ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart39b04 |
|---|---|
| Clone Library Name | barley_pub |
>VPS52_HUMAN (Q8N1B4) Vacuolar protein sorting protein 52 (SAC2 suppressor of| actin mutations 2-like protein) Length = 723 Score = 122 bits (307), Expect = 5e-28 Identities = 62/173 (35%), Positives = 106/173 (61%) Frame = +3 Query: 6 LMIRIIHQHQLIMFKRRIPCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNANIKTLWEDDV 185 L I I+ + + I KR +P LD Y ++V LWPRF+++ ++++ S+R+ + + L D Sbjct: 445 LCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDT 504 Query: 186 HPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTVFL 365 PHY+TRRYAEF+++LV +N + + L +L++ +E+ ++++A F K Q VFL Sbjct: 505 RPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFL 564 Query: 366 INNYDLTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVK 524 INNYD+ + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 565 INNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVK 617
>VPS52_CANFA (Q5TJF0) Vacuolar protein sorting protein 52| Length = 723 Score = 122 bits (307), Expect = 5e-28 Identities = 62/173 (35%), Positives = 106/173 (61%) Frame = +3 Query: 6 LMIRIIHQHQLIMFKRRIPCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNANIKTLWEDDV 185 L I I+ + + I KR +P LD Y ++V LWPRF+++ ++++ S+R+ + + L D Sbjct: 445 LCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDT 504 Query: 186 HPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTVFL 365 PHY+TRRYAEF+++LV +N + + L +L++ +E+ ++++A F K Q VFL Sbjct: 505 RPHYITRRYAEFSSALVSINQTVPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFL 564 Query: 366 INNYDLTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVK 524 INNYD+ + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 565 INNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVK 617
>VPS52_RAT (O55166) Vacuolar protein sorting protein 52 (SAC2 suppressor of| actin mutations 2-like protein) Length = 723 Score = 122 bits (306), Expect = 7e-28 Identities = 62/173 (35%), Positives = 106/173 (61%) Frame = +3 Query: 6 LMIRIIHQHQLIMFKRRIPCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNANIKTLWEDDV 185 L I I+ + + I KR +P LD Y ++V LWPRF+++ ++++ S+R+ + + L D Sbjct: 445 LCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDT 504 Query: 186 HPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTVFL 365 PHY+TRRYAEF+++LV +N + + L +L++ +E+ ++++A F K Q VFL Sbjct: 505 RPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQVEVENFVLRVAAEFSSRKEQLVFL 564 Query: 366 INNYDLTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVK 524 INNYD+ + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 565 INNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVK 617
>VPS52_MOUSE (Q8C754) Vacuolar protein sorting protein 52| Length = 723 Score = 122 bits (306), Expect = 7e-28 Identities = 62/173 (35%), Positives = 106/173 (61%) Frame = +3 Query: 6 LMIRIIHQHQLIMFKRRIPCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNANIKTLWEDDV 185 L I I+ + + I KR +P LD Y ++V LWPRF+++ ++++ S+R+ + + L D Sbjct: 445 LCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDT 504 Query: 186 HPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTVFL 365 PHY+TRRYAEF+++LV +N + + L +L++ +E+ ++++A F K Q VFL Sbjct: 505 RPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQVEVENFVLRVAAEFSSRKEQLVFL 564 Query: 366 INNYDLTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVK 524 INNYD+ + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 565 INNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVK 617
