>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +3

Query: 234 SSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRATRRT 398
           S   S    R RSR   RSP+  SS R PA   S +P PR  +   S RR+  R+
Sbjct: 217 SRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRS 271

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 222 PSHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRATR--R 395
           PSH  S P  RH R RSR  P SP    S R    P+   PPPR     S  RR  R   
Sbjct: 294 PSH--SRPRRRH-RSRSRRRP-SPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSA 349

Query: 396 TLGGSA 413
           +L GS+
Sbjct: 350 SLSGSS 355

>NDF2_MOUSE (Q62414) Neurogenic differentiation factor 2 (NeuroD2)|
           (NeuroD-related factor) (NDRF)
          Length = 383

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 216 TRPSHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAA 362
           + P  LS  P    W       PRS +G +  + P  P S AP P  AA
Sbjct: 7   SEPGLLSDVPKFASWGDGDDDEPRSDKGDAPPQPPPAPGSGAPGPARAA 55

>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 1034

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 213 WLPASSKRNTRWMTGSTTHGASNADSLSNKSSGGG 109
           WLPA S R TR +  +  H      SL N+S GGG
Sbjct: 439 WLPAFSARVTRMVQSNRNHPCIIIWSLGNESGGGG 473

>CWLO_BACSU (P40767) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)|
           (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase)
           (PSPA2)
          Length = 473

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -2

Query: 201 SSKRNTRWMTGSTTHGASNADSLSNKSSGGGATLSNS----TILTVG--MTSDERDKLGG 40
           SS  ++   + S+++G+S+  S  + S+ GG  +SNS      ++VG  +      K GG
Sbjct: 304 SSDNSSNGSSNSSSNGSSSKKSSGSNSNSGGTVISNSGGIEGAISVGSSIVGQSPYKFGG 363

Query: 39  GGSALESLNEIF 4
           G +  +  N IF
Sbjct: 364 GRTQSDINNRIF 375

>ANTA_GENTR (Q9ZWR8) Anthocyanin 5-aromatic acyltransferase (EC 2.3.1.153)|
           (5AT)
          Length = 469

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
 Frame = +2

Query: 80  VKIVEFDSVAPPPE----DLLLRLSALEAPWVVLPVIQRVFLFDDAGSQHPPFASLVGXX 247
           VK++E   V PP +    +L L ++  + PW+ L  +Q +  +D    +     +++   
Sbjct: 7   VKVLEKCQVTPPSDTTDVELSLPVTFFDIPWLHLNKMQSLLFYDFPYPRTHFLDTVIPNL 66

Query: 248 XXXXXXXXXXXXXXXGRIVFLPSTGDAA-IECSASEGSGVRFIVAESDE 391
                          G ++    +G+    + S  EG  +  IVAESD+
Sbjct: 67  KASLSLTLKHYVPLSGNLLMPIKSGEMPKFQYSRDEGDSITLIVAESDQ 115

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +3

Query: 222 PSHLSSAPSARHWRPRSRGF-PR---SPEGSSSCRLPATPQSNAPPPREAACGSSSRRAT 389
           PSH  + P  RH R RSR + PR   SP    S R    P+   PPPR     S  RR  
Sbjct: 291 PSH--TRPRRRH-RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRR 347

Query: 390 R--RTLGGSA 413
           R   +L GS+
Sbjct: 348 RSSASLSGSS 357

>TGM1_CANFA (Q9GLK0) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 815

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
 Frame = -1

Query: 322 AGRRQEDDPSGERGKPXXXXXXXXXXXXXXRCEGRVLAPGVV---------EEEHALDDR 170
           +GRR+ D    +  +P                EG ++  GV            EH  D+ 
Sbjct: 73  SGRRRPDSRGSDSRRPGSRASGVNAAGDGTIREGMLVVTGVDLLSSRSDQNRREHHTDEF 132

