ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39a04 |
|---|---|
| Clone Library Name | barley_pub |
>VATC_YEAST (P31412) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) (V-ATPase 42 kDa subunit) Length = 391 Score = 102 bits (254), Expect = 7e-22 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 10/164 (6%) Frame = +1 Query: 85 YLLVSLPTSI----APSSHRD----EALTALRATVTNDVGATHPFAIPEFKIGTLDALVQ 240 ++L+SLP + AP S D E L RA V++ F IPEFKIG+LD L+ Sbjct: 10 FILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSD-------FKIPEFKIGSLDTLIV 62 Query: 241 QADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKT--INDKPVDQYLRNFQWNKVK 414 ++++L+K++N + K+ + L+ + +E +T IN+ PV +YL NFQW K Sbjct: 63 ESEELSKVDNQIGASIGKIIEILQGL---NETSTNAYRTLPINNMPVPEYLENFQWQTRK 119 Query: 415 YRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 ++ D+ I DLI L+ E +D DV+A ++ YN K+ LAAAER Sbjct: 120 FKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 163
>VATC_MANSE (Q9U5N1) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 385 Score = 98.2 bits (243), Expect = 1e-20 Identities = 56/156 (35%), Positives = 82/156 (52%) Frame = +1 Query: 79 SKYLLVSLPTSIAPSSHRDEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADDLA 258 S+Y L+S P EAL +AT N++ + F IP+ K+GTLD LV +DDL Sbjct: 2 SEYWLISAPGD-KTCQQTWEALN--QATKANNLSLNYKFPIPDLKVGTLDQLVGLSDDLG 58 Query: 259 KLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRADRPIA 438 KL+ GV KV L +L+ K+ + T N+ + YL FQW+ KY + + Sbjct: 59 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLTANNDDLPHYLTRFQWDMAKYPIKQSLR 118 Query: 439 DLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 ++ D++ K+V ID D+K K S YN K L E+ Sbjct: 119 NIADIISKQVGQIDADLKVKSSAYNALKGNLQNLEK 154
>VATC_CAEEL (Q9XXU9) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 97.1 bits (240), Expect = 3e-20 Identities = 51/162 (31%), Positives = 89/162 (54%) Frame = +1 Query: 61 ITMSKGSKYLLVSLPTSIAPSSHRDEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQ 240 ++ + +Y L+S+P + D+ + T TN + IP+ K+GTLD LV Sbjct: 1 MSSATSGEYWLISVPGEKGANDAWDKLNRSTGNTSTNS-----KYLIPDLKVGTLDQLVG 55 Query: 241 QADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYR 420 +DDL+KL+ +A V+ K+ +L+ D++K+ + I +K + Y+ FQW KY Sbjct: 56 LSDDLSKLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYP 115 Query: 421 ADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 + + L +++ K++ IDND+K K YN K+ALA+ +R Sbjct: 116 LKQSLKVLSEIIGKQISQIDNDLKVKSLTYNNLKNALASMDR 157
>VATC_ASCSS (Q9NDR5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 94.0 bits (232), Expect = 2e-19 Identities = 49/156 (31%), Positives = 80/156 (51%) Frame = +1 Query: 79 SKYLLVSLPTSIAPSSHRDEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADDLA 258 S++ ++S P P + A + N + + F+IPE K+GTLD+L+ DDL Sbjct: 2 SEFWVISAPGDKTPQQTYERLQKATMGSGQN-LSNCYKFSIPELKVGTLDSLIGLTDDLG 60 Query: 259 KLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRADRPIA 438 KL+ GV KV + +L+ + K+ + + + ++ FQWN KY +PI Sbjct: 61 KLDTFCEGVCRKVASYMGEVLEDQKDKLSSNLSAGEGTLVNFMHRFQWNMAKYPTKQPIK 120 Query: 439 DLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 L ++L K V +D D+++K YN KS+L ER Sbjct: 121 SLTEILSKVVTQVDTDLRSKSQAYNNLKSSLQNMER 156
>VATC_HUMAN (P21283) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 92.8 bits (229), Expect = 6e-19 Identities = 47/126 (37%), Positives = 72/126 (57%) Frame = +1 Query: 169 NDVGATHPFAIPEFKIGTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQ 348 N++ T F IP+ K+GTLD LV +D+LAKL+ GVV KV + +L+ + KVQ+ Sbjct: 29 NNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQE 88 Query: 349 QKTINDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSA 528 N + Y+ FQW+ KY + + ++ +++ K V IDND+K++ S YN K Sbjct: 89 NLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGN 148 Query: 529 LAAAER 546 L ER Sbjct: 149 LQNLER 154
>VATC_BOVIN (P21282) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 92.4 bits (228), Expect = 7e-19 Identities = 47/129 (36%), Positives = 73/129 (56%) Frame = +1 Query: 160 TVTNDVGATHPFAIPEFKIGTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAK 339 T N++ + F IP+ K+GTLD LV +D+LAKL+ GVV KV + +L+ + K Sbjct: 26 TKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDK 85 Query: 340 VQQQKTINDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQT 519 VQ+ N + Y+ FQW+ KY + + ++ +++ K V IDND+K++ S YN Sbjct: 86 VQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNL 145 Query: 520 KSALAAAER 546 K L ER Sbjct: 146 KGNLQNLER 154
