ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart39a11 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core| protein p15; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 33.9 bits (76), Expect = 0.24 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 28/153 (18%) Frame = +2 Query: 83 LLVFVLPSHATATEPTGMLERETKQQILASIP-PHWQENPVL----------------FL 211 LL +P + T P +L E++Q +L P PH NP+L Sbjct: 110 LLALEVPKNRTLDPPKPVLPDESQQDLLFQDPLPHPPHNPLLEPPPYNSPSPPVLSPVSP 169 Query: 212 TSPSGKYAAHFMRSQTVPGAGGLGADFCYIEILDTTEP-----------GAEGRSVWESE 358 T+PS + + S T P + E+ T P G +G S W+S Sbjct: 170 TTPSAPTPSSLVSSSTPPSSPAPP------ELTPRTPPQTPRLRLRRAEGQDGPSTWQSS 223 Query: 359 CLAVSTVNTCALVFSWKGLEVFDGSNSVWHTHD 457 + TVN + + ++++ W TH+ Sbjct: 224 LFPLRTVNRTIQYWPFSASDLYN-----WKTHN 251
>ATN5_YEAST (Q12691) Sodium transport ATPase 5 (EC 3.6.3.7)| Length = 1091 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 338 RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKT 490 R V+ S A +T+ CAL+ +W EV D S + H DT+S F ++ Sbjct: 937 RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRS 985
>ATN2_YEAST (Q01896) Sodium transport ATPase 2 (EC 3.6.3.7)| Length = 1091 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 338 RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKT 490 R V+ S A +T+ CAL+ +W EV D S + H DT+S F ++ Sbjct: 937 RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRS 985
>ATN1_YEAST (P13587) Sodium transport ATPase 1 (EC 3.6.3.7)| Length = 1091 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 338 RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKT 490 R V+ S A +T+ CAL+ +W EV D S + H DT+S F ++ Sbjct: 937 RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRS 985
>CCMA2_SALPA (Q5PKT6) Cytochrome c biogenesis ATP-binding export protein ccmA 2| (EC 3.6.3.41) (Heme exporter protein A 2) Length = 205 Score = 30.4 bits (67), Expect = 2.7 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 370 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 212 HR L + H P ++ RL ENL G A A A+ GLA E V R+ AG++R Sbjct: 73 HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVARLSAGQQR 132 Query: 211 Q 209 + Sbjct: 133 R 133
>CCMA1_SALPA (Q5PI55) Cytochrome c biogenesis ATP-binding export protein ccmA 1| (EC 3.6.3.41) (Heme exporter protein A 1) Length = 205 Score = 30.4 bits (67), Expect = 2.7 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 370 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 212 HR L + H P ++ RL ENL G A A A+ GLA E V R+ AG++R Sbjct: 73 HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVARLSAGQQR 132 Query: 211 Q 209 + Sbjct: 133 R 133
>KCNN1_MOUSE (Q9EQR3) Small conductance calcium-activated potassium channel| protein 1 (SK1) Length = 580 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Frame = +1 Query: 37 NPSSHGARLIHCHV-PLAGVCPPFPRHSDGANRHA*AGNQAANLGEHPAALAGEP 198 +P H L+ H P C P PR + H+ G+ LG P L EP Sbjct: 14 SPQVHSEALLRNHAGPQRACCTPSPRRQVAMSSHSHNGSVGQPLGSGPGFLGWEP 68
>TLL_DROME (P18102) Protein tailless| Length = 452 Score = 30.4 bits (67), Expect = 2.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 99 RTNTSKRHMAMYETSSMAAGVWVSLPGQM 13 R +T +RHMAMY+ + M AG +P ++ Sbjct: 113 RNSTLRRHMAMYKDAMMGAGEMPQIPAEI 141
>PCL_DROME (Q24459) Polycomb protein Pcl (Polycomblike protein)| Length = 1043 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/71 (29%), Positives = 29/71 (40%) Frame = -1 Query: 471 STDSVSCVCHTELLPSNTSSPFHENTSAQVFTVLTAKHSDSHTLRPSAPGSVVSRISM*Q 292 + DS SC S+ SS + T+ V+ DS T P P + +S Sbjct: 239 TADSSSCSS------SSVSSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPG 292 Query: 291 KSAPRPPAPGT 259 KS+P PP T Sbjct: 293 KSSPSPPLLAT 303
>METK_BDEBA (Q6MPK2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 387 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/68 (22%), Positives = 35/68 (51%) Frame = +2 Query: 29 ETQTPAAMELVSYIAMCLLLVFVLPSHATATEPTGMLERETKQQILASIPPHWQENPVLF 208 + ++ ++ + IA + V + HA + + + E T++ I SIP +W ++ F Sbjct: 164 DAKSQVTVQYENGIAKRIDAVVISTQHADSVSNSTIQEFITEELIKKSIPGNWIDSKTKF 223 Query: 209 LTSPSGKY 232 +P+G++ Sbjct: 224 FINPTGRF 231