Query: 169 EYDPRCFQRGQPE*QVL 119
           EYD    +RGQP   VL
Sbjct: 133 EYDELIIRRGQPFHMVL 149

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +3

Query: 222 PSHLSSAPSARHWRPRSRGF-PR---SPEGSSSCRLPATPQSNAPPPREAACGSSSRRAT 389
           PSH  + P  RH R RSR + PR   SP    S R    P+   PPPR     S  RR  
Sbjct: 293 PSH--TRPRRRH-RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 349

Query: 390 R--RTLGGSA 413
           R   +L GS+
Sbjct: 350 RSSASLSGSS 359

>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 238

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 572 PTGRRPLRGASPRRPPPHP 516
           P GRRP  G  P+RPPP P
Sbjct: 6   PQGRRPQGGNQPQRPPPPP 24

>PUM_DROME (P25822) Maternal protein pumilio|
          Length = 1533

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
 Frame = -2

Query: 204 ASSKRNTRWMTGSTTHGASNAD--------SLSNKSSGG----GATLSNSTILTVGMTSD 61
           A  ++ TRW  G   HG  N D        + +N + GG    G+      I T+GM S 
Sbjct: 93  AQKQQQTRWACGDDGHGIDNPDKWKYNPPMNPANAAPGGPPGNGSNGGPGAIGTIGMGSG 152

Query: 60  ERDKLGGGG 34
               LGGGG
Sbjct: 153 ----LGGGG 157

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +3

Query: 222 PSHLSSAPSARHWRPRSRGF-PR---SPEGSSSCRLPATPQSNAPPPREAACGSSSRRAT 389
           PSH  + P  RH R RSR + PR   SP    S R    P+   PPPR     S  RR  
Sbjct: 293 PSH--TRPRRRH-RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 349

Query: 390 R--RTLGGSA 413
           R   +L GS+
Sbjct: 350 RSSASLSGSS 359

>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 572 PTGRRPLRGASPRRPPPHP 516
           P GRRP  G  P+RPPP P
Sbjct: 36  PEGRRPQGGNQPQRPPPPP 54

>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary|
           proline-rich protein Po) (Parotid o protein) [Contains:
           Peptide P-D] (Fragment)
          Length = 276

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 572 PTGRRPLRGASPRRPPPHP 516
           P GRRP  G  P+RPPP P
Sbjct: 2   PQGRRPQGGNQPQRPPPPP 20

>NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)]
          Length = 868

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 216 TRPSHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRATRR 395
           +R S  SS+ S+R     +     S   S S   PA P    P P+      ++RRA  R
Sbjct: 41  SRSSSRSSSRSSRGSTTTTSSSENSGSNSGSIFRPAAPPEPRPQPQPQPRSPAARRAAAR 100

Query: 396 TLGGSAG 416
           +   +AG
Sbjct: 101 SRAAAAG 107

>NDF2_RAT (Q63689) Neurogenic differentiation factor 2 (NeuroD2) (Brain bHLH|
           protein KW8)
          Length = 382

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 216 TRPSHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREA 359
           + P  LS  P    W       PRS +G +  + P  P S AP P  A
Sbjct: 7   SEPGLLSDVPKFASWGDGDDDEPRSDKGDAPPQPPPAPGSGAPGPARA 54

>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
            Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 336  NAPPPREAACGSSSRRATRRTLGGSA 413
            N PPP + +CG  S RAT R +  +A
Sbjct: 974  NTPPPYQVSCGGESDRATARVIDPAA 999

>NGN3_HUMAN (Q9Y4Z2) Neurogenin 3|
          Length = 214

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = +3

Query: 234 SSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQ-----SNAPPPREAACGSSSRRATRRT 398
           S AP+ +  R   R FPR+ E   +C   A P       N     E  C  + R+   R 
Sbjct: 6   SGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTPGNCAEAEEGGCRGAPRKLRARR 65

Query: 399 LGGS 410
            G S
Sbjct: 66  GGRS 69

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 RSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGS 371
           R+RG P    GSS+  LP  P    PPPR  A GS
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPP----PPPRSNAAGS 350

