ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39a07 |
|---|---|
| Clone Library Name | barley_pub |
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 121 bits (303), Expect = 1e-27 Identities = 68/174 (39%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Frame = +3 Query: 66 GARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G R KGTVKWF+ KGFGFI+P+DG EDLFVHQS I+S+G+RSL E + VEF+V +G DG Sbjct: 6 GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65 Query: 246 RTKASDVTAP------------------GGGALSGGSRPSDXXXXXXXXXXXXXXXXXXX 371 RTKA DVT P GGG GGS Sbjct: 66 RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125 Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYKCGEEGHISRDCPXGGGGG 533 C+KCGE GH +RDC GGGG Sbjct: 126 GGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG 179 Score = 37.4 bits (85), Expect = 0.027 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 CYKCGE+GH +R+C GG Sbjct: 196 CYKCGEDGHFARECTSGG 213
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 107 bits (268), Expect = 2e-23 Identities = 58/155 (37%), Positives = 74/155 (47%) Frame = +3 Query: 66 GARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G R KGTVKWF+ KGFGFI+P DG +DLFVHQS+I+S+G+RSL + VEFDV + G Sbjct: 12 GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71 Query: 246 RTKASDVTAPGGGALSGGSRPSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 425 R KA +V+ P G + G S Sbjct: 72 RPKAIEVSGPDGAPVQGNS---------GGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYG 122 Query: 426 XXXXXXXXXXXXXXXCYKCGEEGHISRDCPXGGGG 530 C+KCGE GH++R+C GGGG Sbjct: 123 GRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGG 157 Score = 36.2 bits (82), Expect = 0.059 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 CY CGE GH +RDC GG Sbjct: 182 CYSCGESGHFARDCTSGG 199
>CSPE_BUCBP (Q89A90) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 82.4 bits (202), Expect = 7e-16 Identities = 35/67 (52%), Positives = 54/67 (80%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L+E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKGP 60 Query: 249 TKASDVT 269 + A+ ++ Sbjct: 61 SAANVIS 67
>YBX2B_XENLA (P45441) Y-box-binding protein 2-B (Cytoplasmic RNA-binding protein| p54) (mRNP3) Length = 324 Score = 82.0 bits (201), Expect = 9e-16 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 4/88 (4%) Frame = +3 Query: 45 RFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDV 212 + ++ + +V+GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + Sbjct: 32 QINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGET 91 Query: 213 VEFDVITGDDGRTKASDVTAPGGGALSG 296 VEFDV+ G+ G +A++VT PGG + G Sbjct: 92 VEFDVVEGEKG-AEAANVTGPGGVPVKG 118
>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>CSPE_BUCAP (P63238) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 81.3 bits (199), Expect = 2e-15 Identities = 35/67 (52%), Positives = 53/67 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 60 Query: 249 TKASDVT 269 + A+ ++ Sbjct: 61 SAANVIS 67
>CSPE_BUCAI (P63237) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 81.3 bits (199), Expect = 2e-15 Identities = 35/67 (52%), Positives = 53/67 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 60 Query: 249 TKASDVT 269 + A+ ++ Sbjct: 61 SAANVIS 67
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 80.9 bits (198), Expect = 2e-15 Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V+GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 35 KKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEF 94 Query: 222 DVITGDDGRTKASDVTAPGGGALSG 296 DV+ G+ G +A++VT PGG + G Sbjct: 95 DVVEGEKG-AEAANVTGPGGVPVKG 118
>CSPG_SHIFL (P0A981) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 243 GRTKASDVT 269 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECOLI (P0A978) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 243 GRTKASDVT 269 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECOL6 (P0A979) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 243 GRTKASDVT 269 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECO57 (P0A980) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 243 GRTKASDVT 269 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPE_SHIFL (P0A975) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 249 TKAS 260 + A+ Sbjct: 61 SAAN 64
>CSPE_ECOLI (P0A972) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 249 TKAS 260 + A+ Sbjct: 61 SAAN 64
>CSPE_ECOL6 (P0A973) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 249 TKAS 260 + A+ Sbjct: 61 SAAN 64
>CSPE_ECO57 (P0A974) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 249 TKAS 260 + A+ Sbjct: 61 SAAN 64
>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing| protein A) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing| protein A) (Muscle Y-box protein YB2) (Y-box-binding protein-A) (RYB-A) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing| protein A) (Y-box protein 3) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVI 230 + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEFDV+ Sbjct: 92 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 151 Query: 231 TGDDGRTKASDVTAPGGGALSG 296 G+ G +A++VT PGG + G Sbjct: 152 EGEKG-ARAANVTGPGGVPVKG 172
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 84 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 143 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 144 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 173
>YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 303 Score = 78.2 bits (191), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 30 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 89 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 90 DVVEGEKG-AEAANVTGPEGVPVQGSKYAAD 119
>CSPJ_SALTY (P39818) Cold shock-like protein cspJ| Length = 70 Score = 78.2 bits (191), Expect = 1e-14 Identities = 36/61 (59%), Positives = 46/61 (75%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +R+LNEN VEF V G Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPK 60 Query: 243 G 245 G Sbjct: 61 G 61
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 78.2 bits (191), Expect = 1e-14 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVI 230 + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEFDV+ Sbjct: 90 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 149 Query: 231 TGDDGRTKASDVTAPGGGALSG 296 G+ G +A++VT PGG + G Sbjct: 150 EGEKG-AEATNVTGPGGVPVKG 170
>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)| Length = 305 Score = 78.2 bits (191), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 30 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 89 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT PG + G +D Sbjct: 90 DVVEGEKG-AEAANVTGPGPVPVQGSKYAAD 119
