDEYTVNVVDVFAMP--QSGTG 82

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    + VVGWY + P     L   D+D    F       V
Sbjct: 83  VSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAV 142

Query: 503 LVIID 517
            V++D
Sbjct: 143 AVVVD 147

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>CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 373

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +2

Query: 245 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 424
           V+G+L+G +S  ++ V + Y++P +  +         + Y       F  +  ++ +VGW
Sbjct: 88  VMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQYLDAF--VTKEDKIVGW 145

Query: 425 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           Y + P     L   D+   +L  NY    + +++D
Sbjct: 146 YHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVD 180

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>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S proteasome
           regulatory complex subunit p37B) (Yippee-interacting
           protein 5)
          Length = 308

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 25  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVQVIDVFAMP--QTGTG 79

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 80  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 139

Query: 503 LVIID 517
            V++D
Sbjct: 140 AVVVD 144

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>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 312

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E V +  L LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 29  TSETVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVNVIDVFAMP--QSGTG 83

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 84  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAV 143

Query: 503 LVIID 517
            V++D
Sbjct: 144 AVVVD 148

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>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (MAD1)
          Length = 310

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 27  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QSGTG 81

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 82  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 141

Query: 503 LVIID 517
            V++D
Sbjct: 142 AVVVD 146

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>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S
           proteasome-associated PAD1 homolog 1)
          Length = 310

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E+V +  L LL ++ H           V+G++LG       V V + +A+P  +    
Sbjct: 27  TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QSGTG 81

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    E VVGWY + P     L   D++    F       V
Sbjct: 82  VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAV 141

Query: 503 LVIID 517
            V++D
Sbjct: 142 AVVVD 146

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>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 469

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 245 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 424
           V+G++ G   +  + V + Y +P E  +         + Y        K++   E++VGW
Sbjct: 85  VMGMMTGKIIKNSIIVMDVYPLPVEGTETRVNAQAEGYEYMVQYLENLKQVGRDENIVGW 144

Query: 425 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID-VQTQELG 538
           Y + P     L   D+   +L  N+    + ++ID ++T++ G
Sbjct: 145 YHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQG 187

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>CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 332

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 355
           V  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 55  VSALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 111

Query: 356 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 112 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 169

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>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)|
          Length = 306

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFEEDDKD 334
           T E V +  + LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 23  TKETVYISSIALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVNVVDVFAMP--QSGTG 77

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    + VVGWY + P     L   D++    F       V
Sbjct: 78  VSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAV 137

Query: 503 LVIID 517
            V++D
Sbjct: 138 AVVVD 142

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>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11|
          Length = 306

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
 Frame = +2

Query: 158 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTS-SRGVVDVTNSYAVPFEEDDKD 334
           T E V +  + LL ++ H           V+G++LG       V+V + +A+P  +    
Sbjct: 23  TKETVYISSIALLKMLKHGRA---GVPMEVMGLMLGEFVDEYTVNVVDVFAMP--QSGTG 77

Query: 335 PRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPV 502
             +  +D  +   M  M K+    + VVGWY + P     L   D++    F       V
Sbjct: 78  VSVEAVDDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAV 137

Query: 503 LVIID 517
            V++D
Sbjct: 138 AVVVD 142

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>CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 355
           V  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 57  VSALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 113

Query: 356 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 114 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 171

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>CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1) (Kip1 C-terminus-interacting
           protein 2)
          Length = 333

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 355
           +  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 56  ISALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 112

Query: 356 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 113 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 170

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>CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1)
          Length = 333

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 176 VHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLD 355
           +  L LL +V H           V+G++LG      + + +S+A+P E  +         
Sbjct: 56  ISALALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAA 112

Query: 356 HNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           + Y  +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 113 YEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 170

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>CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
 Frame = +2

Query: 185 LVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNY 364
           L LL +V H           V+G++LG      + + +S+A+P E  +         + Y
Sbjct: 58  LALLKMVMH---ARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEY 114

Query: 365 HESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
             +     K++   E+ +GWY + P     L   D+    L   +    V V+ID
Sbjct: 115 MAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVID 169

