ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39d03 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 63.2 bits (152), Expect = 5e-10 Identities = 38/101 (37%), Positives = 48/101 (47%) Frame = +2 Query: 239 GTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPNEVGDPWRA 418 G P P A P P PA+F FGD D GNNN +E ++ Sbjct: 173 GPPPKPAPAPTPAPSPKPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKI-----KS 227 Query: 419 NHSYYGIDFPKSEPTGRFSNGFNMADFIAKAMGFEMSPPAY 541 N+ YG+DF TGRFSNG +D++AK MG + PAY Sbjct: 228 NYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVKEIVPAY 268
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 62.4 bits (150), Expect = 8e-10 Identities = 31/71 (43%), Positives = 42/71 (59%) Frame = +2 Query: 329 PALFVFGDGSLDVGNNNYIEPNEVGDPWRANHSYYGIDFPKSEPTGRFSNGFNMADFIAK 508 PA+F FGD D GNNN ++ + N+ YG+DFP TGRFSNG +D+I+K Sbjct: 124 PAVFFFGDSIFDTGNNNNLDTK-----LKCNYRPYGMDFPMGVATGRFSNGRVASDYISK 178 Query: 509 AMGFEMSPPAY 541 +G + PAY Sbjct: 179 YLGVKEIVPAY 189
>LCE2B_HUMAN (O14633) Late cornified envelope protein 2B (Late envelope protein| 10) (Small proline-rich-like epidermal differentiation complex protein 1B) (Skin-specific protein Xp5) Length = 110 Score = 34.7 bits (78), Expect = 0.19 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 203 CTDTKKKRPGCTGTCPDRCPQSCIALCPS 289 C K P CT CP +CP C+ CP+ Sbjct: 10 CQPPPKCPPKCTPKCPPKCPPKCLPQCPA 38
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 33.5 bits (75), Expect = 0.41 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +2 Query: 212 TKKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQV 316 T K P CT CP +CP C P C CP V Sbjct: 17 TPKCPPKCTPKCPPKCPPKC---PPQCSAPCPPPV 48 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +2 Query: 218 KKRPGCTGTCPDRCPQSCIALCPSCQTYC 304 K P C CP +CP C A CP + C Sbjct: 23 KCTPKCPPKCPPKCPPQCSAPCPPPVSSC 51
>DUT_THETN (Q8RA46) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 148 Score = 33.1 bits (74), Expect = 0.54 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = -2 Query: 288 EGQSAMQLWGHLSGQVPVHPGRFFLVSVHVNLLLPPSPSA 169 EG + M L+ ++ G+V ++PG L+ + + LPP+ A Sbjct: 24 EGAAGMDLYANVKGEVTINPGEVELIPTGIQIELPPNYEA 63
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 32.7 bits (73), Expect = 0.71 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = +2 Query: 329 PALFVFGDGSLDVGNNNYIEPNEVGDPWRANHSYYGIDFPKSEPTGRFSNGFNMADFIAK 508 PA+F FGD + D G + + G P + S++G P GR+ +G + DFIA+ Sbjct: 29 PAIFNFGDSNSDTGGLSAAF-GQAGPPHGS--SFFG------SPAGRYCDGRLVIDFIAE 79 Query: 509 AMG 517 ++G Sbjct: 80 SLG 82
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 32.7 bits (73), Expect = 0.71 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = +2 Query: 329 PALFVFGDGSLDVGNNNYIEPNEVGDPWRANHSYYGIDFPKSEPTGRFSNGFNMADFIAK 508 PA+F FGD + D G + + N Y F +S TGR+S+G + DFIA+ Sbjct: 33 PAIFNFGDSNSDTGG-------KAAAFYPLNPPYGETFFHRS--TGRYSDGRLIIDFIAE 83 Query: 509 AMGFEMSPPAYKSLNKS 559 + P SL + Sbjct: 84 SFNLPYLSPYLSSLGSN 100
>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein| 12) (Small proline-rich-like epidermal differentiation complex protein 1A) Length = 110 Score = 32.7 bits (73), Expect = 0.71 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +2 Query: 203 CTDTKKKRPGCTGTCPDRCPQSCIALCPS 289 C K P CT CP +CP C CP+ Sbjct: 10 CQPPPKCPPKCTPKCPPKCPPKCPPQCPA 38
>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein| 11) Length = 110 Score = 32.7 bits (73), Expect = 0.71 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +2 Query: 203 CTDTKKKRPGCTGTCPDRCPQSCIALCPS 289 C K P CT CP +CP C CP+ Sbjct: 10 CQPPPKCPPKCTPKCPPKCPPKCPPQCPA 38