>CSPC_SALTY (P0A9Y9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_SALTI (P0A9Z0) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECOLI (P0A9Y6) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECOL6 (P0A9Y7) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECO57 (P0A9Y8) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>YBOXH_APLCA (P41824) Y-box factor homolog (APY1)| Length = 253 Score = 76.6 bits (187), Expect = 4e-14 Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 221 ++ + ++V GTVKWFNV G+GFI+ +D ED+FVHQ+AI + RS+ + + VEF Sbjct: 26 KKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEF 85 Query: 222 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 314 DV+ G+ G +A++VT P G + G +D Sbjct: 86 DVVEGEKG-NEAANVTGPEGSNVQGSKYAAD 115
>CSPJ_SALTI (P58726) Cold shock-like protein cspJ| Length = 70 Score = 76.6 bits (187), Expect = 4e-14 Identities = 35/61 (57%), Positives = 45/61 (73%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +R+LNEN VEF G Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPA_SHIFL (P0A9Y4) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALTY (P0A9Y2) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALTI (P0A9Y3) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALEN (P0A9Y5) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECOLI (P0A9X9) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECOL6 (P0A9Y0) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECO57 (P0A9Y1) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +3 Query: 72 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 251 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 252 KASDVTA 272 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPC_BUCAI (P57407) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 76.3 bits (186), Expect = 5e-14 Identities = 32/59 (54%), Positives = 46/59 (77%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 A++KG VKWFN +KGFGFI+P DGS+D+FVH S+I+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQDGQKG 59
>CSPA_MICLU (O30875) Major cold shock protein| Length = 67 Score = 75.9 bits (185), Expect = 7e-14 Identities = 36/63 (57%), Positives = 47/63 (74%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 GTVKWFN KG+GFI+PED S D+FVH SAI+ +G++ L END VEF+ G G +A+ Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKELQENDRVEFETQDGPKG-LQAA 62 Query: 261 DVT 269 +VT Sbjct: 63 NVT 65
>CSPC_SHIFL (Q83RI9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 75.5 bits (184), Expect = 9e-14 Identities = 37/68 (54%), Positives = 50/68 (73%) Frame = +3 Query: 69 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 248 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G ++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKG- 59 Query: 249 TKASDVTA 272 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPD_SHIFL (P0A971) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECOLI (P0A968) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECOL6 (P0A969) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECO57 (P0A970) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPI_ECOLI (P0A986) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 73.9 bits (180), Expect = 3e-13 Identities = 33/61 (54%), Positives = 45/61 (73%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +++L EN VEF + G Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPI_ECOL6 (P0A987) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 73.9 bits (180), Expect = 3e-13 Identities = 33/61 (54%), Positives = 45/61 (73%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +++L EN VEF + G Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPB_ECOLI (P36995) Cold shock-like protein cspB (CSP-B)| Length = 71 Score = 73.9 bits (180), Expect = 3e-13 Identities = 35/66 (53%), Positives = 45/66 (68%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWFN KGFGFISP DGS+D+FVH SAI++D YR+L E V F + +G Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAK 60 Query: 243 GRTKAS 260 G A+ Sbjct: 61 GPAAAN 66
>CSPA_MYCTU (P63848) Probable cold shock protein A| Length = 67 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/50 (62%), Positives = 40/50 (80%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 227 +GTVKWFN KGFGFI+PEDGS D+FVH + I+ G+R+L EN VEF++ Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>CSPA_MYCBO (P63849) Probable cold shock protein A| Length = 67 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/50 (62%), Positives = 40/50 (80%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 227 +GTVKWFN KGFGFI+PEDGS D+FVH + I+ G+R+L EN VEF++ Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>CSPC_BACCR (P62171) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 254 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 255 ASDV 266 A+ V Sbjct: 60 ANVV 63
>CSPC_BACCE (P62170) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 254 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 255 ASDV 266 A+ V Sbjct: 60 ANVV 63
>CSPC_BACAN (P62169) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 3e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 254 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 255 ASDV 266 A+ V Sbjct: 60 ANVV 63
>CSP7_STRCL (Q01761) Cold shock-like protein 7.0| Length = 66 Score = 73.6 bits (179), Expect = 3e-13 Identities = 33/53 (62%), Positives = 39/53 (73%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGD 239 GTVKWFN KGFGFI+ + G D+FVH SAI + G+RSL EN VV FDV G+ Sbjct: 4 GTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE 56
>CAPA_PSEFR (P72188) Cold shock protein capA (Cold acclimation protein A)| (C7.0) (Fragment) Length = 64 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPA_STIAU (P72366) Cold shock-like protein cspA| Length = 68 Score = 71.2 bits (173), Expect = 2e-12 Identities = 32/55 (58%), Positives = 38/55 (69%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 GTVKWFN KGFGFI+ + G ED+F H SAI DG+R+L E VEF+V G G Sbjct: 4 GTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKG 58
>CSPB_YERPE (P0A362) Cold shock-like protein cspB| Length = 70 Score = 70.9 bits (172), Expect = 2e-12 Identities = 32/61 (52%), Positives = 43/61 (70%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWF+ KGFGFISP DGS+D+FVH SAI+ + Y++L+E VEF + G Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPB_YEREN (P0A363) Cold shock-like protein cspB| Length = 70 Score = 70.9 bits (172), Expect = 2e-12 Identities = 32/61 (52%), Positives = 43/61 (70%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VKWF+ KGFGFISP DGS+D+FVH SAI+ + Y++L+E VEF + G Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 243 G 245 G Sbjct: 61 G 61