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>CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 299

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
 Frame = +2

Query: 170 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWF 349
           V +  + LL ++ H   V++     V+G + G      + + +S+A+P E  +       
Sbjct: 35  VKISAVALLKMLRH---VSQGMPLEVMGYVQGKVEGASLIILDSFALPVEGTETRVNAHE 91

Query: 350 LDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
               Y     ++ K +   E+V+GWY + P     L   D++       Y    V V++D
Sbjct: 92  EAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLD 151

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>EFNA1_RAT (P97553) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61)
          Length = 205

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 401 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 490
           A  H+V W S+ PK +E D  VH    +Y+
Sbjct: 18  ADRHIVFWNSSNPKFREEDYTVHVQLNDYL 47

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>EFNA1_MOUSE (P52793) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61)
          Length = 205

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 401 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 490
           A  H+V W S+ PK +E D  VH    +Y+
Sbjct: 18  ADRHIVFWNSSNPKFREEDYTVHVQLNDYL 47

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>CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4.-.-)|
           (Signalosome subunit 5b) (Jun activation domain-binding
           homolog 1)
          Length = 357

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRK-RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 340
           ++V +  L LL +V H    AR      ++G++ G +    + V +++A+P E  +    
Sbjct: 57  KRVHISALALLKMVVH----ARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVN 112

Query: 341 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLV 508
                + Y        K     E+VVGWY + P     L   D+    L   Y    + V
Sbjct: 113 AQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAV 172

Query: 509 IID 517
           +ID
Sbjct: 173 VID 175

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>CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 340

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +2

Query: 245 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 424
           V+G++ G +      VT+++ +P E  +         + Y      + +    +E+VVGW
Sbjct: 74  VMGLMQGYTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENVVGW 133

Query: 425 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           Y + P     L   D+D  A+   +    + V+ID
Sbjct: 134 YHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVID 168

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>CCA2_THEAC (Q9V302) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
           (Fragment)
          Length = 222

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 311 PFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDVHALFTNYV 490
           P +E++   RI   D     +     +R+ A+  +VG Y+ G  L++ DLD+   F    
Sbjct: 13  PTQEEENRLRIISDDIIRKINSICRSRRLRAEAVIVGSYAKGTNLRDGDLDIFIAFDRDY 72

Query: 491 PNPVL 505
           P  ++
Sbjct: 73  PEEII 77

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>CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 336

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +2

Query: 245 VVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHVVGW 424
           V+G++ G      + +T++Y +P E  +         + Y      + +  N  E+V+GW
Sbjct: 66  VMGMMQGYIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREENRLENVIGW 125

Query: 425 YSTGPK----LKENDLDVHALFTNYVPNPVLVIID 517
           Y + P     L   D+   +L   +    V V+ID
Sbjct: 126 YHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVID 160

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>HPAB2_PSESM (Q8RSY1) Effector protein hopAB2 (Avirulence protein avrPtoB)|
           [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)]
          Length = 553

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 336 GSLSSSSNGTA*ELVTSTTPREEVPRSTPTTRFRVSRATRL 214
           GS +SSSN    +   S TP    P   PT R R+SR+T L
Sbjct: 31  GSGASSSNSPQVQPRPSNTPPSNAPAPPPTGRERLSRSTAL 71

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>RUVB_NITMU (Q2Y5G5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 347

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 395 INAKEHVVGWYSTGPKLKENDLDVHALFTNYVPNPVLVIIDVQTQELGIPTKAYYAVEE 571
           I AKE  VG   T   + E   D+ AL TN  PN VL I ++      +    Y A+E+
Sbjct: 75  IVAKEMGVGLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALED 133

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>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 333 SLSSSSNGTA*ELVTSTTPREEVPRSTPTT 244
           S SSSS+ T  +   STTP   VP +TP T
Sbjct: 213 SSSSSSSSTTPKTSASTTPESSVPATTPNT 242

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>CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (JAB1 homolog)
          Length = 368