>VPS52_YEAST (P39904) Vacuolar protein sorting protein 52 (Suppressor of actin| mutation protein 2) Length = 641 Score = 47.4 bits (111), Expect = 3e-05 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 19/144 (13%) Frame = +3 Query: 3 MLMIRIIHQHQLIMFKRRIPCL-DSYLDKVNMSLWPRFKMVFDLHLSSLRNANIKT---- 167 ++ IR+ +Q Q +R IP + DS+L+ + LWPRF+ + D SLR A I T Sbjct: 434 LISIRVANQLQFESERRGIPSMFDSFLNGQLIQLWPRFQQLVDFQCESLRKAAITTNVAK 493 Query: 168 --------LWEDDVHPHYVTRRYAEFTASLVHL------NVEYGDGQLDLNLERLRMAIE 305 PH +T ++ +F +S + L +++ L ++ RLR E Sbjct: 494 YAGNSSTSNSSPLTSPHELTVQFGKFLSSFLTLAITHKQSIDERSEPLYNSIIRLRNDFE 553 Query: 306 DLLVKLAKMFPKPKMQTVFLINNY 377 ++ K +K K K FL NY Sbjct: 554 TVMTKCSK---KTKSPERFLATNY 574
>URE3_PHOLL (Q7N4Y9) Urease gamma subunit (EC 3.5.1.5) (Urea amidohydrolase| gamma subunit) Length = 100 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +3 Query: 300 IEDLLV-KLAKMFPKPKMQTVFLINNYDLTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYV 476 IE L+V LA + K K + + L NY +A++ A EG + EEV+ + + Sbjct: 8 IEKLMVYTLADVALKRKSRGLKL--NYPEAVAIITAAALEGAREGKTLEEVMDDSRHVLT 65 Query: 477 EEVLMEHFSDLIKFVK 524 +E +M+ +DLI V+ Sbjct: 66 KEDVMDGVADLIPHVQ 81
>Y388_AQUAE (O66709) Hypothetical protein aq_388| Length = 301 Score = 31.2 bits (69), Expect = 2.0 Identities = 21/81 (25%), Positives = 38/81 (46%) Frame = +3 Query: 180 DVHPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTV 359 +V H T +Y+ + V N+ + + ++ N E + +E L + K+F P Sbjct: 217 EVFVHINTEKYSLNISFFVEKNLNFSEVEISSNSEEVLQRLESLKDDIRKIFNVPIRSFN 276 Query: 360 FLINNYDLTIAVLKEAGTEGG 422 FL+ ++ VL+E EGG Sbjct: 277 FLLKE-NVKEEVLREILKEGG 296
>PROC_STAES (Q8CP51) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C| reductase) Length = 271 Score = 30.8 bits (68), Expect = 2.6 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Frame = +3 Query: 135 LSSLRNANIKTLWEDDVHPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLER--LRMAIED 308 + L NA + + H H VT A L H+ +Y +L LER + +I + Sbjct: 146 VDELINAFGSVIEVSEEHLHQVTAITGSGPAFLYHVFEQYVKAGTELGLERNQVEESIRN 205 Query: 309 LLVKLAKMFPKPKMQTVFLINNYDLTIAVL-KEAGTEGGKTQLHFEEVLKSNIAIYVEEV 485 L++ +KM I DL+++ L K ++GG TQ + + + +I E+ Sbjct: 206 LIIGTSKM-----------IERSDLSMSQLRKNITSKGGTTQAGLDALSQYDIVSMFEDC 254 Query: 486 L 488 L Sbjct: 255 L 255
>PROC_STAEQ (Q5HP48) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C| reductase) Length = 271 Score = 30.8 bits (68), Expect = 2.6 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Frame = +3 Query: 135 LSSLRNANIKTLWEDDVHPHYVTRRYAEFTASLVHLNVEYGDGQLDLNLER--LRMAIED 308 + L NA + + H H VT A L H+ +Y +L LER + +I + Sbjct: 146 VDELINAFGSVIEVSEEHLHQVTAITGSGPAFLYHVFEQYVKAGTELGLERNQVEESIRN 205 Query: 309 LLVKLAKMFPKPKMQTVFLINNYDLTIAVL-KEAGTEGGKTQLHFEEVLKSNIAIYVEEV 485 L++ +KM I DL+++ L K ++GG TQ + + + +I E+ Sbjct: 206 LIIGTSKM-----------IERSDLSMSQLRKNITSKGGTTQAGLDALSQYDIVSMFEDC 254 Query: 486 L 488 L Sbjct: 255 L 255
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 30.4 bits (67), Expect = 3.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 Query: 60 PCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNANI 161 P +D + +N S+WP F + LH+ +L+N N+ Sbjct: 536 PMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNL 569
>GL6S_HUMAN (P15586) N-acetylglucosamine-6-sulfatase precursor (EC 3.1.6.14)| (G6S) (Glucosamine-6-sulfatase) Length = 552 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +3 Query: 252 YGDGQLDLNLERLRMAIEDLLVKLAKMFP--KPKMQTVFLINNYDLTIAVLKEAGTEGGK 425 Y GQ L +++ ++ D+ V L P KP + L+ N DL +L AG + K Sbjct: 329 YHTGQFSLPIDKRQLYEFDIKVPLLVRGPGIKPNQTSKMLVANIDLGPTILDIAGYDLNK 388 Query: 426 TQL 434 TQ+ Sbjct: 389 TQM 391
>GLNA_LACLA (Q9CDL9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 446 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 381 LTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEH 497 L +AVL AG +G + +L E ++SNI + EE H Sbjct: 347 LALAVLLAAGLDGVEHKLEAPEAIESNIYVMTEEERKAH 385