>CSPA_RHIME (Q9Z3S6) Cold shock protein cspA| Length = 69 Score = 70.9 bits (172), Expect = 2e-12 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG-DDGRTKA 257 GTVKWFN TKGFGFI P+DG+ D+FVH SA++ G RSL E V +D++ G++ A Sbjct: 4 GTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTKSGKSSA 63 Query: 258 SDVTA 272 ++ A Sbjct: 64 DNLRA 68
>CSPC_BACSU (P39158) Cold shock protein cspC| Length = 66 Score = 70.1 bits (170), Expect = 4e-12 Identities = 35/61 (57%), Positives = 44/61 (72%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +GTVKWFN KGFGFI E+G +D+FVH SAI+SDG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQAA 61 Query: 258 S 260 + Sbjct: 62 N 62
>CSPB_BACCE (Q45097) Cold shock-like protein cspB| Length = 65 Score = 70.1 bits (170), Expect = 4e-12 Identities = 35/62 (56%), Positives = 43/62 (69%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 254 + G VKWFN KGFGFI E GSED+FVH SAI+SDGY++L E V FD+ G+ G Sbjct: 1 MNGKVKWFNNEKGFGFIEME-GSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGNRGPQA 59 Query: 255 AS 260 A+ Sbjct: 60 AN 61
>CSPA_LISMO (P0A355) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 69.3 bits (168), Expect = 6e-12 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +GTVKWFN KGFGFI E+G +D+FVH SAI+ DG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAA 61 Query: 258 S 260 + Sbjct: 62 N 62
>CSPA_LISIN (P0A356) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 69.3 bits (168), Expect = 6e-12 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +GTVKWFN KGFGFI E+G +D+FVH SAI+ DG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAA 61 Query: 258 S 260 + Sbjct: 62 N 62
>CSP_ARTGO (P54584) Cold shock protein| Length = 67 Score = 68.9 bits (167), Expect = 8e-12 Identities = 32/64 (50%), Positives = 47/64 (73%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +GTVKWFN KGFGFI+P+D D+FVH S I++ G+++L+EN V+F++ G G +A Sbjct: 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKG-PQA 61 Query: 258 SDVT 269 + VT Sbjct: 62 TGVT 65
>CSPA_VIBCH (Q9KN00) Cold shock-like protein cspA| Length = 70 Score = 68.9 bits (167), Expect = 8e-12 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G+VKWFN TKGFGFIS ++G +D+FVH +I S+G+++L E V F V G Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKK 60 Query: 243 GRTKASDVTA 272 G +A+ VTA Sbjct: 61 G-PQAAQVTA 69
>CAPB_PSESM (P0A105) Cold shock protein capB (Cold acclimation protein B)| Length = 69 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59 Query: 243 G 245 G Sbjct: 60 G 60
>CAPB_PSEFR (P0A106) Cold shock protein capB (Cold acclimation protein B)| (C8.0) Length = 69 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59 Query: 243 G 245 G Sbjct: 60 G 60
>CSP2_LACPL (P96349) Cold shock protein 2| Length = 66 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/55 (58%), Positives = 42/55 (76%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 GTVKWFN KGFGFI+ EDG+ D+FVH SAI++DG+++L+E V +D GD G Sbjct: 4 GTVKWFNADKGFGFITGEDGT-DVFVHFSAIQTDGFKTLDEGQKVTYDEEQGDRG 57
>Y4CH_RHISN (P55390) Probable cold shock protein y4cH| Length = 69 Score = 67.4 bits (163), Expect = 2e-11 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG-DDGRTKA 257 GTVKWFN TKGFGFI P+DGS D+FVH SA++ G R L + + ++++ G+ A Sbjct: 5 GTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSGKMSA 64 Query: 258 SDVTA 272 ++ A Sbjct: 65 DNLQA 69
>CSPA_PSEAE (P95459) Major cold shock protein cspA| Length = 69 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/61 (54%), Positives = 40/61 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M R GTVKWFN KGFGFI+PE G+ DLFVH +I+ G++SL E V F V+ G Sbjct: 1 MSNRQNGTVKWFNDAKGFGFITPESGN-DLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 243 G 245 G Sbjct: 60 G 60
>CSPV_VIBCH (Q9KL16) Cold shock protein cspV| Length = 70 Score = 67.0 bits (162), Expect = 3e-11 Identities = 32/70 (45%), Positives = 49/70 (70%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G+VKWFN TKGFGF++ ++G D+FVH ++I+S+G+++L E V F V G Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKK 60 Query: 243 GRTKASDVTA 272 G +AS+V A Sbjct: 61 G-PQASNVVA 69
>CSPF_STRCO (P48859) Cold shock protein scoF| Length = 67 Score = 66.6 bits (161), Expect = 4e-11 Identities = 31/63 (49%), Positives = 39/63 (61%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 GTVKWFN KGFGFI+ + G D+F H S I + GYR L E V FD+ G G +A Sbjct: 4 GTVKWFNSEKGFGFIAQDGGGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQKG-PQAE 62 Query: 261 DVT 269 ++T Sbjct: 63 NIT 65
>CSPB_LISMO (P0A357) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 66.6 bits (161), Expect = 4e-11 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 GTVKWFN KGFGFI E G +D+FVH SAI+ +G+++L+E VEF+++ G G Sbjct: 4 GTVKWFNSEKGFGFIEVE-GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRG 57
>CSPB_LISIN (P0A358) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 66.6 bits (161), Expect = 4e-11 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 GTVKWFN KGFGFI E G +D+FVH SAI+ +G+++L+E VEF+++ G G Sbjct: 4 GTVKWFNSEKGFGFIEVE-GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRG 57
>CSP1_LACPL (P71478) Cold shock protein 1| Length = 66 Score = 66.6 bits (161), Expect = 4e-11 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 GTVKWFN KG+GFI+ EDG+ D+FVH SAI++DG+++L E V FD + D G A+ Sbjct: 4 GTVKWFNADKGYGFITGEDGN-DVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAAN 62 Query: 261 DV 266 V Sbjct: 63 VV 64
>TAPB_PSEFR (P72192) Temperature acclimation protein B (E8.0) (Fragment)| Length = 63 Score = 66.2 bits (160), Expect = 5e-11 Identities = 33/61 (54%), Positives = 39/61 (63%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M R GTVKWFN KGFGFI+PE G DLFVH AI+ +G++SL E V F + G Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 243 G 245 G Sbjct: 60 G 60
>CSPD_BACCE (Q45099) Cold shock-like protein cspD| Length = 66 Score = 65.9 bits (159), Expect = 7e-11 Identities = 33/63 (52%), Positives = 45/63 (71%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 G VKWFN KGFGFI E G ED+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNGEKGFGFIEVE-GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVDGNRG-PQAA 61 Query: 261 DVT 269 +VT Sbjct: 62 NVT 64
>CSPD_BACSU (P51777) Cold shock protein cspD| Length = 66 Score = 65.5 bits (158), Expect = 9e-11 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 G VKWFN KGFGFI E G +D+FVH +AI+ DGY+SL E V F+++ G+ G +AS Sbjct: 4 GKVKWFNNEKGFGFIEVE-GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGNRG-PQAS 61 Query: 261 DV 266 +V Sbjct: 62 NV 63
