ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39d05 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Frame = +3 Query: 210 VLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDS 389 +L+ AG F+TF+ L STGV NQ NN+ G+T+F P D+AF + + L++L+ Sbjct: 50 LLSVAGPFHTFLDYLLSTGVIETFQNQANNT-EEGITIFVPKDDAFKAQKNPPLSNLTKD 108 Query: 390 QKNALIQYHVLSTAIPMSQFDTV--SNPLRTQAGSSSPGQYPLNVTAEGQQVNI 545 Q L+ +H L +S+F + S P+ T AG GQY L T V I Sbjct: 109 QLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAG----GQYSLKFTDVSGTVRI 158
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 61.6 bits (148), Expect = 2e-09 Identities = 39/117 (33%), Positives = 63/117 (53%) Frame = +3 Query: 207 GVLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSD 386 G+L KAG TF LL S+GV ++ + G+TVFAP+D AF + L +L+ Sbjct: 193 GLLEKAG-CKTFANLLVSSGVIKTFESTVEK----GLTVFAPSDEAFKARGVPDLTNLTQ 247 Query: 387 SQKNALIQYHVLSTAIPMSQFDTVSNPLRTQAGSSSPGQYPLNVTAEGQQVNITTGV 557 ++ +L++YH L+ P T + + T A ++ G+Y L + G +V + TGV Sbjct: 248 AEVVSLLEYHALAEYKPKGSLKTNKDAISTLA-TNGAGKYDLTTSTSGDEVILHTGV 303
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 60.5 bits (145), Expect = 3e-09 Identities = 39/117 (33%), Positives = 62/117 (52%) Frame = +3 Query: 207 GVLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSD 386 G+L KAG TF LL S+GV ++ + G+TVFAP+D AF + L L+ Sbjct: 192 GLLEKAG-CKTFANLLVSSGVLKTYESAVEK----GLTVFAPSDEAFKAEGVPDLTKLTQ 246 Query: 387 SQKNALIQYHVLSTAIPMSQFDTVSNPLRTQAGSSSPGQYPLNVTAEGQQVNITTGV 557 ++ +L++YH L+ P T N + T A ++ G++ L + G +V + TGV Sbjct: 247 AEVVSLLEYHALAEYKPKGSLKTNKNNISTLA-TNGAGKFDLTTSTSGDEVILHTGV 302
>POSTN_MOUSE (Q62009) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 838 Score = 37.7 bits (86), Expect = 0.024 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%) Frame = +3 Query: 270 AAQIDNQLNNSFGSG--MTVFAPTDNAFTSLASGTLNSLSDSQ--KNALIQYHVLSTAIP 437 AA I + L S G T+FAPT+ AF L G L + + AL++YH+L+T + Sbjct: 254 AAAITSDLLESLGRDGHFTLFAPTNEAFEKLPRGVLERIMGDKVASEALMKYHILNT-LQ 312 Query: 438 MSQFDTVSNPLRTQAGSSSPGQYPLNVTAEGQQVNI 545 S+ T T G++ + + EG ++I Sbjct: 313 CSEAITGGAVFETMEGNT------IEIGCEGDSISI 342 Score = 29.6 bits (65), Expect = 6.4 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = +3 Query: 228 QFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDSQKNAL- 404 +F+ F+ LL+ AA + + L T+FAPT++AF + S L KNAL Sbjct: 510 RFSIFLSLLE----AADLKDLLTQP--GDWTLFAPTNDAFKGMTSEE-RELLIGDKNALQ 562 Query: 405 --IQYHVLSTAIPMSQFDT-VSNPLRTQAGS 488 I YH+ F+ V+N L+T GS Sbjct: 563 NIILYHLTPGVYIGKGFEPGVTNILKTTQGS 593
>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor| Length = 424 Score = 36.2 bits (82), Expect = 0.069 Identities = 23/86 (26%), Positives = 41/86 (47%) Frame = +3 Query: 300 SFGSGMTVFAPTDNAFTSLASGTLNSLSDSQKNALIQYHVLSTAIPMSQFDTVSNPLRTQ 479 S GMTVF P D+A N L+ +K A + + + T M+ + + P+ T Sbjct: 216 SLEGGMTVFCPGDDAMKGFLPKYKN-LTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTL 274 Query: 480 AGSSSPGQYPLNVTAEGQQVNITTGV 557 A + ++ L V +G++V + T + Sbjct: 275 A-TDGANKFELTVQNDGEKVTLKTRI 299
