ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39b09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB185280.1| Oryza sativa (japonica cultivar-group) OsOBF1 mRNA for bZIP protein, complete cds Length = 1277 Score = 145 bits (73), Expect = 2e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 293 gctggccatggtttgtccaggcatgctgaggcgcaatctctgagctttatgaagatcgct 352 ||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||| Sbjct: 240 gctggccatggtttgccgaggcgagcagagaagaaatctctgagctttatgaagatcgcc 299 Query: 353 actcacctgcgccggtgctgcttcctccagtccttctccgtcgtcttcctctactacttt 412 |||||||||||||| | |||||||||||| |||||||| || ||||||||||||| ||| Sbjct: 300 actcacctgcgccgctcctgcttcctccactccttctcggttgtcttcctctactggttt 359 Query: 413 tatgtgatctcataatt 429 ||||||||||||||||| Sbjct: 360 tatgtgatctcataatt 376
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 145 bits (73), Expect = 2e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 293 gctggccatggtttgtccaggcatgctgaggcgcaatctctgagctttatgaagatcgct 352 ||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||| Sbjct: 23001266 gctggccatggtttgccgaggcgagcagagaagaaatctctgagctttatgaagatcgcc 23001325 Query: 353 actcacctgcgccggtgctgcttcctccagtccttctccgtcgtcttcctctactacttt 412 |||||||||||||| | |||||||||||| |||||||| || ||||||||||||| ||| Sbjct: 23001326 actcacctgcgccgctcctgcttcctccactccttctcggttgtcttcctctactggttt 23001385 Query: 413 tatgtgatctcataatt 429 ||||||||||||||||| Sbjct: 23001386 tatgtgatctcataatt 23001402
>dbj|AK071530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102N09, full insert sequence Length = 943 Score = 145 bits (73), Expect = 2e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 293 gctggccatggtttgtccaggcatgctgaggcgcaatctctgagctttatgaagatcgct 352 ||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||| Sbjct: 259 gctggccatggtttgccgaggcgagcagagaagaaatctctgagctttatgaagatcgcc 318 Query: 353 actcacctgcgccggtgctgcttcctccagtccttctccgtcgtcttcctctactacttt 412 |||||||||||||| | |||||||||||| |||||||| || ||||||||||||| ||| Sbjct: 319 actcacctgcgccgctcctgcttcctccactccttctcggttgtcttcctctactggttt 378 Query: 413 tatgtgatctcataatt 429 ||||||||||||||||| Sbjct: 379 tatgtgatctcataatt 395
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 145 bits (73), Expect = 2e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 293 gctggccatggtttgtccaggcatgctgaggcgcaatctctgagctttatgaagatcgct 352 ||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||| Sbjct: 22929457 gctggccatggtttgccgaggcgagcagagaagaaatctctgagctttatgaagatcgcc 22929516 Query: 353 actcacctgcgccggtgctgcttcctccagtccttctccgtcgtcttcctctactacttt 412 |||||||||||||| | |||||||||||| |||||||| || ||||||||||||| ||| Sbjct: 22929517 actcacctgcgccgctcctgcttcctccactccttctcggttgtcttcctctactggttt 22929576 Query: 413 tatgtgatctcataatt 429 ||||||||||||||||| Sbjct: 22929577 tatgtgatctcataatt 22929593
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 145 bits (73), Expect = 2e-31 Identities = 121/137 (88%) Strand = Plus / Plus Query: 293 gctggccatggtttgtccaggcatgctgaggcgcaatctctgagctttatgaagatcgct 352 ||||||||||||||| | |||| || ||| | ||||||||||||||||||||||||| Sbjct: 110543 gctggccatggtttgccgaggcgagcagagaagaaatctctgagctttatgaagatcgcc 110602 Query: 353 actcacctgcgccggtgctgcttcctccagtccttctccgtcgtcttcctctactacttt 412 |||||||||||||| | |||||||||||| |||||||| || ||||||||||||| ||| Sbjct: 110603 actcacctgcgccgctcctgcttcctccactccttctcggttgtcttcctctactggttt 110662 Query: 413 tatgtgatctcataatt 429 ||||||||||||||||| Sbjct: 110663 tatgtgatctcataatt 110679
>gb|BT018824.1| Zea mays clone EL01N0532F03.d mRNA sequence Length = 1409 Score = 137 bits (69), Expect = 4e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 327 aatctctgagctttatgaagatcgctactcacctgcgccggtgctgcttcctccagtcct 386 ||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| Sbjct: 300 aatctctgagctttatgaagatcgccactcacctgcgccgctcctgcttcctccactcct 359 Query: 387 tctccgtcgtcttcctctactacttttatgtgatctcataa 427 |||| || ||||||||||||| |||||||||||||||||| Sbjct: 360 tctcggttgtcttcctctactggttttatgtgatctcataa 400
>emb|X62745.1|ZMOCSBFA Z.mays OBF1 mRNA for ocs-element binding factor 1 Length = 1457 Score = 137 bits (69), Expect = 4e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 327 aatctctgagctttatgaagatcgctactcacctgcgccggtgctgcttcctccagtcct 386 ||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| Sbjct: 373 aatctctgagctttatgaagatcgccactcacctgcgccgctcctgcttcctccactcct 432 Query: 387 tctccgtcgtcttcctctactacttttatgtgatctcataa 427 |||| || ||||||||||||| |||||||||||||||||| Sbjct: 433 tctcggtagtcttcctctactggttttatgtgatctcataa 473
