ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA decarboxylase 2 (OSJNBa0032N04.8), mRNA Length = 1581 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Plus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 97 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 156 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 157 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 216 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 217 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 276 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 277 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 336 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 337 gcgcacttcccggcgtcgagcagcaccgccggcgccctcggcgaggcgctcgccgccggc 396 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 397 atcaacgtcgttcccttcacgtgggccgcctcgcctgccgcc 438
>ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1602 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Plus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 232 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcggcgaggcgctcgcggccggc 411 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || || ||||||||||| ||||||||||||||| Sbjct: 412 atcaacgtcgtgcctttcacgtgggcggcctcgccggccgcc 453
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032N04, from chromosome 10, complete sequence Length = 159445 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Minus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 63618 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 63559 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 63558 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 63499 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 63498 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 63439 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 63438 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 63379 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 63378 gcgcacttcccggcgtcgagcagcaccgccggcgccctcggcgaggcgctcgccgccggc 63319 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 63318 atcaacgtcgttcccttcacgtgggccgcctcgcctgccgcc 63277
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0019N10, from chromosome 10, complete sequence Length = 192267 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Plus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 168762 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 168821 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 168822 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 168881 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 168882 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 168941 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 168942 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 169001 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 169002 gcgcacttcccggcgtcgagcagcaccgccggcgccctcggcgaggcgctcgccgccggc 169061 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 169062 atcaacgtcgttcccttcacgtgggccgcctcgcctgccgcc 169103
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Minus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 11745557 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11745498 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 11745497 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11745438 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 11745437 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11745378 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 11745377 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11745318 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 11745317 gcgcacttcccggcgtcgagcagcaccgccggcgccctcggcgaggcgctcgccgccggc 11745258 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 11745257 atcaacgtcgttcccttcacgtgggccgcctcgcctgccgcc 11745216
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Minus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 32495981 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 32495922 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 32495921 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 32495862 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 32495861 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 32495802 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 32495801 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 32495742 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| Sbjct: 32495741 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcggcgaggcgctcgcggccggc 32495682 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || || ||||||||||| ||||||||||||||| Sbjct: 32495681 atcaacgtcgtgcctttcacgtgggcggcctcgccggccgcc 32495640 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 15065038 gccgcctcgccggccgccgc 15065057 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 5450496 gccgcctcgccggccgccgc 5450515
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Minus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 83502 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 83443 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 83442 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 83383 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 83382 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 83323 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 83322 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 83263 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| Sbjct: 83262 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcggcgaggcgctcgcggccggc 83203 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || || ||||||||||| ||||||||||||||| Sbjct: 83202 atcaacgtcgtgcctttcacgtgggcggcctcgccggccgcc 83161
>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full insert sequence Length = 1922 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Plus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 235 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 294 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 295 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 354 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 355 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 414 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 415 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 474 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| Sbjct: 475 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcggcgaggcgctcgcggccggc 534 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || || ||||||||||| ||||||||||||||| Sbjct: 535 atcaacgtcgtgcctttcacgtgggcggcctcgccggccgcc 576