>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)| Length = 220 Score = 35.8 bits (81), Expect = 0.090 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = +3 Query: 285 NQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDSQK--NALIQYHVLSTAIPMSQFDTV 458 N ++ G TVFAPT+ AF L + T++ L K ++++ YHV++ S+ D Sbjct: 112 NLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVIAGQASPSRIDGT 171 Query: 459 SNPLR 473 L+ Sbjct: 172 HQTLQ 176
>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)| Length = 220 Score = 35.8 bits (81), Expect = 0.090 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = +3 Query: 285 NQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDSQK--NALIQYHVLSTAIPMSQFDTV 458 N ++ G TVFAPT+ AF L + T++ L K ++++ YHV++ S+ D Sbjct: 112 NLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVIAGQASPSRIDGT 171 Query: 459 SNPLR 473 L+ Sbjct: 172 HQTLQ 176
>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor| Length = 180 Score = 35.0 bits (79), Expect = 0.15 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%) Frame = +3 Query: 231 FNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNS-LSDSQKNALI 407 F+T + +K+ + + + TVFAPT++AF +L +GT+ S L K+ L+ Sbjct: 58 FSTLVAAVKAADLVEALSAE------GPFTVFAPTNDAFAALPAGTVESLLLPENKDKLV 111 Query: 408 Q---YHVLSTAIPMSQFDTVSNPLRTQAGSS-----SPGQYPLN-VTAEGQQVNITTGVV 560 + YHV+ I +Q S + + AG + G+ +N T V+ + GV+ Sbjct: 112 KILTYHVVPGKITAAQVQ--SGEVASLAGEALTFKVKDGKVKVNKATVISADVDASNGVI 169 Query: 561 N 563 + Sbjct: 170 H 170
>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like| laminin-type EGF-like and link domain-containing scavenger receptor 1) (FAS1 EGF-like and X-link domain-containing adhesion molecule 2) (Hyaluronan receptor for endocytosis) [ Length = 2551 Score = 34.7 bits (78), Expect = 0.20 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 21/132 (15%) Frame = +3 Query: 228 QFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDSQKN--- 398 +++ F LL+ T + +D + G T+F P + A ++ GTL+ L + + Sbjct: 527 RYSKFRSLLEETNLGHALDE---DGVGGPYTIFVPNNEALNNMKDGTLDYLLSPEGSRKL 583 Query: 399 -ALIQYHVL-----------------STAIPMSQFDTVSNPLRTQAGSSSPGQYPLNVTA 524 L++YH++ S A + QF+T N Q ++ + +TA Sbjct: 584 LELVRYHIVPFTQLEVATLISTPHIRSMANQLIQFNTTDN---GQILANDVAMEEIEITA 640 Query: 525 EGQQVNITTGVV 560 + ++ TGV+ Sbjct: 641 KNGRIYTLTGVL 652
>MP70_MYCTU (P0A668) Immunogenic protein MPT70 precursor| Length = 193 Score = 34.7 bits (78), Expect = 0.20 Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%) Frame = +3 Query: 258 STGVAAQIDNQLN--NSFGSGM-TVFAPTDNAFTSLASGTLNSL--SDSQKNALIQYHVL 422 + ++ Q++ Q+N ++ SG TVFAPT+ AF+ L + T++ L + S +++ YHV+ Sbjct: 74 TAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133 Query: 423 S 425 + Sbjct: 134 A 134
>MP70_MYCBO (P0A669) Immunogenic protein MPB70 precursor| Length = 193 Score = 34.7 bits (78), Expect = 0.20 Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%) Frame = +3 Query: 258 STGVAAQIDNQLN--NSFGSGM-TVFAPTDNAFTSLASGTLNSL--SDSQKNALIQYHVL 422 + ++ Q++ Q+N ++ SG TVFAPT+ AF+ L + T++ L + S +++ YHV+ Sbjct: 74 TAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133 Query: 423 S 425 + Sbjct: 134 A 134