>gb|AY103652.1| Zea mays PCO086174 mRNA sequence Length = 1583 Score = 137 bits (69), Expect = 4e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 327 aatctctgagctttatgaagatcgctactcacctgcgccggtgctgcttcctccagtcct 386 ||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| Sbjct: 468 aatctctgagctttatgaagatcgccactcacctgcgccgctcctgcttcctccactcct 527 Query: 387 tctccgtcgtcttcctctactacttttatgtgatctcataa 427 |||| || ||||||||||||| |||||||||||||||||| Sbjct: 528 tctcggttgtcttcctctactggttttatgtgatctcataa 568
>gb|AF479057.1| Triticum aestivum ocs-element binding factor 1 mRNA, partial cds Length = 633 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 504 tttcctgcttcaacgagtgataaataagaacggtagcagcag 545 |||||||| ||||| |||||||||||||||| |||||||||| Sbjct: 48 tttcctgcgtcaacaagtgataaataagaaccgtagcagcag 89
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 |||||||||||||||||||||||||||| Sbjct: 20030178 cagtccttctccgtcgtcttcctctact 20030205
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 |||||||||||||||||||||||||||| Sbjct: 133087 cagtccttctccgtcgtcttcctctact 133114
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 |||||||||||||||||||||||||||| Sbjct: 28140 cagtccttctccgtcgtcttcctctact 28167
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 378 tccagtccttctccgtcgtcttcctctact 407 ||||||| |||||||||||||||||||||| Sbjct: 1696697 tccagtctttctccgtcgtcttcctctact 1696668
>emb|AJ617794.1| Secale cereale mRNA for ocs-element binding factor 1 (obf1 gene) Length = 827 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 504 tttcctgcttcaacgagtgataaataagaacggtagcagcag 545 |||||||| ||||| ||| |||||||||||| |||||||||| Sbjct: 22 tttcctgcgtcaacaagtcataaataagaaccgtagcagcag 63
>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030G11 Length = 143943 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 378 tccagtccttctccgtcgtcttcctctact 407 ||||||| |||||||||||||||||||||| Sbjct: 14709 tccagtctttctccgtcgtcttcctctact 14680
>dbj|AK070887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O22, full insert sequence Length = 1506 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 378 tccagtccttctccgtcgtcttcctctact 407 ||||||| |||||||||||||||||||||| Sbjct: 449 tccagtctttctccgtcgtcttcctctact 478
>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete sequence Length = 138602 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 37 ccagagtctccaagctccagctcccact 64 ||||||||||||||||||| |||||||| Sbjct: 136378 ccagagtctccaagctccacctcccact 136351
>ref|NM_127373.2| Arabidopsis thaliana GBF5; DNA binding / transcription factor AT2G18160 (GBF5) mRNA, complete cds Length = 1231 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 285 ttctccgtcgtcttcctctact 306
>gb|AC100740.8| Mus musculus chromosome 1, clone RP24-421N21, complete sequence Length = 146835 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 ccattgctctccagagtctcca 48 |||||||||||||||||||||| Sbjct: 33123 ccattgctctccagagtctcca 33102
>ref|XM_503854.1| Yarrowia lipolytica CLIB122, YALI0E12221g predicted mRNA Length = 1926 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 530 agaacggtagcagcagtagtagccag 555 |||||||||||| ||||||||||||| Sbjct: 905 agaacggtagcaacagtagtagccag 880
>gb|BT000700.1| Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds Length = 1120 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 196 ttctccgtcgtcttcctctact 217
>gb|AC116037.2| Homo sapiens chromosome 3 clone RP11-462M7, complete sequence Length = 147831 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 540 cagcagtagtagccaggtggta 561 |||||||||||||||||||||| Sbjct: 91429 cagcagtagtagccaggtggta 91408
>gb|AC007212.7| Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence Length = 57550 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 29055 ttctccgtcgtcttcctctact 29076
>gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, complete sequence Length = 188458 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 tggctgccattgctctccagag 42 |||||||||||||||||||||| Sbjct: 74 tggctgccattgctctccagag 95
>gb|AY037216.1| Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds Length = 882 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 192 ttctccgtcgtcttcctctact 213
>emb|BX842044.1|CNS09Y87 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1159 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 271 ttctccgtcgtcttcctctact 292