>CSPA_STRP8 (P0A361) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_STRP3 (P0A360) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_STRP1 (P0C0F1) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_SHEVI (Q9S1B7) Cold shock-like protein cspA| Length = 70 Score = 65.5 bits (158), Expect = 9e-11 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 GTVKWFN KGFGF++ ++G D+FVH AI S+G+++L+E V F+V G G +AS Sbjct: 7 GTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPKG-LQAS 65 Query: 261 DVTA 272 +V A Sbjct: 66 NVIA 69
>CSPA_BORPE (P0A352) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPA_BORPA (P0A354) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPA_BORBR (P0A353) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 9e-11 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPD_HAEIN (P46449) Cold shock-like protein cspD| Length = 72 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/55 (54%), Positives = 35/55 (63%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KGFGFIS E D+F H S I+ DGYRSL V+F+V+ D G Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDKG 58
>CSPD_BACCR (Q816H3) Cold shock-like protein cspD| Length = 66 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/63 (50%), Positives = 45/63 (71%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 G VKWFN KGFGFI E G +D+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRG-PQAA 61 Query: 261 DVT 269 +VT Sbjct: 62 NVT 64
>CSPD_BACAN (Q81K90) Cold shock-like protein cspD| Length = 66 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/63 (50%), Positives = 45/63 (71%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 G VKWFN KGFGFI E G +D+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRG-PQAA 61 Query: 261 DVT 269 +VT Sbjct: 62 NVT 64
>CSPB_BACSU (P32081) Cold shock protein cspB (Major cold shock protein)| Length = 67 Score = 65.1 bits (157), Expect = 1e-10 Identities = 31/65 (47%), Positives = 47/65 (72%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 254 ++G VKWFN KGFGFI E G +D+FVH SAI+ +G+++L E V F+++ G+ G + Sbjct: 2 LEGKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRG-PQ 59 Query: 255 ASDVT 269 A++VT Sbjct: 60 AANVT 64
>CSPA_STRP6 (Q5X9L4) Major cold shock protein| Length = 67 Score = 65.1 bits (157), Expect = 1e-10 Identities = 31/56 (55%), Positives = 40/56 (71%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 +GTVKWFN KGFGFIS E+G +D+F H SAI++ G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQRG 57
>CSPG_SHEVI (Q9S170) Cold shock-like protein cspG| Length = 70 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/68 (45%), Positives = 42/68 (61%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M G VKWFN KGFGFI+ ++G +D+FVH +I SDG+++L E V F+V G Sbjct: 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQK 60 Query: 243 GRTKASDV 266 G A+ V Sbjct: 61 GLQAANVV 68
>CSPD_VIBCH (Q9KSW4) Cold shock-like protein cspD| Length = 76 Score = 63.5 bits (153), Expect = 3e-10 Identities = 33/75 (44%), Positives = 39/75 (52%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M + GTVKWFN KGFGFI PE D+F H S I+ DGYR+L V + V G Sbjct: 1 MYSMATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 60 Query: 243 GRTKASDVTAPGGGA 287 G + V G A Sbjct: 61 GYHASCVVPIEGQSA 75
>CSPB_BACST (P42016) Cold shock protein cspB (Major cold shock protein)| Length = 66 Score = 62.8 bits (151), Expect = 6e-10 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +G VKWFN KG+GFI E GS D+FVH +AI+ +G++SL E V F+++ G+ G A Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKSLEEGQEVSFEIVQGNRGPQAA 61 Query: 258 SDV 266 + V Sbjct: 62 NVV 64
>CSPE_BACCR (Q81DK5) Cold shock-like protein cspE| Length = 67 Score = 62.4 bits (150), Expect = 8e-10 Identities = 31/55 (56%), Positives = 38/55 (69%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KGFGFI DG+ D+FVH SAI DG++SL+E V F+V G+ G Sbjct: 5 GKVKWFNSEKGFGFIEVADGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEEGNRG 58
>CSPE_BACAN (Q81QK2) Cold shock-like protein cspE| Length = 67 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/55 (56%), Positives = 38/55 (69%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 G VKWFN KGFGFI E G+ D+FVH SAI DG++SL+E V F+V G+ G Sbjct: 5 GKVKWFNSEKGFGFIEVEGGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEDGNRG 58
>CSP_THEMA (O54310) Cold shock-like protein| Length = 66 Score = 61.6 bits (148), Expect = 1e-09 Identities = 27/57 (47%), Positives = 42/57 (73%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 ++G VKWF+ KG+GFI+ ++G D+FVH SAI+ +G+++L E VVEF++ G G Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG 56
>CSPB_BACCL (P41016) Cold shock protein cspB| Length = 66 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/63 (46%), Positives = 43/63 (68%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 257 +G VKWFN KG+GFI E GS D+FVH +AI+ +G+++L E V F+++ G+ G A Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRGPQAA 61 Query: 258 SDV 266 + V Sbjct: 62 NVV 64
>CSP_AQUAE (O67327) Cold shock-like protein| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = +3 Query: 78 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 +GTVKWF+ KG+GFI+ ED + D+FVH + I+ +G+++L + VEFDV+ G Sbjct: 4 RGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDTKG 59
>CSPA_RICPR (Q9ZCP9) Cold shock-like protein cspA| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/55 (49%), Positives = 36/55 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 227 M + G VKW+N TK FGFI ++G +D+FVH+SAI + G SL E V FD+ Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAIDAAGLHSLEEGQEVIFDI 55
>CSPE_BACCE (Q45100) Cold shock-like protein cspE (Fragment)| Length = 54 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/49 (61%), Positives = 35/49 (71%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 227 G VKWFN KGFGFI DGS D+FVH SAI DG++SL+E V F+V Sbjct: 5 GKVKWFNSEKGFGFIEVADGS-DVFVHFSAITGDGFKSLDEGQEVSFEV 52
>CSPA_BACCR (Q81GQ6) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRG 58
>CSPA_BACCE (Q45096) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEDGNRG 58
>CSPA_BACAN (Q81TW8) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +3 Query: 75 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRG 58
>CSPB_BACGO (P41018) Cold shock protein cspB (Fragment)| Length = 57 Score = 60.5 bits (145), Expect = 3e-09 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = +3 Query: 87 VKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 260 +KWFN KGFGFI E G +D+FVH SAI+ +G++ L E V F+++ G+ G A+ Sbjct: 1 IKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGNRGPQAAN 57