>Y1735_SYNY3 (P73392) Hypothetical protein sll1735| Length = 133 Score = 34.3 bits (77), Expect = 0.26 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +3 Query: 318 TVFAPTDNAFTSLASGTLNSLSDS--QKNALIQYHVLS 425 TVFAPTD AF L GT+ +L + Q ++ YHV++ Sbjct: 37 TVFAPTDTAFAKLPPGTITTLVQNIPQLARILTYHVVA 74
>POSTN_HUMAN (Q15063) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 836 Score = 34.3 bits (77), Expect = 0.26 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = +3 Query: 270 AAQIDNQLNNSFGSG--MTVFAPTDNAFTSLASGTLNSLSDSQ--KNALIQYHVLST 428 AA I + + + G T+FAPT+ AF L G L + + AL++YH+L+T Sbjct: 252 AAAITSDILEALGRDGHFTLFAPTNEAFEKLPRGVLERIMGDKVASEALMKYHILNT 308 Score = 29.6 bits (65), Expect = 6.4 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 228 QFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDSQKNAL- 404 +F+TF+ LL+ AA + L T+F PT++AF + S L KNAL Sbjct: 508 RFSTFLSLLE----AADLKELLTQP--GDWTLFVPTNDAFKGMTSEEKEILI-RDKNALQ 560 Query: 405 --IQYHVLSTAIPMSQFDT-VSNPLRTQAGS 488 I YH+ F+ V+N L+T GS Sbjct: 561 NIILYHLTPGVFIGKGFEPGVTNILKTTQGS 591
>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog| Length = 133 Score = 33.9 bits (76), Expect = 0.34 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 231 FNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSL--SDSQKNAL 404 F+T + +++ G+ + + TVFAP D+AF L GT+ +L + Q + Sbjct: 14 FSTLVAAVQAAGLVETLAGE------GDFTVFAPNDDAFAKLPPGTIQTLVQNPPQLARI 67 Query: 405 IQYHV 419 + YHV Sbjct: 68 LTYHV 72
>BGH3_RABIT (Q95215) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 33.5 bits (75), Expect = 0.45 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = +3 Query: 318 TVFAPTDNAFTSLASGTLNSLSDSQKNA--LIQYHV 419 TVFAPT+ AF +L G LN L + K +++YHV Sbjct: 538 TVFAPTNEAFQALPPGELNKLLGNAKELADILKYHV 573
>BGH3_PIG (O11780) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 33.5 bits (75), Expect = 0.45 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +3 Query: 210 VLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDS 389 VL +F+ + ++S G+ ++ + TVFAPT+ AF +L G N L + Sbjct: 508 VLKGDNRFSMLVAAIQSAGLTETLNRE------GVYTVFAPTNEAFQALPLGERNKLLGN 561 Query: 390 QKNA--LIQYHV 419 K +++YHV Sbjct: 562 AKELANILKYHV 573
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 32.3 bits (72), Expect = 0.99 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Frame = +3 Query: 210 VLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSG-MTVFAPTDNAFTSLASGTLNSLSD 386 +LA F+ F +L++ G+ + +D G G TVFAP++ A SL G L L Sbjct: 512 ILASTEAFSRFETILENCGLPSILD-------GPGPFTVFAPSNEAVDSLRDGRLIYLFT 564 Query: 387 ---SQKNALIQYHV 419 S+ L++YH+ Sbjct: 565 AGLSKLQELVRYHI 578
>TECT2_RAT (Q3B7D3) Tectonic-2 precursor| Length = 700 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 535 CWPSAV-TLSGYWPGELLPACVRSGLLTVSNCDMGMAVERTW 413 CWP + L+ Y+ GE P CV GL+ +S + + + W Sbjct: 645 CWPQLLYPLTQYYQGEPRPQCVAKGLMLLSLLMLAILLRHPW 686
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +3 Query: 210 VLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSG-MTVFAPTDNAFTSLASGTLNSLSD 386 +LA F F +L++ G+ + +D G G TVFAP++ A SL G L L Sbjct: 513 ILASTEVFTRFETILENCGLPSILD-------GPGPFTVFAPSNEAVDSLRDGRLIYLFT 565 Query: 387 ---SQKNALIQYHV 419 S+ L++YH+ Sbjct: 566 AGLSKLQELVRYHI 579