>gb|AF053939.1|AF053939 Arabidopsis thaliana transcription factor GBF5 (GBF5) mRNA, complete cds Length = 1246 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 386 ttctccgtcgtcttcctctact 407 |||||||||||||||||||||| Sbjct: 283 ttctccgtcgtcttcctctact 304
>gb|AC027129.6| Homo sapiens chromosome 3 clone RP11-792N12 map 3p, complete sequence Length = 192031 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 540 cagcagtagtagccaggtggta 561 |||||||||||||||||||||| Sbjct: 94683 cagcagtagtagccaggtggta 94704
>gb|AC135012.2| Homo sapiens chromosome 16 clone RP11-805I24, complete sequence Length = 157630 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 tggctgccattgctctccagag 42 |||||||||||||||||||||| Sbjct: 150050 tggctgccattgctctccagag 150071
>gb|AC166124.4| Mus musculus chromosome 1, clone RP23-105N9, complete sequence Length = 226615 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 ccattgctctccagagtctcca 48 |||||||||||||||||||||| Sbjct: 135379 ccattgctctccagagtctcca 135358
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 530 agaacggtagcagcagtagtagccag 555 |||||||||||| ||||||||||||| Sbjct: 1488163 agaacggtagcaacagtagtagccag 1488138
>ref|XM_632490.1| Dictyostelium discoideum hypothetical protein (DDB0187057), partial mRNA Length = 1374 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 ctccagctcccacttcaccaccatt 75 |||||||||||||| |||||||||| Sbjct: 956 ctccagctcccactccaccaccatt 980
>ref|NM_197878.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0027L23.4), mRNA Length = 653 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcttcctcctccgattgggt 21 ||||||||||||||||||||| Sbjct: 41 ctcttcctcctccgattgggt 21
>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11, complete sequence Length = 145796 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 109810 tccttctccgtcgccttcctctact 109834
>emb|X57325.1|OSLIP19 Rice lip19 mRNA for basic/leucine zipper protein Length = 1324 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 302 tccttctccgtcgccttcctctact 326
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 ggagctgctgttcttgctaggctgg 213 |||||||||||||||||| |||||| Sbjct: 152084 ggagctgctgttcttgctgggctgg 152060
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcttcctcctccgattgggt 21 ||||||||||||||||||||| Sbjct: 71045 ctcttcctcctccgattgggt 71025
>emb|AL113954.1|CNS01B9M Botrytis cinerea strain T4 cDNA library Length = 540 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 tccgtcgtcttcctctactac 409 ||||||||||||||||||||| Sbjct: 158 tccgtcgtcttcctctactac 178
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcttcctcctccgattgggt 21 ||||||||||||||||||||| Sbjct: 22419022 ctcttcctcctccgattgggt 22419002
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 1657650 tccttctccgtcgccttcctctact 1657674
>dbj|AB193552.1| Triticum aestivum WLIP19 mRNA for bZIP transcription factor, complete cds Length = 676 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 7 tccttctccgtcgccttcctctact 31
>dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F02, full insert sequence Length = 1182 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 340 tccttctccgtcgccttcctctact 364
>dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G08, full insert sequence Length = 1344 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 330 tccttctccgtcgccttcctctact 354
>dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D17, full insert sequence Length = 1375 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 341 tccttctccgtcgccttcctctact 365
>dbj|AP001359.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-820L6, complete sequences Length = 221535 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 tctctgagctttatgaagatc 349 ||||||||||||||||||||| Sbjct: 111486 tctctgagctttatgaagatc 111466
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcttcctcctccgattgggt 21 ||||||||||||||||||||| Sbjct: 22431090 ctcttcctcctccgattgggt 22431070
>gb|U20661.1|DDU20661 Dictyostelium discoideum unknown internal repeat protein gene, complete cds, and unknown orf1, orf2 and orf3 genes, partial cds Length = 4284 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 ctccagctcccacttcaccaccatt 75 |||||||||||||| |||||||||| Sbjct: 2699 ctccagctcccactccaccaccatt 2723
>dbj|D26563.1|MZEMLIP15 Maize mRNA for mLIP15 (DNA-binding factor), complete cds Length = 1179 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 311 tccttctccgtcgccttcctctact 335