>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein| LAPSER1) Length = 669 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/75 (32%), Positives = 33/75 (44%) Frame = -3 Query: 421 HLQPFPREHERAGVHGAHRQALRLPHAPPLRARLGGVENLDVAEVGSEAAGARHGLAAHE 242 H Q + E+AG A LR P PP A + D A+V AAG L A + Sbjct: 516 HRQEAEQLREKAGQLDAEAAGLREPPVPPATADPFLLAESDEAKVQRAAAGVGGSLRA-Q 574 Query: 241 VRRVLAGRRRQEQHG 197 V R+ +R+ + G Sbjct: 575 VERLRVELQRERRRG 589
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 29.6 bits (65), Expect = 4.6 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = -3 Query: 403 REHERAGVHGAHRQALRLPHAPPLRARLG--GVENLDVAEVGSEAAGARHGLAAHEVR 236 REHERAG+H PH R R G + S AGA H LA H R Sbjct: 1081 REHERAGLH-------ERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDR 1131
>ANPRA_HUMAN (P16066) Atrial natriuretic peptide receptor A precursor (ANP-A)| (ANPRA) (GC-A) (Guanylate cyclase) (EC 4.6.1.2) (NPR-A) (Atrial natriuretic peptide A-type receptor) Length = 1061 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Frame = +2 Query: 164 LASIPPHWQENPVLFL-------TSPSGKYAAHFMRSQTVPGAGGLG 283 LA++ W+ NP +FL +P G++ AH+ GA LG Sbjct: 99 LAAVDLKWEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALG 145
>KPBB_DROME (Q9VLS1) Probable phosphorylase b kinase beta regulatory chain| (Phosphorylase kinase beta subunit) Length = 1093 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -1 Query: 489 VLRKLLSTDSVSCVCHTELLPSNTSSPFHENTSAQVFTVLTAKHSDSHTLR 337 ++ L STDS+ C+C + N P E V T LT + + +LR Sbjct: 710 IINALRSTDSIYCLCQLWGIILNREGPHFEVNGLNVNTALTQLYHRAGSLR 760
>CCMA_SALTI (P61377) Cytochrome c biogenesis ATP-binding export protein ccmA| (EC 3.6.3.41) (Heme exporter protein A) Length = 205 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 370 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 212 HR L + H P ++ RL ENL G A A A+ GLA E V ++ AG++R Sbjct: 73 HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132 Query: 211 Q 209 + Sbjct: 133 R 133
>CCMA2_SALTY (P61378) Cytochrome c biogenesis ATP-binding export protein ccmA 2| (EC 3.6.3.41) (Heme exporter protein A 2) Length = 205 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 370 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 212 HR L + H P ++ RL ENL G A A A+ GLA E V ++ AG++R Sbjct: 73 HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132 Query: 211 Q 209 + Sbjct: 133 R 133
>CCMA1_SALTY (Q8ZKZ9) Cytochrome c biogenesis ATP-binding export protein ccmA 1| (EC 3.6.3.41) (Heme exporter protein A 1) Length = 205 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 370 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 212 HR L + H P ++ RL ENL G A A A+ GLA E V ++ AG++R Sbjct: 73 HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132 Query: 211 Q 209 + Sbjct: 133 R 133
>APS_RAT (Q9Z200) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 13/54 (24%) Frame = -1 Query: 219 GDVRNNTGFSCQCGGMLAK-----ICCLVSRSSMP--------VGSVAVAWEGR 97 GD +TG SC GG LA C L++ + MP VG+V A GR Sbjct: 301 GDSEEDTGLSCARGGCLASRVTSCSCELLTEADMPRPPETMTAVGAVVTAPHGR 354
>SYGA_ANASP (Q8YVJ2) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)| (Glycine--tRNA ligase alpha chain) (GlyRS) Length = 294 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/64 (31%), Positives = 26/64 (40%) Frame = -3 Query: 205 QHGVLLPVRRDARQDLLLGFPLKHAGWLRRCGVGREDKHQQEAHGNV*DELHGCWGLGFA 26 Q+ VL+ D QD+ L LR G+ ED + N D G WG G+ Sbjct: 76 QYQVLIKPSPDNIQDIYLDS-------LRALGIRPEDHDIRFVEDNWEDATVGAWGTGWE 128 Query: 25 TWSD 14 W D Sbjct: 129 VWLD 132 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,896,810 Number of Sequences: 219361 Number of extensions: 1633002 Number of successful extensions: 6213 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6201 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