>COAT3_MIMIV (Q5UQN7) Probable capsid protein 3| Length = 2156 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = +3 Query: 276 QIDNQLNNSFGSGMTVFAPTDNAFTSLA-SGTLNSLSDSQKNALIQY-----HVLSTAIP 437 +IDN N F + + +FT L N L DS +N ++ S +P Sbjct: 357 EIDNNYNLLFNTQANIMFDNIQSFTDLLFEHYRNLLFDSTENLFFNKSPTPSNIYSYILP 416 Query: 438 MSQFDTVSNPLRTQAGSSSPGQYPLNV 518 +DT SN L + + P + LN+ Sbjct: 417 TKAYDTKSNNLSDEKINDGPNVFNLNI 443
>HS12A_MOUSE (Q8K0U4) Heat shock 70 kDa protein 12A| Length = 675 Score = 30.8 bits (68), Expect = 2.9 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = +3 Query: 330 PTDNAFTSLASGTLNSLSDSQKNALIQYHVLSTAIPMSQFDTVSNPLRTQAGSSSPGQYP 509 P + A TS S SL D+ L H+L+ A P+S+ T + G++S G Y Sbjct: 13 PRETAPTSTYSSPARSLGDTGITPLSPSHILNDADPVSEQQTFLVVVAIDFGTTSSG-YA 71 Query: 510 LNVTAEGQQVNI 545 + T E + +++ Sbjct: 72 YSFTKEPECIHV 83
>BGH3_MOUSE (P82198) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) Length = 683 Score = 30.4 bits (67), Expect = 3.8 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +3 Query: 210 VLAKAGQFNTFIRLLKSTGVAAQIDNQLNNSFGSGMTVFAPTDNAFTSLASGTLNSLSDS 389 VL +F+ + ++S G+ ++ + TVFAPT+ AF ++ LN L + Sbjct: 508 VLKGDNRFSMLVAAIQSAGLMEILNRE------GVYTVFAPTNEAFQAMPPEELNKLLAN 561 Query: 390 QKNA--LIQYHV 419 K +++YH+ Sbjct: 562 AKELTNILKYHI 573
>DSBD_VIBPA (Q87KW0) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 613 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +3 Query: 276 QIDNQLNNSFGSGMTVFAPTDNAF 347 Q +N NNSFGS F P D AF Sbjct: 27 QFNNSQNNSFGSSNDSFVPVDQAF 50
>DGAT1_CERAE (Q9GMF1) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)| (Diglyceride acyltransferase) Length = 491 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/47 (34%), Positives = 19/47 (40%) Frame = +2 Query: 185 GRHDEHHGGAGQGRAVQHVHPAAQVDGRGGADRQPAQQQLRERHDGV 325 G HGG G A + V AA G A PA ++ DGV Sbjct: 16 GSRPSSHGGGGPAAAEEEVRDAAAGPDMGAAGDAPAPAPSKDADDGV 62
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +3 Query: 270 AAQIDNQLNNSFGSGMTVFAPTDN-AFTSLASGTLNSLSDSQKNALIQYHVLSTAIPMSQ 446 ++++ + +S S T+F+ + + + +S +S + +S S S ++ Y LST+ S Sbjct: 217 SSELTSSSYSSSSSSSTLFSYSSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSI 276 Query: 447 FDTVSNPLRTQAGSSSP 497 + + S P + + SS+P Sbjct: 277 YSSSSYPSFSSSSSSNP 293
>KUP_ZYMMO (Q5NN77) Probable potassium transport system protein kup| Length = 652 Score = 29.3 bits (64), Expect = 8.4 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Frame = -2 Query: 469 SGLLTVSNCDMGMAVERTWYW-------ISAFFWLSDSELSVPEASEV 347 +G + +++C MG+ V R W+W + +FF L D + +++ Sbjct: 397 TGTMFITSCMMGVLVHRVWHWKAWQSIPLVSFFLLIDGAFFLSNVTKI 444 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,469,222 Number of Sequences: 219361 Number of extensions: 759212 Number of successful extensions: 3713 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3608 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3711 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