>dbj|D63956.1| Zea mays gmlip15 gene, complete cds Length = 3794 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 2583 tccttctccgtcgccttcctctact 2607
>dbj|D63955.1| Oryza sativa glip19 gene, complete cds Length = 3139 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 tccttctccgtcgtcttcctctact 407 ||||||||||||| ||||||||||| Sbjct: 1998 tccttctccgtcgccttcctctact 2022
>ref|XM_866288.1| PREDICTED: Bos taurus similar to Cytochrome c oxidase polypeptide VIc-2 (LOC614700), mRNA Length = 444 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aagaatttctttgggttgag 185 |||||||||||||||||||| Sbjct: 322 aagaatttctttgggttgag 341
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 atttcctgcttcaacgagtg 522 |||||||||||||||||||| Sbjct: 3456078 atttcctgcttcaacgagtg 3456059
>gb|AC004927.2| Homo sapiens PAC clone RP5-910I17 from 7, complete sequence Length = 80105 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gagaagaatttctttgggtt 182 |||||||||||||||||||| Sbjct: 78106 gagaagaatttctttgggtt 78125
>emb|AL135839.15| Human DNA sequence from clone RP1-188K17 on chromosome 6q22.22-23.3 Contains the part of the SGK gene for serum/glucocorticoid regulated kinase and a CpG island, complete sequence Length = 113673 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gctaggctgggctaggctag 223 |||||||||||||||||||| Sbjct: 30222 gctaggctgggctaggctag 30203
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgtcgtcttcctctactact 410 |||||||||||||||||||| Sbjct: 110578 cgtcgtcttcctctactact 110559
>gb|AC124231.17| Mus musculus chromosome 18, clone RP23-17N19, complete sequence Length = 219005 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tttatgtgatctcataattg 430 |||||||||||||||||||| Sbjct: 76705 tttatgtgatctcataattg 76724
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 10220104 ctctccagagtctccaagatccag 10220081
>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence Length = 192324 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ctccagctcccacttcacca 70 |||||||||||||||||||| Sbjct: 114959 ctccagctcccacttcacca 114978
>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold Length = 276070 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 134138 ctctccagagtctccaagatccag 134115
>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold Length = 331329 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 197735 ctctccagagtctccaagatccag 197712
>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete sequence Length = 225200 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 213194 ctctccagagtctccaagatccag 213171
>ref|NM_140266.1| Drosophila melanogaster CG5718-RA (CG5718), mRNA Length = 2155 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 tggaggttcttgctggccatggtt 305 ||||||||||||||||| |||||| Sbjct: 1073 tggaggttcttgctggcaatggtt 1096
>gb|AC010698.7| Drosophila melanogaster 3L BAC RP98-15K18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174631 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 tggaggttcttgctggccatggtt 305 ||||||||||||||||| |||||| Sbjct: 80773 tggaggttcttgctggcaatggtt 80796
>gb|AY094732.1| Drosophila melanogaster GH25972 full insert cDNA Length = 2166 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 tggaggttcttgctggccatggtt 305 ||||||||||||||||| |||||| Sbjct: 1073 tggaggttcttgctggcaatggtt 1096
>gb|AC116311.1| Homo sapiens chromosome 5 clone CTD-2212M21, complete sequence Length = 123905 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 tctactacttttatgtgatc 421 |||||||||||||||||||| Sbjct: 31012 tctactacttttatgtgatc 30993
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tcccacttcaccaccattcc 77 |||||||||||||||||||| Sbjct: 1202521 tcccacttcaccaccattcc 1202540
>emb|AL115263.1|CNS01C9Z Botrytis cinerea strain T4 cDNA library Length = 660 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ccggtgctgcttcctccagt 383 |||||||||||||||||||| Sbjct: 21 ccggtgctgcttcctccagt 40
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 ||||||||||| || ||||||||||||| Sbjct: 7817958 cagtccttctctgttgtcttcctctact 7817985
>gb|AC007224.5| Homo sapiens chromosome 16 clone RP11-475D10, complete sequence Length = 185327 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aagaatttctttgggttgag 185 |||||||||||||||||||| Sbjct: 134603 aagaatttctttgggttgag 134584
>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete sequence Length = 196548 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 54610 ctctccagagtctccaagatccag 54587