>SYM_ARCFU (O28819) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 658 Score = 32.3 bits (72), Expect = 0.92 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 272 IALCPSCQTYCPDQ-VQPVRPALFVFGDG-SLDVGNNNYIEPNEVGDP 409 +A CP CQ + PD+ V+ + P G D G ++EP E+ +P Sbjct: 121 LAYCPKCQRFLPDRYVEGICPYCGALARGDECDQGCGRHLEPGEIKEP 168
>LCE1F_HUMAN (Q5T754) Late cornified envelope protein 1F (Late envelope protein| 6) Length = 118 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/43 (34%), Positives = 17/43 (39%) Frame = +2 Query: 227 PGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDG 355 P CT CP +CP P C CP + PV V G Sbjct: 14 PKCTPKCPPKCP------TPKCPPKCPPKCPPVSSCCSVSSGG 50
>LCE1E_HUMAN (Q5T753) Late cornified envelope protein 1E (Late envelope protein| 5) Length = 118 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/43 (34%), Positives = 17/43 (39%) Frame = +2 Query: 227 PGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDG 355 P CT CP +CP P C CP + PV V G Sbjct: 14 PKCTPKCPPKCP------TPKCPPKCPPKCPPVSSCCSVSSGG 50
>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein| 3) Length = 118 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/43 (34%), Positives = 17/43 (39%) Frame = +2 Query: 227 PGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDG 355 P CT CP +CP P C CP + PV V G Sbjct: 14 PKCTPKCPPKCP------TPKCPPKCPPKCPPVSSCCSVSSGG 50
>LCE1A_HUMAN (Q5T7P2) Late cornified envelope protein 1A (Late envelope protein| 1) Length = 110 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/43 (34%), Positives = 17/43 (39%) Frame = +2 Query: 227 PGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDG 355 P CT CP +CP P C CP + PV V G Sbjct: 14 PKCTPKCPPKCP------TPKCPPKCPPKCPPVSSCCSVSSGG 50
>CP003_HUMAN (O95177) Protein C16orf3| Length = 125 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Frame = +2 Query: 230 GCTGTCPDRCPQSCIALCP-SCQTYCP 307 GC CP CP +C CP +C CP Sbjct: 49 GCPAACPVGCPIACPVSCPVACPVGCP 75
>PPCK_CHLLI (Q08262) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 618 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = +2 Query: 383 IEPNEVGDPWRANHSYYGIDFPKSEPTGRFSNGFNMADFIAK 508 +EP + PW N + Y + FP+ +S+G+N + K Sbjct: 185 LEPGQADVPWPCNDTKYIVHFPEEHAIVSYSSGYNGNTLLGK 226
>SPR2D_MOUSE (O70555) Small proline-rich protein 2D| Length = 85 Score = 31.2 bits (69), Expect = 2.1 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +2 Query: 203 CTDTKKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQP 322 C K P CP+ CP+ C PSCQ CP P Sbjct: 36 CPPPKCPEPCPPPKCPEPCPEPCPP--PSCQQKCPPAQPP 73
>GRA4_TOXGO (Q27002) Dense granule protein 4 precursor (Protein GRA 4) (Antigen| H11) Length = 345 Score = 30.4 bits (67), Expect = 3.5 Identities = 27/94 (28%), Positives = 36/94 (38%) Frame = +2 Query: 182 GGNSRFTCTDTKKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSL 361 GG T T + PG G PQ + + Y P V P P++FVF S+ Sbjct: 111 GGYYMPTGVYTAQVVPGTPGHPVQAIPQQPLRTQATATYYHPAAVPPPGPSVFVFTPSSV 170 Query: 362 DVGNNNYIEPNEVGDPWRANHSYYGIDFPKSEPT 463 G + P G R S YG +P + T Sbjct: 171 QPGAE--VTPGYSGLQLR-QQSQYGYSYPGTTST 201
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Frame = -1 Query: 166 GHRRLP-GHRDRQHAQEHRPQCA----HRGSWPP 80 GHR LP GHR R+H Q+ RP + H+ PP Sbjct: 287 GHRPLPPGHRTREHQQKKRPPPSGTQIHQQKGPP 320
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 25.8 bits (55), Expect(2) = 5.4 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 3/23 (13%) Frame = +2 Query: 245 CPDRCPQSCIALC---PSCQTYC 304 CP CP +C C P C T C Sbjct: 61 CPATCPAACACPCPMKPCCPTKC 83 Score = 22.7 bits (47), Expect(2) = 5.4 Identities = 6/12 (50%), Positives = 10/12 (83%) Frame = +3 Query: 309 TKCSQCGRRCSC 344 TKC+ C ++C+C Sbjct: 81 TKCTCCPKKCTC 92
>VA16_VACCT (Q77TI4) Protein A16| Length = 377 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +2 Query: 215 KKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPN 394 + KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 189 RAKRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH---- 238 Query: 395 EVGDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 239 ------KGNRNCWCANYPKSNSGDKY 258