>CSPA_SHIBO (Q53816) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_SALVI (Q56178) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_ENTAE (Q46664) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_CITFR (Q46051) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_RICCN (Q92GV1) Cold shock-like protein cspA| Length = 70 Score = 59.7 bits (143), Expect = 5e-09 Identities = 26/55 (47%), Positives = 36/55 (65%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 227 M + G VKW+N TK FGFI ++G +D+FVH+SA+ + G SL E V FD+ Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDL 55
>CSPA_KLEPN (Q48493) Major cold shock protein (Fragment)| Length = 46 Score = 59.3 bits (142), Expect = 7e-09 Identities = 26/44 (59%), Positives = 35/44 (79%) Frame = +3 Query: 105 TKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 +KGFGFISP+DGS+D+FVH SAI+SD +++LNE V F + G Sbjct: 1 SKGFGFISPKDGSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENG 44
>CSPA_AERHY (Q44078) Major cold-shock protein (Fragment)| Length = 46 Score = 55.8 bits (133), Expect = 7e-08 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFISP DGS+D+FVH SAI++ G+++L+E VEF + G Sbjct: 2 KGFGFISPTDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQG 44
>CSPA_YEREN (Q56922) Major cold shock protein (Fragment)| Length = 46 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/43 (55%), Positives = 34/43 (79%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+P DGS+D+FVH SAI+S+ +++L+E VEF + G Sbjct: 2 KGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENG 44
>CSPA_AERSA (Q44317) Major cold-shock protein (Fragment)| Length = 46 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/43 (58%), Positives = 33/43 (76%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFISP DGS+D+FVH SAI+S +++L+E VEF + G Sbjct: 2 KGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQG 44
>TAPA_PSEFR (P72191) Temperature acclimation protein A (E7.0) (Fragment)| Length = 59 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/50 (52%), Positives = 32/50 (64%) Frame = +3 Query: 96 FNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 245 FN KGFGFI+PE G DLFVH AI+ +G++SL E V F + G G Sbjct: 1 FNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG 49
>CSPA_STRDY (Q53984) Major cold shock protein (Fragment)| Length = 45 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/43 (55%), Positives = 33/43 (76%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFIS E+G +D+F H SAI+++G+++L E VEFDV G Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVEFDVEEG 43
>CSPA_PHOMO (Q51929) Major cold shock protein (Fragment)| Length = 46 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGF++ +G D+FVH AI S+G+++L E V FDV G Sbjct: 2 KGFGFLTQNNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQG 44
>CSPA_STRPY (P0C0F0) Major cold shock protein (Fragment)| Length = 45 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/43 (53%), Positives = 32/43 (74%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEG 43
>CSPA_PHOPO (Q52287) Major cold shock protein (Fragment)| Length = 46 Score = 47.0 bits (110), Expect = 3e-05 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +3 Query: 108 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 KGFGFI+ ++G D+FVH AI S+G+++L E V F+V G Sbjct: 2 KGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQG 44
>CSDC2_RAT (Q63430) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 63 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSDC2_MOUSE (Q91YQ3) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 63 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSDC2_HUMAN (Q9Y534) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 153 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 62 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 43.5 bits (101), Expect = 4e-04 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CYKCG+ GHISRDCP G GG Sbjct: 170 CYKCGDAGHISRDCPNGQGG 189 Score = 43.5 bits (101), Expect = 4e-04 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CYKCG+ GHISRDCP G GG Sbjct: 142 CYKCGDAGHISRDCPNGQGG 161 Score = 43.1 bits (100), Expect = 5e-04 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CYKCG+EGH+SRDCP GG Sbjct: 99 CYKCGQEGHLSRDCPSSQGG 118 Score = 40.4 bits (93), Expect = 0.003 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 CYKCGE GH+SR+CP G G Sbjct: 198 CYKCGESGHMSRECPSAGSTG 218 Score = 40.0 bits (92), Expect = 0.004 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGG 527 CYKCG+ GHISR+CP GG Sbjct: 224 CYKCGKPGHISRECPEAGG 242 Score = 38.9 bits (89), Expect = 0.009 Identities = 14/15 (93%), Positives = 14/15 (93%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CYKCGE GHISRDCP Sbjct: 255 CYKCGEAGHISRDCP 269 Score = 36.2 bits (82), Expect = 0.059 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C++CGEEGH+SR+CP G Sbjct: 45 CFRCGEEGHMSRECPNEARSG 65 Score = 35.4 bits (80), Expect = 0.10 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C++CGE GH+SRDCP G Sbjct: 72 CFRCGEAGHMSRDCPNSAKPG 92 Score = 30.4 bits (67), Expect = 3.3 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C CG+EGH +R+CP G Sbjct: 18 CRNCGKEGHYARECPEADSKG 38
>CSPH_SALTY (P0A1D9) Cold shock-like protein cspH| Length = 70 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/66 (37%), Positives = 34/66 (51%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G G I+P DG +D+ VH SA + +L VEF I G Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_SALTI (P0A1E0) Cold shock-like protein cspH| Length = 70 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/66 (37%), Positives = 34/66 (51%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G G I+P DG +D+ VH SA + +L VEF I G Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CHSP1_RAT (Q9WU49) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 56 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CHSP1_HUMAN (Q9Y2V2) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 56 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CHSP1_MOUSE (Q9CR86) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 148 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +3 Query: 54 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 182 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 57 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 38.9 bits (89), Expect = 0.009 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C+KCG GH +R+CP GGG G Sbjct: 6 CFKCGRSGHWARECPTGGGRG 26 Score = 32.3 bits (72), Expect = 0.86 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.1 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH++R+C Sbjct: 159 CYRCGESGHLAREC 172 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CGE GHI +DC Sbjct: 120 CYSCGEFGHIQKDC 133 Score = 30.8 bits (68), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH++RDC Sbjct: 99 CYNCGKPGHLARDC 112 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 75 CYNCGRGGHIAKDC 88