>gb|AC084481.1|CBRG02P14 Caenorhabditis briggsae cosmid G02P14, complete sequence Length = 43735 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 cttcaacgagtgataaataa 530 |||||||||||||||||||| Sbjct: 42109 cttcaacgagtgataaataa 42128
>gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chromosome y, complete sequence Length = 194913 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 165876 ctctccagagtctccaagatccag 165899
>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete sequence Length = 185225 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 11088 ctctccagagtctccaagatccag 11111
>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete sequence Length = 207364 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 73783 ctctccagagtctccaagatccag 73760
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 ||||||||||| || ||||||||||||| Sbjct: 65161 cagtccttctctgttgtcttcctctact 65188
>emb|BX276103.13| Zebrafish DNA sequence from clone DKEY-7B17, complete sequence Length = 189322 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 tctctgagctttatgaagat 348 |||||||||||||||||||| Sbjct: 61743 tctctgagctttatgaagat 61724
>emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, complete sequence Length = 194603 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tctctgagctttatgaagat 348 |||||||||||||||||||| Sbjct: 172353 tctctgagctttatgaagat 172372
>dbj|AK098869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A19, full insert sequence Length = 1622 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 ||||||||||| || ||||||||||||| Sbjct: 559 cagtccttctctgttgtcttcctctact 586
>dbj|AK072360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058F04, full insert sequence Length = 1366 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 ||||||||||| || ||||||||||||| Sbjct: 559 cagtccttctctgttgtcttcctctact 586
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgtcgtcttcctctactact 410 |||||||||||||||||||| Sbjct: 91703 cgtcgtcttcctctactact 91684
>dbj|AK064903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L18, full insert sequence Length = 1647 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 cagtccttctccgtcgtcttcctctact 407 ||||||||||| || ||||||||||||| Sbjct: 559 cagtccttctctgttgtcttcctctact 586
>gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (ANL2) gene, complete cds Length = 9277 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cgtcgtcttcctctactact 410 |||||||||||||||||||| Sbjct: 2351 cgtcgtcttcctctactact 2370
>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete sequence Length = 206451 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 69521 ctctccagagtctccaagatccag 69498
>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete sequence Length = 165274 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 97055 ctctccagagtctccaagatccag 97078
>gb|AF128392.1|F15P23 Arabidopsis thaliana BAC F15P23 Length = 18756 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgtcgtcttcctctactact 410 |||||||||||||||||||| Sbjct: 754 cgtcgtcttcctctactact 735
>gb|AE003543.4| Drosophila melanogaster chromosome 3L, section 42 of 83 of the complete sequence Length = 276132 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 tggaggttcttgctggccatggtt 305 ||||||||||||||||| |||||| Sbjct: 191643 tggaggttcttgctggcaatggtt 191620
>gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chromosome y, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 134124 ctctccagagtctccaagatccag 134101
>emb|AL592188.60| Human DNA sequence from clone RP11-337M7 on chromosome 22, complete sequence Length = 161802 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 ctctccagagtctccaagctccag 56 |||||||||||||||||| ||||| Sbjct: 27154 ctctccagagtctccaagatccag 27177
>emb|Z77852.1|HSLUCA2 Human DNA sequence from clone XXcos-2 on chromosome 3, complete sequence Length = 22861 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ctccagctcccacttcacca 70 |||||||||||||||||||| Sbjct: 12432 ctccagctcccacttcacca 12451
>dbj|AP001362.5| Homo sapiens genomic DNA, chromosome 11, clone:RP11-856B14, complete sequence Length = 211382 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gaagaatttctttgggttga 184 |||||||||||||||||||| Sbjct: 84701 gaagaatttctttgggttga 84720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,425,480 Number of Sequences: 3902068 Number of extensions: 9425480 Number of successful extensions: 115302 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114646 Number of HSP's gapped (non-prelim): 651 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