>VA16_VACCC (P20993) Protein A16| Length = 377 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +2 Query: 215 KKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPN 394 + KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 189 RAKRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH---- 238 Query: 395 EVGDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 239 ------KGNRNCWCANYPKSNSGDKY 258
>VA16_VACCA (O93122) Protein A16| Length = 377 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +2 Query: 215 KKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPN 394 + KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 190 RAKRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH---- 239 Query: 395 EVGDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 240 ------KGNRNCWCANYPKSNSGDKY 259
>VA16_RABPU (Q6RZG6) Protein A16| Length = 377 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +2 Query: 215 KKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPN 394 + KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 189 RAKRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH---- 238 Query: 395 EVGDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 239 ------KGNRNCWCANYPKSNSGDKY 258
>XANP_XANS2 (Q60106) Xanthomonalisin precursor (EC 3.4.21.101) (Xanthomonas| aspartic proteinase) (Xanthomonapepsin) (Carboxyl proteinase) (XCP) Length = 827 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 324 TGCTWSGQYVWQEGQSAM 271 +G TWSG+ VW EG SA+ Sbjct: 460 SGTTWSGETVWNEGLSAI 477
>VA16_VACCV (P16710) Protein A16| Length = 376 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +2 Query: 215 KKKRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPN 394 + KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 189 RAKRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH---- 238 Query: 395 EVGDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 239 ------KGNRNCWCANYPKSNSGDKY 258
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 29.3 bits (64), Expect = 7.8 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +2 Query: 245 CPDRCPQSCIALCPSCQTYCPDQ 313 C +C + CI CP CQ C ++ Sbjct: 1471 CSHKCQEPCIGECPPCQRTCQNR 1493
>VA16_VARV (P33841) Protein A16| Length = 376 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/84 (25%), Positives = 36/84 (42%) Frame = +2 Query: 221 KRPGCTGTCPDRCPQSCIALCPSCQTYCPDQVQPVRPALFVFGDGSLDVGNNNYIEPNEV 400 KR T D C + A YC + ++ +RP F FGD +L V N++ Sbjct: 191 KRKPAMSTYSDICSKHMDA------RYCSEFIRIIRPDYFTFGDTALYVFCNDH------ 238 Query: 401 GDPWRANHSYYGIDFPKSEPTGRF 472 + N + + ++PKS ++ Sbjct: 239 ----KGNRNCWCANYPKSNSGDKY 258
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)| (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 29.3 bits (64), Expect = 7.8 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = -2 Query: 300 YVWQEGQSAMQLWGHLSGQVPV--------HPGRFFLVSVHVNLLLPPSPSAAATGVCPD 145 ++ Q SA GHL VP H G L S V LP + A+TG P Sbjct: 830 HLLQASSSAQSTPGHLFPNVPAQEASKSASHKGSRRLASSRVERTLPQASLLASTGPRPK 889 Query: 144 TETVS 130 +TVS Sbjct: 890 PKTVS 894
>SPR2I_MOUSE (O70560) Small proline-rich protein 2I| Length = 76 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = +2 Query: 227 PGCTGTCPD-RCPQSCIALC--PSCQTYCPDQVQPVRP 331 P C CP +CP+ C C PS Q CP VQP P Sbjct: 30 PQCPEPCPPPKCPEPCPESCPPPSYQQKCP-PVQPPPP 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,717,925 Number of Sequences: 219361 Number of extensions: 1606876 Number of successful extensions: 5822 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5749 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