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 38.9 bits (89), Expect = 0.009 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C+KCG GH +R+CP GGG G Sbjct: 6 CFKCGRSGHWARECPTGGGRG 26 Score = 32.3 bits (72), Expect = 0.86 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.1 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 74 CYNCGRGGHIAKDC 87
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 38.9 bits (89), Expect = 0.009 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C+KCG GH +R+CP GGG G Sbjct: 6 CFKCGRSGHWARECPTGGGRG 26 Score = 32.3 bits (72), Expect = 0.86 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.1 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 74 CYNCGRGGHIAKDC 87
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 38.9 bits (89), Expect = 0.009 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C+KCG GH +R+CP GGG G Sbjct: 6 CFKCGRSGHWARECPTGGGRG 26 Score = 32.3 bits (72), Expect = 0.86 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.1 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 74 CYNCGRGGHIAKDC 87
>CSPS_STRTR (P81622) Cold shock protein CspSt (Fragment)| Length = 21 Score = 37.7 bits (86), Expect = 0.020 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = +3 Query: 81 GTVKWFNVTKGFGFISPED 137 GTVKWFN KGFGFI+ ED Sbjct: 3 GTVKWFNAEKGFGFITSED 21
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 37.0 bits (84), Expect = 0.035 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGGY 536 CY+CG+EGH S++CP G Y Sbjct: 162 CYRCGQEGHWSKECPLDQNGSY 183
>CSPH_SHIFL (P0A985) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.045 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECOLI (P0A982) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.045 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECOL6 (P0A983) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.045 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECO57 (P0A984) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.045 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 243 GRTKAS 260 G T A+ Sbjct: 61 GPTAAN 66
>CSPF_ECOLI (P0A976) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 35.4 bits (80), Expect = 0.10 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G G I+P DG D+ +H SA+ + VEF I G Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLR 60 Query: 243 GRTKAS 260 G + A+ Sbjct: 61 GPSAAN 66
>CSPF_ECOL6 (P0A977) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 35.4 bits (80), Expect = 0.10 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +3 Query: 63 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 242 M ++ G VK F+ G G I+P DG D+ +H SA+ + VEF I G Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLR 60 Query: 243 GRTKAS 260 G + A+ Sbjct: 61 GPSAAN 66
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 34.7 bits (78), Expect = 0.17 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGG 533 C+KCG GH +R+CP G G G Sbjct: 6 CFKCGRTGHWARECPTGIGRG 26 Score = 32.3 bits (72), Expect = 0.86 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH+++DC Sbjct: 48 CYRCGESGHLAKDC 61 Score = 32.0 bits (71), Expect = 1.1 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE GH++R+C Sbjct: 153 CYRCGESGHLAREC 166 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CGE GHI +DC Sbjct: 114 CYSCGEFGHIQKDC 127 Score = 30.8 bits (68), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH++RDC Sbjct: 93 CYNCGKPGHLARDC 106 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 69 CYNCGRGGHIAKDC 82
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 34.3 bits (77), Expect = 0.23 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 CYKCG GHI+RDC G Sbjct: 85 CYKCGRVGHIARDCRTNG 102 Score = 31.2 bits (69), Expect = 1.9 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG GH+ RDCP Sbjct: 60 CYACGTAGHLVRDCP 74 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CGE GH +R+C G Sbjct: 19 CYNCGENGHQARECTKG 35 Score = 29.3 bits (64), Expect = 7.3 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CG GH +RDC G Sbjct: 118 CYACGSYGHQARDCTMG 134
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 33.9 bits (76), Expect = 0.29 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CY+CG+EGH S++CP G Sbjct: 162 CYRCGKEGHWSKECPIDRSG 181
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 33.9 bits (76), Expect = 0.29 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CY+CG+EGH S++CP G Sbjct: 162 CYRCGKEGHWSKECPVDRSG 181
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 33.9 bits (76), Expect = 0.29 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CY+CG+EGH S++CP G Sbjct: 162 CYRCGKEGHWSKECPIDRSG 181
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 33.5 bits (75), Expect = 0.38 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY C E GHIS+DCP Sbjct: 137 CYNCNETGHISKDCP 151 Score = 31.6 bits (70), Expect = 1.5 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GH+SRDC Sbjct: 118 CYTCGQAGHMSRDC 131 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 C+ C + GHISR+CP Sbjct: 67 CFNCNQTGHISRECP 81
>CSDE1_RAT (P18395) Cold shock domain-containing protein E1 (UNR protein)| Length = 798 Score = 33.5 bits (75), Expect = 0.38 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARYQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 237 DDGRTKASDV 266 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 114 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 266 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>CSDE1_MOUSE (Q91W50) Cold shock domain-containing protein E1| Length = 798 Score = 33.5 bits (75), Expect = 0.38 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARCQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 237 DDGRTKASDV 266 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 114 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 266 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>CSDE1_HUMAN (O75534) Cold shock domain-containing protein E1 (UNR protein)| (N-ras upstream gene protein) Length = 798 Score = 33.5 bits (75), Expect = 0.38 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARCQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 237 DDGRTKASDV 266 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 114 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 266 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 33.1 bits (74), Expect = 0.50 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGGY 536 C+ CGE GH+SR CP G Y Sbjct: 186 CFVCGEMGHLSRSCPDNTKGVY 207