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 234 bits (118), Expect = 2e-58 Identities = 286/342 (83%) Strand = Plus / Minus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 11752897 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11752838 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 11752837 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11752778 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 11752777 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11752718 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 11752717 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11752658 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 11752657 gcgcacttcccggcgtcgagcagcaccgccggcgccctcggcgaggcgctcgccgccggc 11752598 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 11752597 atcaacgtcgttcccttcacgtgggccgcctcgcctgccgcc 11752556
>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan decarboxylase, complete cds Length = 1602 Score = 226 bits (114), Expect = 6e-56 Identities = 285/342 (83%) Strand = Plus / Plus Query: 198 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 257 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171 Query: 258 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 317 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231 Query: 318 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 377 | ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 232 cgacagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291 Query: 378 aaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatttt 437 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351 Query: 438 gcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggc 497 || |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcggcgaggcgctcgcggccggc 411 Query: 498 atcaacgttgtccccttcacgtgggccgcctcgccggccgcc 539 |||||||| || || ||||||||||| ||||||||||||||| Sbjct: 412 atcaacgtcgtgcctttcacgtgggcggcctcgccggccgcc 453
>gb|AY111785.1| Zea mays CL244_1 mRNA sequence Length = 1880 Score = 202 bits (102), Expect = 9e-49 Identities = 257/308 (83%), Gaps = 3/308 (0%) Strand = Plus / Plus Query: 199 tgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgatt 258 |||| ||||| || |||||||| || ||||| ||||| || ||||||||||| |||| | Sbjct: 281 tgctcgacgcagacgagttccgccggcagggccaccaagtcatcgacttcatcgccgact 340 Query: 259 actatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgca 318 |||| ||| |||||| ||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 341 actacggccgcatggacgactaccccgtgcaccccagcgtcaaccccggcttcctgcgcc 400 Query: 319 acctgctccccgcggaggccccgtgccgtccggag---cccgacgcgtttggctccgcgc 375 || |||||||| |||| |||| ||||||||| ||||||||||| || |||||| Sbjct: 401 gccagctccccgacaaggcgccgtcgcgtccggagtcgcccgacgcgttcggtgccgcgc 460 Query: 376 tcaaggacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccatt 435 | ||||||||| ||| ||||||| || ||||||||||| ||||||||| ||||||| | Sbjct: 461 tgcgggacgtccgtgacctcatcctgccaggcatgacgcactggcagagcgcccgccact 520 Query: 436 ttgcccacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccg 495 | || |||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| Sbjct: 521 tcgcgcacttcccggcgtccagcagcaccgtcggcgccctcggcgaggccctcacggccg 580 Query: 496 gcatcaac 503 |||||||| Sbjct: 581 gcatcaac 588
>ref|XM_475687.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1698 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 381 gacgtccgcgacatcatcctccccggcatgacgcattggcagagcccccgccattttgcc 440 ||||||||||| |||| ||||| || | || || ||||||||||| || || || || Sbjct: 253 gacgtccgcgagctcatgctcccggggctcactcactggcagagcccacgtcacttcgcg 312 Query: 441 cacttcccggcgtcgagcagcaccatcggcgccctcggtgaggcgctcaccgccggcatc 500 |||||| ||||| || ||||| | | ||||||||||| ||||| ||| |||||||| || Sbjct: 313 cacttctcggcgacggccagcaacgtgggcgccctcggcgaggctctcgccgccggcctc 372 Query: 501 aacgttgtccccttcacgtgggccgcctcgccggc 535 ||||| ||| |||||||||| ||||||||||| Sbjct: 373 aacgtcaaccctttcacgtgggaagcctcgccggc 407
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 417 tggcagagcccccgccattttgcccacttcccggcgtcgagcagcaccatcggcgccctc 476 ||||||||||| || || || || |||||| ||||| || ||||| | | ||||||||| Sbjct: 35006 tggcagagcccacgtcacttcgcgcacttctcggcgacggccagcaacgtgggcgccctc 34947 Query: 477 ggtgaggcgctcaccgccggcatcaacgttgtccccttcacgtgggccgcctcgccggc 535 || ||||| ||| |||||||| ||||||| ||| |||||||||| ||||||||||| Sbjct: 34946 ggcgaggctctcgccgccggcctcaacgtcaaccctttcacgtgggaagcctcgccggc 34888
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 417 tggcagagcccccgccattttgcccacttcccggcgtcgagcagcaccatcggcgccctc 476 ||||||||||| || || || || |||||| ||||| || ||||| | | ||||||||| Sbjct: 25092351 tggcagagcccacgtcacttcgcgcacttctcggcgacggccagcaacgtgggcgccctc 25092292 Query: 477 ggtgaggcgctcaccgccggcatcaacgttgtccccttcacgtgggccgcctcgccggc 535 || ||||| ||| |||||||| ||||||| ||| |||||||||| ||||||||||| Sbjct: 25092291 ggcgaggctctcgccgccggcctcaacgtcaaccctttcacgtgggaagcctcgccggc 25092233
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 214 agttccggcgccagggtcaccagg 237 |||||||||||||||||||||||| Sbjct: 91725 agttccggcgccagggtcaccagg 91702
>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 91331 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 gctccccgcggaggccccgtgc 344 |||||||||||||||||||||| Sbjct: 16894 gctccccgcggaggccccgtgc 16915
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 tgggccgcctcgccggccgccg 540 |||||||||||||||||||||| Sbjct: 2194232 tgggccgcctcgccggccgccg 2194253
>ref|XM_470371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 627 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 147 gcgccggagaagaagatgcactgct 123
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgct 542 ||||||||||||||||||||| Sbjct: 78470 gccgcctcgccggccgccgct 78450
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 ggccgcctcgccggccgccgc 541 ||||||||||||||||||||| Sbjct: 93766 ggccgcctcgccggccgccgc 93746
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 7604 gcgccggagaagaagatgcactgct 7628
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 35006703 gcgccggagaagaagatgcactgct 35006727
>gb|AC087699.11| Homo sapiens chromosome 15, clone RP11-64K10, complete sequence Length = 149287 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 ttggcagagcccccgccattt 436 ||||||||||||||||||||| Sbjct: 65114 ttggcagagcccccgccattt 65134