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRI 343
           +++ +  + LL +  H     R     ++G+L G        + + +A+P E  +     
Sbjct: 54  KQIKISAIALLKMTMH---AKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNA 110

Query: 344 WFLDHNYHESMFSMFKRINAKEHVVGWYSTGPK----LKENDLDVHALFTNYVPNPVLVI 511
               + Y      M      KE VVGWY + P     L   D+    L   +    V ++
Sbjct: 111 QAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIV 170

Query: 512 ID 517
           ID
Sbjct: 171 ID 172

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>EFNA1_HUMAN (P20827) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase|
           ligand 1) (LERK-1) (Immediate early response protein
           B61) (Tumor necrosis factor, alpha-induced protein 4)
          Length = 205

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 401 AKEHVVGWYSTGPKLKENDLDVHALFTNYV 490
           A  H V W S+ PK +  D  +H    +YV
Sbjct: 18  ADRHTVFWNSSNPKFRNEDYTIHVQLNDYV 47

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>CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4.-.-)|
           (Signalosome subunit 5a) (Jun activation domain-binding
           homolog 2)
          Length = 358

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +2

Query: 164 EKVVVHPLVLLSIVDHYNRVARDTRK-RVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPR 340
           ++V +  L LL +V H    AR      ++G++ G +    + V +++A+P E  +    
Sbjct: 57  KRVKISALALLKMVVH----ARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVN 112

Query: 341 IWFLDHNYHESMFSMFKRINAKEHVVGWYSTGP 439
                + Y        K     E+VVGWY + P
Sbjct: 113 AQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHP 145

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>MUTS1_HALMA (Q5UZG9) DNA mismatch repair protein mutS 1|
          Length = 921

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +2

Query: 302 YAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAK--EHVVGWYSTGPKLKEND----LD 463
           Y  P E D+K+  +  L+   H+  +  F+R+ A+  EH       G  L E D    L 
Sbjct: 508 YTTP-ELDEKERDVLRLEERRHDMEYEHFQRLRARVAEHATLLQDVGRTLAELDAFASLA 566

Query: 464 VHALFTNYVPNPVLVIIDVQTQELGIPTKAYYAVEEVKE 580
           VHA+  ++    V     V   EL I    +  VE+  E
Sbjct: 567 VHAVENDWARPAV-----VDGNELSIEAGRHPVVEQTTE 600

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>AAA_STAS1 (Q49UX4) N-acetylmuramoyl-L-alanine amidase aaa precursor (EC|
           3.5.1.28)
          Length = 327

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 236 RKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINAKEHV 415
           RK+++  ++GTS+   V  TN+ A    +      +W + + Y+ S+  +    N   +V
Sbjct: 2   RKKIIATVIGTSALAAVTWTNADAATTYKVKSGDSLWSIANKYNMSVAKLKSLNNLTSNV 61

Query: 416 V 418
           +
Sbjct: 62  I 62

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 164 EKVVVHPLVL--LSIVDHYNRVARDTRKRVVGVLLGTSSRGVVDVTNSYAVPFEEDDKDP 337
           E +VV P V+  +  VDH      D  ++   V+ G +  G+     +Y V  E +D++ 
Sbjct: 522 EDLVVRPPVVTVMGHVDHGKTRLLDAIRKT-NVIAGEAG-GITQHIGAYQVATEVNDEER 579

Query: 338 RIWFLDHNYHESMFSMFKR 394
           +I F+D   HE+  +M  R
Sbjct: 580 KITFIDTPGHEAFTAMRAR 598

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>G3P_PSEAE (P27726) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)|
           (GAPDH)
          Length = 334

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 143 QLSGRTLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRG-VVDVTNSYAVPFE 319
           +L+G+     V  P++ +S+VD   +VARDT    V  LL  +S G  V   N+  +   
Sbjct: 224 ELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGSPVLGYNTQPLVSV 283

Query: 320 EDDKDPRIWFLDHNY 364
           + + DPR    D N+
Sbjct: 284 DFNHDPRSSIFDANH 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,731,389
Number of Sequences: 219361
Number of extensions: 1057868
Number of successful extensions: 3242
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result