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 33.1 bits (74), Expect = 0.50 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 33.1 bits (74), Expect = 0.50 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 33.1 bits (74), Expect = 0.50 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 33.1 bits (74), Expect = 0.50 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 32.7 bits (73), Expect = 0.66 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGGGY 536 C+ CGE GH+SR CP G Y Sbjct: 186 CFVCGEMGHLSRSCPDNPKGLY 207
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 32.3 bits (72), Expect = 0.86 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = +3 Query: 471 CYKCGEEGHISRDCP--XGGGGG 533 CY+CG GH S++CP G GG Sbjct: 170 CYRCGRSGHWSKECPRLYGSAGG 192
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 32.3 bits (72), Expect = 0.86 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 474 YKCGEEGHISRDCPXGGGGG 533 + CG GH +R CP GG GG Sbjct: 7 FACGHSGHWARGCPRGGAGG 26 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GHI++DC Sbjct: 67 CYNCGRSGHIAKDC 80 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG+ GHI +DC Sbjct: 112 CYSCGKLGHIQKDC 125 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY CG GH++RDC Sbjct: 91 CYTCGRLGHLARDC 104
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 32.0 bits (71), Expect = 1.1 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CGEEGHIS++C Sbjct: 572 CHNCGEEGHISKEC 585
>SYK_LACPL (Q88Z28) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 499 Score = 32.0 bits (71), Expect = 1.1 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Frame = +3 Query: 27 ARVLVLRFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNEN 206 A+ +V R + R KG V GF I G L++ + + D Y + Sbjct: 57 AKQVVATIAGRMLAKRGKGKV-------GFADIWDRSGKMQLYIRKDVVGEDTYHIFKRS 109 Query: 207 DVVEFDVITGDDGRTKASDVTAPGGGA--LSGGSRP 308 D+ +F ITG +T ++T G LS RP Sbjct: 110 DIGDFLGITGQVFKTDFGELTIKVTGLTFLSKALRP 145
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 31.6 bits (70), Expect = 1.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 CY+C +EGH +RDCP G Sbjct: 346 CYRCLKEGHWARDCPTKATG 365
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 30.8 bits (68), Expect = 2.5 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY+C +EGH +RDCP Sbjct: 346 CYRCLKEGHWARDCP 360
>MYO1A_CHICK (P47807) Myosin Ia (Brush border myosin I) (BBM-I) (BBMI) (Myosin I| heavy chain) (MIHC) Length = 1045 Score = 30.8 bits (68), Expect = 2.5 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Frame = +3 Query: 30 RVLVLRFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSE----DLFV---HQSAIKSDGY 188 R L RF R ++ + V N K +PE E + F H AI D Y Sbjct: 29 RTLQERFSRGEIYTYIGEVVISVNPYKPLPIYTPEKVEEYHNCNFFAVKPHIYAIADDAY 88 Query: 189 RSLNENDVVEFDVITGDD--GRTKASDVTAPGGGALSGGSRPSD 314 RSL + D + +ITG+ G+T+AS + A+S D Sbjct: 89 RSLRDRDRDQCILITGESGAGKTEASKLVMSYVAAVSSKGEEVD 132
>SYK_STRP8 (Q8P1X6) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.8 bits (68), Expect = 2.5 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVSEDNYEIFKKADLGDFIGVEG 120 Query: 237 DDGRTKASDVT 269 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>SYK_STRP6 (Q5XD62) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.8 bits (68), Expect = 2.5 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVSEDNYEIFKKADLGDFIGVEG 120 Query: 237 DDGRTKASDVT 269 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 30.4 bits (67), Expect = 3.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CYKCGE+GH + C G Sbjct: 245 CYKCGEKGHYANRCTKG 261
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ R CP Sbjct: 544 CYNCGQIGHLKRSCP 558
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY C + GH RDCP Sbjct: 232 CYNCNQPGHFKRDCP 246
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 30.4 bits (67), Expect = 3.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CYKCGE+GH + C G Sbjct: 187 CYKCGEKGHYANRCTKG 203
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 28.9 bits (63), Expect = 9.5 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG EGH +DC Sbjct: 412 CWKCGREGHQMKDC 425
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 C+ CGE+GH S +CP Sbjct: 264 CFNCGEQGHRSNECP 278
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 C+KCG+ GH+++DC G Sbjct: 413 CFKCGKIGHMAKDCKNG 429
>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6| Length = 1495 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 C+ CG EGHI ++CP Sbjct: 1453 CFICGREGHIKKECP 1467
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 C+ CGE+GH S +CP Sbjct: 475 CFNCGEQGHRSNECP 489 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY C + GH SRDCP Sbjct: 398 CYNCQQPGHNSRDCP 412 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY C + GH SRDCP Sbjct: 284 CYNCQQPGHNSRDCP 298
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ R CP Sbjct: 592 CYNCGQIGHLKRSCP 606
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 28.9 bits (63), Expect = 9.5 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG EGH +DC Sbjct: 412 CWKCGREGHQMKDC 425
>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6| Length = 1491 Score = 30.4 bits (67), Expect = 3.3 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 C+ CG EGHI ++CP Sbjct: 1449 CFICGREGHIKKECP 1463
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 30.0 bits (66), Expect = 4.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG++GH ++DC Sbjct: 545 CFKCGKKGHFAKDC 558
>SYN_PASMU (Q9CN06) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 467 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 363 DIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQ 396
>SYN_HAEDU (Q7VLL7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 467 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 363 DIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQ 396
>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3| Length = 404 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 C++CGEEGH+S C G Sbjct: 354 CFRCGEEGHLSPYCRKG 370
>SYN_VIBPA (Q87NH5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>SYN_PHOPR (Q6LPQ6) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>SYN_PHOLL (Q7N622) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAALDVLAPGIGEIIGGSQ 395
>SYN_ERWCT (Q6D453) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 207 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 305 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKSGHIMANCPERQAG 430
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 410 CWKCGKSGHIMANCPDRQAG 429
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKSGHIMANCPERQAG 430
