ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
2emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 54 5e-04
3emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 54 5e-04
4ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
5ref|XM_521064.1| PREDICTED: Pan troglodytes similar to bA119E20.... 44 0.45
6emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chr... 44 0.45
7emb|AL591854.18| Mouse DNA sequence from clone RP23-105M23 on ch... 44 0.45
8dbj|AK135267.1| Mus musculus 12 days embryo male wolffian duct i... 42 1.8
9dbj|AK030934.1| Mus musculus adult male thymus cDNA, RIKEN full-... 42 1.8
10gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, comple... 42 1.8
11ref|XM_469925.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.1
12gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
13gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 40 7.1
14gb|AC147228.3| Mus musculus BAC clone RP23-159I8 from chromosome... 40 7.1
15gb|AC167234.4| Mus musculus 10 BAC RP23-158E3 (Roswell Park Canc... 40 7.1
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.1
17gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 40 7.1
18gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome... 40 7.1
19gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, comple... 40 7.1
20gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 40 7.1
21emb|X91997.1|GGLIVBRN3 G.gallus brn-3 gene (tissue type, liver) 40 7.1
22emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on ch... 40 7.1
23emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 i... 40 7.1
24gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chrom... 40 7.1
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
27gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Can... 40 7.1
28gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Can... 40 7.1
29gb|AC009312.4| Homo sapiens BAC clone RP11-425F6 from 2, complet... 40 7.1
30gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinosta... 40 7.1
31gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, comple... 40 7.1
32gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 40 7.1
33dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
34dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal ... 40 7.1
35gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c... 40 7.1
36gb|U55214.1|TPU55214 Treponema pallidum RuvB' gene, partial cds,... 40 7.1
37gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription re... 40 7.1
38gb|AC126037.4| Mus musculus BAC clone RP24-223I19 from 14, compl... 40 7.1
39emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 7.1 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 159      cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
                |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 24741571 cttggccatttcttaccttccaagcaccaccaatcttgtccga 24741613



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 449      ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 508
                |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 24741902 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 24741961

                     
Query: 509      atcct 513
                 ||||
Sbjct: 24741962 gtcct 24741966



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 101      agcatcctctgacctgccaaac 122
                ||||||||||||||||||||||
Sbjct: 24741528 agcatcctctgacctgccaaac 24741549
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 159    cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
              |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 131094 cttggccatttcttaccttccaagcaccaccaatcttgtccga 131136



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 449    ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 508
              |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 131425 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 131484

                   
Query: 509    atcct 513
               ||||
Sbjct: 131485 gtcct 131489



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    agcatcctctgacctgccaaac 122
              ||||||||||||||||||||||
Sbjct: 131051 agcatcctctgacctgccaaac 131072
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
            complete sequence
          Length = 170765

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 159  cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
            |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 3287 cttggccatttcttaccttccaagcaccaccaatcttgtccga 3329



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 449  ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 508
            |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 3618 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 3677

                 
Query: 509  atcct 513
             ||||
Sbjct: 3678 gtcct 3682



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 101  agcatcctctgacctgccaaac 122
            ||||||||||||||||||||||
Sbjct: 3244 agcatcctctgacctgccaaac 3265
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>ref|XM_473024.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 449 ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 508
           |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 148 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 207

                         
Query: 509 atcctcaggtacaa 522
            ||||  |||||||
Sbjct: 208 gtcctgcggtacaa 221
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>ref|XM_521064.1| PREDICTED: Pan troglodytes similar to bA119E20.1 (KIAA1202 protein)
           (LOC465636), mRNA
          Length = 4572

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 15  ggactctggagggagggagagg 36
           ||||||||||||||||||||||
Sbjct: 726 ggactctggagggagggagagg 705
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>emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chromosome X Contains the
             5' end of gene KIAA1202 and a CpG island, complete
             sequence
          Length = 173510

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    ggactctggagggagggagagg 36
             ||||||||||||||||||||||
Sbjct: 83339 ggactctggagggagggagagg 83360
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>emb|AL591854.18| Mouse DNA sequence from clone RP23-105M23 on chromosome 2, complete
              sequence
          Length = 187181

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     gactctggagggagggagagga 37
              ||||||||||||||||||||||
Sbjct: 107788 gactctggagggagggagagga 107809
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>dbj|AK135267.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720450A19 product:unclassifiable, full insert
            sequence
          Length = 2562

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 22   ggagggagggagaggatatat 42
            |||||||||||||||||||||
Sbjct: 1573 ggagggagggagaggatatat 1593
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>dbj|AK030934.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830463J03 product:unclassifiable, full
            insert sequence
          Length = 5206

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 22   ggagggagggagaggatatat 42
            |||||||||||||||||||||
Sbjct: 4885 ggagggagggagaggatatat 4905
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>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence
          Length = 220046

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ggagggagggagaggatatat 42
             |||||||||||||||||||||
Sbjct: 90412 ggagggagggagaggatatat 90432
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>ref|XM_469925.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 ccgacgccttccactgcatc 484
           ||||||||||||||||||||
Sbjct: 658 ccgacgccttccactgcatc 639
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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   ccgacgccttccactgcatc 484
             ||||||||||||||||||||
Sbjct: 51505 ccgacgccttccactgcatc 51486
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>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 96050 cagcaagcatcctctgacct 96069
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>gb|AC147228.3| Mus musculus BAC clone RP23-159I8 from chromosome 5, complete sequence
          Length = 186527

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aggatatatgtactccatac 53
             ||||||||||||||||||||
Sbjct: 59615 aggatatatgtactccatac 59634
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>gb|AC167234.4| Mus musculus 10 BAC RP23-158E3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184159