>SYY_LISMO (Q8Y6T4) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 419 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 276 NLERLRMAIEDLLVKLAKMFPKPKMQTVFLINNYDLT-----IAVLKEAGTEGGKTQLHF 440 ++E++ +E L V+L K+F ++NNYD T + L++ G E + Sbjct: 90 SMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLS 149 Query: 441 EEVLKSNIAI 470 ++++ S + + Sbjct: 150 KDIVASRLEV 159
>SYY_LISMF (Q71Z70) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 419 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 276 NLERLRMAIEDLLVKLAKMFPKPKMQTVFLINNYDLT-----IAVLKEAGTEGGKTQLHF 440 ++E++ +E L V+L K+F ++NNYD T + L++ G E + Sbjct: 90 SMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLS 149 Query: 441 EEVLKSNIAI 470 ++++ S + + Sbjct: 150 KDIVASRLEV 159
>CP2CK_MACFA (P33262) Cytochrome P450 2C20 (EC 1.14.14.1) (CYPIIC20)| (P450-MKMP13) (P450-MK1) Length = 490 Score = 29.3 bits (64), Expect = 7.7 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Frame = +3 Query: 39 IMFKRRIPCLDSYLDKVNMSLWPRFKMVFDLHLSSLRNA--NIKTLWEDDVHPHYVTRRY 212 ++F++R Y D+ ++L RF + F + S N L + H + Sbjct: 181 VVFQKRF----DYKDENFLTLIKRFTVNFRILTSPWIQVCNNFPLLIDCFPGTHNKLLKN 236 Query: 213 AEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKMFPKPKMQTVFLINNYDLTIA 392 T S + V+ LD+N R I+ L+K+ + K Q+ F I N T+A Sbjct: 237 VALTKSYIREKVKEHQATLDVN--NPRDFIDCFLIKMEQ--EKDNQQSEFTIENLVGTVA 292 Query: 393 VLKEAGTEGGKTQLHF 440 L AGTE T L + Sbjct: 293 DLFVAGTETTSTTLRY 308
>P35_MYCPE (Q50367) Lipoprotein p35 precursor| Length = 362 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +3 Query: 198 VTRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAIEDLLVKLAKM---FPKPKMQTVFLI 368 VT + L+H+NV DGQ D++++ L + + DL +K+ + ++T L Sbjct: 191 VTNNGLSLSEDLLHINVTAKDGQTDVSMD-LAIPVSDLNLKIDGLKISVSGTGIKTSELT 249 Query: 369 NNYDLTIAV 395 NY I + Sbjct: 250 TNYKFNIGI 258
>MYCD_HUMAN (Q8IZQ8) Myocardin| Length = 938 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 Query: 233 KRRCKFSISSCDIVRMHIILPKSLNISIPQAAQMQVK 123 KR+ + +S D+V MHI+ + SIP AQM++K Sbjct: 65 KRKARNRCNSADLVNMHILQASTAERSIP-TAQMKLK 100
>GL6S_CAPHI (P50426) N-acetylglucosamine-6-sulfatase precursor (EC 3.1.6.14)| (G6S) (Glucosamine-6-sulfatase) Length = 559 Score = 28.9 bits (63), Expect = 10.0 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +3 Query: 252 YGDGQLDLNLERLRMAIEDLLVKLAKMFP--KPKMQTVFLINNYDLTIAVLKEAGTEGGK 425 Y GQ L +++ ++ D+ V L P KP + L+ N DL +L AG K Sbjct: 336 YHTGQFSLPIDKRQLYEFDIKVPLLVRGPGIKPNQTSKMLVANIDLGPTILDIAGYGLNK 395 Query: 426 TQL 434 TQ+ Sbjct: 396 TQM 398
>SYY_LISIN (Q92BB1) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 419 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 276 NLERLRMAIEDLLVKLAKMFPKPKMQTVFLINNYDLT-----IAVLKEAGTEGGKTQLHF 440 ++E++ +E L V+L K+F ++NNYD T + L++ G E + Sbjct: 90 SMEQISKNVESLRVQLGKIFDFEGDSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLS 149 Query: 441 EEVLKSNIAI 470 ++++ S + + Sbjct: 150 KDIVASRLEV 159
>VP15_BPAPS (Q9T1T3) Putative protein p15| Length = 101 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 LFGRMMCILTMSQEDMLNLQRLLFISMLNMGTVS 267 L+G ++CIL S+ + N+ RLL + L G+V+ Sbjct: 64 LYGLLVCILRGSRYGVKNINRLLIVGKLCTGSVA 97
>V018_FOWPV (Q9J5I3) Putative ankyrin repeat protein FPV018| Length = 700 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = +3 Query: 168 LWEDDVHPHYVTRRYAEFTASLVHLNVEYGDGQLDLN-LERLRMAIEDLLVKLAKMFPKP 344 LWE+ HP R ++ +N+E + N L A+ED ++ K P Sbjct: 192 LWEETKHPSLYYMRRITIKCAIRAVNIELVKHFISNNLLADTDTALEDYFLEAVKT-NSP 250 Query: 345 KMQTVFLINNYDLTIAVLKEAGT 413 KM +FL + D+ + + + T Sbjct: 251 KMVKLFLDSGIDINSTICENSHT 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,522,884 Number of Sequences: 219361 Number of extensions: 1431013 Number of successful extensions: 3659 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3657 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