>RPOB_SYNEL (Q8DL55) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1108 Score = 30.0 bits (66), Expect = 4.3 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = -1 Query: 268 VTSEALVRPSSPVMTSNSTTSFSLRLR*PSDLMADWWTKRSSLPS---SGEMKPNPLVTL 98 V +++ RP +P SF + +R L D +++S+PS GEMKP+P V L Sbjct: 1024 VKGQSIPRPGTP-------ESFKVLMRELQSLCLDISVRKASIPSFDDDGEMKPDPEVDL 1076
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 C+KCG+EGH +DC G Sbjct: 412 CWKCGKEGHQMKDCTNEG 429
>SYK_STRP3 (Q8K880) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.0 bits (66), Expect = 4.3 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVGEDNYEIFKKADLGDFIGVEG 120 Query: 237 DDGRTKASDVT 269 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>SYK_STRP1 (Q9A0V7) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.0 bits (66), Expect = 4.3 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVGEDNYEIFKKADLGDFIGVEG 120 Query: 237 DDGRTKASDVT 269 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 410 CWKCGKSGHIMANCPDRQAG 429
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 30.0 bits (66), Expect = 4.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 C+KCG+EGH +DC G Sbjct: 412 CWKCGKEGHQMKDCTNEG 429
>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1460 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GH+ +CP G Sbjct: 409 CWKCGKSGHVMANCPDRQAG 428
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GH+ +CP G Sbjct: 411 CWKCGKSGHVMANCPERQAG 430
>COPIA_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains: Copia VLP| protein; Copia protease (EC 3.4.23.-)] Length = 1409 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG EGHI +DC Sbjct: 232 CHHCGREGHIKKDC 245
>MYO1B_HUMAN (O43795) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa) (MYH-1c)| Length = 1136 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Frame = +3 Query: 45 RFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSE-------DLFVHQSAIKSDGYRSLNE 203 RF ++ + V N + SPE E +L H A+ + YRSL + Sbjct: 38 RFDHSEIYTYIGSVVISVNPYRSLPIYSPEKVEEYRNRNFYELSPHIFALSDEAYRSLRD 97 Query: 204 NDVVEFDVITGDD--GRTKASDVTAPGGGALSG 296 D + +ITG+ G+T+AS + A+ G Sbjct: 98 QDKDQCILITGESGAGKTEASKLVMSYVAAVCG 130
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGH++R+C Sbjct: 397 CFNCGKEGHLARNC 410 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 418 CWKCGKEGHQMKDC 431
>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1290 Score = 29.6 bits (65), Expect = 5.6 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = -1 Query: 241 SSPVMTSNSTTSFSLRLR*PSDLMADWWTKRSSLPSSGEMKPNPLVTLNHFTVPLTLA 68 SSPV S S P D AD W SS ++G +P+PL + +V +L+ Sbjct: 54 SSPVSPQESPKHESKSGLEPEDPSADEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLS 111
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE+GH + DC Sbjct: 135 CYECGEKGHYAYDC 148
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ R CP Sbjct: 400 CYNCGKFGHMQRQCP 414
>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 518 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GH+ +CP G Sbjct: 409 CWKCGKSGHVMANCPDRQAG 428
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GH+ +CP G Sbjct: 411 CWKCGKSGHVMANCPERQAG 430
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMTNCPDRQAG 430
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMANCPERQAG 430
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMTNCPDRQAG 430
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMANCPERQAG 430
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CG+ GH++R C G Sbjct: 387 CYNCGKPGHLARQCRQG 403
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CG+ GH++R C G Sbjct: 387 CYNCGKPGHLARQCRQG 403
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CG+ GH++R C G Sbjct: 387 CYNCGKPGHLARQCRQG 403
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXG 521 CY CG+ GH++R C G Sbjct: 387 CYNCGKPGHLARQCRQG 403
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 CY+CGE+GH + DC Sbjct: 106 CYECGEKGHYAYDC 119
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 C++CG+ GH ++CP G Sbjct: 161 CFRCGKPGHYIKNCPTNG 178
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ R CP Sbjct: 404 CYNCGKFGHMQRQCP 418
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMTNCPDRQAG 430
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGGGG 530 C+KCG+ GHI +CP G Sbjct: 411 CWKCGKPGHIMTNCPDRQAG 430
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGH++R+C Sbjct: 391 CFNCGKEGHLARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGH++R+C Sbjct: 397 CFNCGKEGHLARNC 410 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 418 CWKCGKEGHQMKDC 431
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 471 CYKCGEEGHISRDCP 515 CY CG+ GH+ R CP Sbjct: 399 CYNCGKFGHMQRQCP 413
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGH++R+C Sbjct: 402 CFNCGKEGHLARNC 415
>SYK_STRMU (Q8DUW8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 496 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +3 Query: 57 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 236 R M R KG V GF + +G ++V + + D Y+ + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQIYVRKDTVGDDNYQIFKKADIGDFLGVEG 120 Query: 237 DDGRTKASDVT 269 + RT +++ Sbjct: 121 EIMRTDMGELS 131
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 471 CYKCGEEGHISRDCPXGG 524 C++CG+ GH ++CP G Sbjct: 162 CFRCGKPGHYIKNCPTNG 179
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 29.6 bits (65), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+ GHI RDC Sbjct: 526 CFSCGKTGHIKRDC 539
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 5.6 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGH++R+C Sbjct: 391 CFNCGKEGHLARNC 404 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>FTZF1_DROME (P33244) Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)| Length = 1027 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +3 Query: 165 SAIKSDGYRSLNENDVVEFDVITG-DDGRTKASDVTAPGGGALSGGSRPS 311 +++ + + S +++F+V G DDG + T PG G+ SG S Sbjct: 246 TSVSTSNFLSSTTAQLLDFEVQVGKDDGHISTTTTTGPGSGSASGSGSGS 295
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425 Score = 29.3 bits (64), Expect = 7.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425 Score = 29.3 bits (64), Expect = 7.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.3 bits (64), Expect = 7.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.3 bits (64), Expect = 7.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +3 Query: 471 CYKCGEEGHISRDC 512 C+ CG+EGHI+++C Sbjct: 392 CFNCGKEGHIAKNC 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,863,153 Number of Sequences: 219361 Number of extensions: 646017 Number of successful extensions: 3324 Number of sequences better than 10.0: 285 Number of HSP's better than 10.0 without gapping: 2999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3274 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