>gb|AC079030.13| Homo sapiens 12 BAC RP3-342K15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99241 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 520 gggccgcctcgccggccgccgctga 544 |||||||| |||||||||||||||| Sbjct: 94464 gggccgccccgccggccgccgctga 94488
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ggccgcctcgccggccgccgc 541 ||||||||||||||||||||| Sbjct: 8924461 ggccgcctcgccggccgccgc 8924481 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgct 542 ||||||||||||||||||||| Sbjct: 3236515 gccgcctcgccggccgccgct 3236535 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 6473947 gccgcctcgccggccgccgc 6473966
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 35096775 gcgccggagaagaagatgcactgct 35096799
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 8777 gcgccggagaagaagatgcactgct 8753
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 511 ccttcacgtgggccgcctcgccggc 535 ||||||||||||||||| ||||||| Sbjct: 3391257 ccttcacgtgggccgccgcgccggc 3391281
>dbj|AK110581.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E09, full insert sequence Length = 897 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 gcgccggagaagaagatgcaatgct 192 |||||||||||||||||||| |||| Sbjct: 163 gcgccggagaagaagatgcactgct 139
>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds Length = 1531 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ggccgcctcgccggccgccgc 541 ||||||||||||||||||||| Sbjct: 92 ggccgcctcgccggccgccgc 112
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ggccgcctcgccggccgccgc 541 ||||||||||||||||||||| Sbjct: 8996124 ggccgcctcgccggccgccgc 8996144 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgct 542 ||||||||||||||||||||| Sbjct: 3245220 gccgcctcgccggccgccgct 3245240 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 6540414 gccgcctcgccggccgccgc 6540433
>gb|DQ177326.1| Ethanoligenens harbinense strain YUAN-3 Fe-hydrogenase large subunit gene, partial cds Length = 1041 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 tccggagcccgacgcgtttgg 367 ||||||||||||||||||||| Sbjct: 846 tccggagcccgacgcgtttgg 866
>ref|XM_466797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 56 gccgcctcgccggccgccgc 75
>ref|NM_193807.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3369 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 155 gccgcctcgccggccgccgc 136
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 43164 gccgcctcgccggccgccgc 43145
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 aggacgtccgcgacatcatc 398 |||||||||||||||||||| Sbjct: 5340499 aggacgtccgcgacatcatc 5340480
>gb|AF082663.3| Rhodococcus sp. NCIMB12038 naphthalene degradation gene cluster, complete sequence Length = 11548 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 acttcccggcgtcgagcagc 461 |||||||||||||||||||| Sbjct: 5629 acttcccggcgtcgagcagc 5610
>emb|AJ401612.1|RSP401612 Rhodococcus sp. 1BN narA gene for putative cis-naphthalene 1,2-dioxygenase Length = 1975 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 acttcccggcgtcgagcagc 461 |||||||||||||||||||| Sbjct: 1512 acttcccggcgtcgagcagc 1493
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 81090 gccgcctcgccggccgccgc 81109
>tpg|BK000747.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M166, complete sequence Length = 1122 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 640 gccgcctcgccggccgccgc 621
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 70283 gccgcctcgccggccgccgc 70264
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 520 gggccgcctcgccggccgccgctg 543 |||||||||||||| ||||||||| Sbjct: 3183477 gggccgcctcgccgtccgccgctg 3183500
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 18807 gccgcctcgccggccgccgc 18826
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tcccggcgtcgagcagcacc 464 |||||||||||||||||||| Sbjct: 4052310 tcccggcgtcgagcagcacc 4052291
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 16255005 gccgcctcgccggccgccgc 16254986
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 8444787 gccgcctcgccggccgccgc 8444768
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 24722994 gccgcctcgccggccgccgc 24722975
>dbj|AB053207.1| Flavobacterium sp. SK1022 gene for endo-beta-N-acetylglucosaminidase, complete cds Length = 945 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 cgtcgagcagcaccatcggc 470 |||||||||||||||||||| Sbjct: 665 cgtcgagcagcaccatcggc 684
>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0784G04 Length = 157458 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 94617 gccgcctcgccggccgccgc 94636
>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1329D01 Length = 141938 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 91285 gccgcctcgccggccgccgc 91304
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 47336 gccgcctcgccggccgccgc 47355
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 37004 gccgcctcgccggccgccgc 37023
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1372_D06 Length = 129242 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 104392 gccgcctcgccggccgccgc 104373
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 22642 gccgcctcgccggccgccgc 22623
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 76380 gccgcctcgccggccgccgc 76361
>dbj|AK105265.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D05, full insert sequence Length = 3749 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 247 gccgcctcgccggccgccgc 228
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 16208238 gccgcctcgccggccgccgc 16208219
>emb|AL732380.4|CNS08C93 Oryza sativa chromosome 12, . BAC OSJNBb0119N22 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79613 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gccgcctcgccggccgccgc 541 |||||||||||||||||||| Sbjct: 2056 gccgcctcgccggccgccgc 2037
>dbj|AB024936.1| Rhodococcus sp. CIR2 naphthalene degradation genes (rnoA1, rnoA2, rnoA3, rnoA4, rnoB), complete cds Length = 12534 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 acttcccggcgtcgagcagc 461 |||||||||||||||||||| Sbjct: 6623 acttcccggcgtcgagcagc 6604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,968,693 Number of Sequences: 3902068 Number of extensions: 2968693 Number of successful extensions: 59822 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58422 Number of HSP's gapped (non-prelim): 1388 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