>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = +3

Query: 216 TRPSHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRATR 392
           T P+H    P+ RH  P SR  P +   S     P  P     PPR AA  +   R  R
Sbjct: 18  TPPTHARPDPTRRHPDPESRAPPHARPRSPP---PPAPSPPPLPPRPAAVRAGRDRVGR 73

>DMRT1_PIG (Q9TT01) Doublesex- and mab-3-related transcription factor 1|
          Length = 373

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/62 (27%), Positives = 21/62 (33%)
 Frame = +3

Query: 327 PQSNAPPPREAACGSSSRRATRRTLGGSAGXXXXXXXXXXXXXXXXXXXXXLPRCWLYRS 506
           P +  PPP+  A G S         GGS G                     LP+C   R+
Sbjct: 17  PHAPGPPPQGKAGGFSKALLGTSGGGGSGGSSGGGSGASGMSAASNKKSPRLPKCARCRN 76

Query: 507 HG 512
           HG
Sbjct: 77  HG 78

>NODG_AZOBR (P17611) Nodulation protein G|
          Length = 246

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 308 LPSTGDAAIECSASEGSGVRFIVAESDEADAGRLGGDADHDVDAFKAFVPKLKVDVLPAE 487
           LP+   AA      E  G +F VAE D +           D ++ KA V K++ D+ P +
Sbjct: 35  LPNFEPAAAWLGQQEALGFKFYVAEGDVS-----------DFESCKAMVAKIEADLGPVD 83

Query: 488 VL 493
           +L
Sbjct: 84  IL 85

>ROBO4_RAT (Q80W87) Roundabout homolog 4 precursor|
          Length = 961

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 258 WRPRSRGFPRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRATRRTLGGSA 413
           W PRS G P  P+ S+        Q+++PP R +    ++RR   +  G S+
Sbjct: 576 WDPRSPGVPLLPDTSTFYGSLIAEQTSSPPVRPSPQTPAARRLPPKLTGTSS 627

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
 Frame = +3

Query: 216  TRPSHLSSAPSARHWR------------PRSRGFPRSPEGSSSCRLPATPQSNAPPPREA 359
            ++P+  S+AP+A H              P+  G PR+ +  SS      PQ    P  ++
Sbjct: 3816 SQPTTRSTAPAASHPAGKPQPGPTTAPGPQPAGLPRAEQAGSSKPAAKAPQQGRAPQAQS 3875

Query: 360  ACGSSSRRATRRTLGGSAG 416
            A G +  +   R  GG+ G
Sbjct: 3876 APGPAGAKTGARP-GGTPG 3893

>DBP_BOVIN (Q32PF6) D site-binding protein (Albumin D box-binding protein)|
           (Albumin D-element-binding protein)
          Length = 325

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 282 PRSPEGSSSCRLPATPQSNAPPPREAACGSSSRRAT------RRTLGGSAG 416
           P  P G S    P+  ++ AP PR  +CGS+S R++      R  LG + G
Sbjct: 132 PPPPGGPSPA--PSPVRTPAPSPRPGSCGSASPRSSPGHAPARAALGAAGG 180

>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)|
          Length = 288

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 AQGRRAPCRGAGCTGHTVEGWGGGRRGDAPRSG 558
           A+ RR+P   A   G  V G GGG  G +P  G
Sbjct: 79  AESRRSPAAAAPAPGAPVPGGGGGGGGGSPGRG 111

>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 24/50 (48%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 225  SHLSSAPSARHWRPRSRGFPRSPEGSSSCRLPATPQSNAPP-PREAACGS 371
            S LSS       RP S  FP S  G SS + PA PQ  +P  PR A CGS
Sbjct: 2115 SSLSSDSHLGSVRP-SLDFPASAFGFSSLQ-PAPPQLPSPAEPRSAPCGS 2162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,213,006
Number of Sequences: 219361
Number of extensions: 1318310
Number of successful extensions: 7146
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7117
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)