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ccaagaaagacacacaacac 246
              ||||||||||||||||||||
Sbjct: 163794 ccaagaaagacacacaacac 163813
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 465      ccgacgccttccactgcatc 484
                ||||||||||||||||||||
Sbjct: 32524061 ccgacgccttccactgcatc 32524042
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>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 64276 cagcaagcatcctctgacct 64257
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>gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome 5, complete sequence
          Length = 153715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aggatatatgtactccatac 53
             ||||||||||||||||||||
Sbjct: 12475 aggatatatgtactccatac 12456
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>gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, complete sequence
          Length = 180922

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    aaacccaagaaagacacaca 242
              ||||||||||||||||||||
Sbjct: 148120 aaacccaagaaagacacaca 148139
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 32718 cagcaagcatcctctgacct 32699
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>emb|X91997.1|GGLIVBRN3 G.gallus brn-3 gene (tissue type, liver)
          Length = 2175

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 ccaaacccaagaaagacaca 240
           ||||||||||||||||||||
Sbjct: 924 ccaaacccaagaaagacaca 905
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>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the
             3' end of a variant of the gene for a novel protein
             similar to human sperm antigen HCMOGT-1 (B230396K10Rik),
             the Adora2b gene for adenosine A2b receptor, the gene for
             a novel protein (2410012H22Rik), a somatic cytochrome c
             (Cycs) pseudogene, a novel gene, a novel pseudogene, the
             gene for a novel protein (2810460C24Rik), the 3' end of
             the Ncor1 gene for nuclear receptor co-repressor 1 and two
             CpG islands, complete sequence
          Length = 214834

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   agacacacaacacaacatag 253
             ||||||||||||||||||||
Sbjct: 97430 agacacacaacacaacatag 97411
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>emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 in linkage group 1,
             complete sequence
          Length = 83811

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   agaaagacacacaacacaac 249
             ||||||||||||||||||||
Sbjct: 63503 agaaagacacacaacacaac 63484
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>gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chromosome unknown, complete
              sequence
          Length = 207989

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tggagggagggagaggatat 40
              ||||||||||||||||||||
Sbjct: 154892 tggagggagggagaggatat 154911
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 465      ccgacgccttccactgcatc 484
                ||||||||||||||||||||
Sbjct: 20629465 ccgacgccttccactgcatc 20629446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 465      ccgacgccttccactgcatc 484
                ||||||||||||||||||||
Sbjct: 32614571 ccgacgccttccactgcatc 32614552
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>gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 146007

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ccaagaaagacacacaacac 246
             ||||||||||||||||||||
Sbjct: 47348 ccaagaaagacacacaacac 47367
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>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161127

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ggggcagcaagcatcctctg 111
             ||||||||||||||||||||
Sbjct: 55377 ggggcagcaagcatcctctg 55396
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>gb|AC009312.4| Homo sapiens BAC clone RP11-425F6 from 2, complete sequence
          Length = 204834

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tggagggagggagaggatat 40
              ||||||||||||||||||||
Sbjct: 146539 tggagggagggagaggatat 146558
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>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin
             biosynthetic locus, complete sequence
          Length = 92294

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cgactccgacgccttccact 479
             ||||||||||||||||||||
Sbjct: 77610 cgactccgacgccttccact 77629
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>gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, complete sequence
          Length = 143441

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ccaaacccaagaaagacaca 240
             ||||||||||||||||||||
Sbjct: 23511 ccaaacccaagaaagacaca 23492
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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   ccgacgccttccactgcatc 484
             ||||||||||||||||||||
Sbjct: 57510 ccgacgccttccactgcatc 57491
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>dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F12, full
           insert sequence
          Length = 2196

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 465 ccgacgccttccactgcatc 484
           ||||||||||||||||||||
Sbjct: 561 ccgacgccttccactgcatc 580
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>dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal phosphoprotein PO,
           partial cds, clone: ORCS13610
          Length = 577

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  agggcagcagcggggcagca 100
           ||||||||||||||||||||
Sbjct: 442 agggcagcagcggggcagca 423
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>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome
          Length = 1138011

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 221    ccaaacccaagaaagacacacaacacaa 248
              |||||||||||||| |||| ||||||||
Sbjct: 186785 ccaaacccaagaaaaacacccaacacaa 186758
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>gb|U55214.1|TPU55214 Treponema pallidum RuvB' gene, partial cds, and TroA, TroB, TroC,
            TroD, TroR, Pgm, Pfs, and Tpp15 genes, complete cds
          Length = 7536

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 221  ccaaacccaagaaagacacacaacacaa 248
            |||||||||||||| |||| ||||||||
Sbjct: 2598 ccaaacccaagaaaaacacccaacacaa 2571
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>gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription regulator gene, complete
           cds
          Length = 1020

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 cctccccgtcgcccgcctcg 452
           ||||||||||||||||||||
Sbjct: 688 cctccccgtcgcccgcctcg 707
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>gb|AC126037.4| Mus musculus BAC clone RP24-223I19 from 14, complete sequence
          Length = 189127

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    cctggactctggagggagggagag 35
             ||||||| ||||||||||||||||
Sbjct: 65756 cctggaccctggagggagggagag 65779
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>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
             sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   aaagacacacaacacaacatagga 255
             |||||||||||||| |||||||||
Sbjct: 67230 aaagacacacaacaaaacatagga 67253


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,613,115
Number of Sequences: 3902068
Number of extensions: 3613115
Number of successful extensions: 94718
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94535
Number of HSP's gapped (non-prelim): 183
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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