>VATC_MOUSE (Q9Z1G3) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 90.5 bits (223), Expect = 3e-18 Identities = 46/129 (35%), Positives = 73/129 (56%) Frame = +1 Query: 160 TVTNDVGATHPFAIPEFKIGTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAK 339 T N++ + F IP+ K+GTLD LV +D+LAKL+ GVV KV + +L+ + K Sbjct: 26 TKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDK 85 Query: 340 VQQQKTINDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQT 519 VQ+ + + Y+ FQW+ KY + + ++ +++ K V IDND+K++ S YN Sbjct: 86 VQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNL 145 Query: 520 KSALAAAER 546 K L ER Sbjct: 146 KGNLQNLER 154
>VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 375 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Frame = +1 Query: 79 SKYLLVSLPTSIAPSSHRDEALTALRATVTNDVGAT--HPFAIPEFKIGTLDALVQQADD 252 S+Y +VSLP + SS L+ ++ T + F IP ++GTLD+L+ DD Sbjct: 3 SRYWVVSLPVKDSASS----LWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDD 58 Query: 253 LAKLENAAHGVVNKVGDSLRAI--LDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRAD 426 L K + GV K+ + + + G E+ T++ PVD YL F W++ KY Sbjct: 59 LLKSNSFVEGVSQKIRRQIEELERISGVESNAL---TVDGVPVDSYLTRFVWDEAKYPTM 115 Query: 427 RPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 P+ +++D +Q +V I++D+K + ++YN + L A R Sbjct: 116 SPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINR 155
>VATC_SCHPO (Q9HDW6) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 394 Score = 72.8 bits (177), Expect = 6e-13 Identities = 36/155 (23%), Positives = 81/155 (52%), Gaps = 1/155 (0%) Frame = +1 Query: 67 MSKGSKYLLVSLPTSIAPSSHR-DEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQ 243 MSK S + ++S+P+ ++ D+ L + T+ + PF +P FK+ +LD L+ Q Sbjct: 1 MSK-SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQ 59 Query: 244 ADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRA 423 ++ L K + ++K+ D ++ + ++ + DK +Y+ +F WN ++ Sbjct: 60 SEQLTKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHM 119 Query: 424 DRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSA 528 ++ I+++ D + E+ +ND++ + + + Q SA Sbjct: 120 NKTISEISDRITSEIISFENDIRTRQTSFQQASSA 154
>VATC_HORVU (Q9SCB9) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 354 Score = 71.6 bits (174), Expect = 1e-12 Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Frame = +1 Query: 193 FAIPEFKIGTLDALVQQADDLAK----LENAAHGVVNKVGDSLRAILDGDEAKVQQQKTI 360 F +P+ + GTLD+L+ +DDL K +E +H + ++ D RA G E T+ Sbjct: 44 FTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERA--GGVEPGTL---TV 98 Query: 361 NDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAA 540 + PVD YL F W++ KY + P+ + + +Q +V I++D+K + ++Y KS L A Sbjct: 99 DGVPVDSYLTRFVWDEGKYPVNAPLKETVASIQSQVAKIEDDMKVRVAEYGNVKSQLGAI 158 Query: 541 ER 546 R Sbjct: 159 NR 160
>VATC_DICDI (P54648) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 368 Score = 70.9 bits (172), Expect = 2e-12 Identities = 41/160 (25%), Positives = 79/160 (49%) Frame = +1 Query: 67 MSKGSKYLLVSLPTSIAPSSHRDEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQA 246 MS+ ++ L+S P P + + + A N + F P ++GTL++L+ Sbjct: 1 MSETQEFWLISAPN--LPGADIFDQVNQKTAK-ENSLSENKKFNTPALRVGTLNSLITLN 57 Query: 247 DDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRAD 426 D+L K++ K+ L ++ G + + +IN + QYL+ F W+ KY Sbjct: 58 DELQKIDTIVESTTKKIARQLVDLV-GTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLK 116 Query: 427 RPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 + ++++ + V ID+D+K K S+Y+ S++A+ ER Sbjct: 117 LSLQEIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEER 156
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Frame = +1 Query: 79 SKYLLVSLPTSIAPSSHRDEA--LTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADD 252 S+Y ++S P D LT+ + + N+ + F IP+ K+GTLD LV +DD Sbjct: 3 SEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNN----YKFHIPDLKVGTLDQLVGLSDD 58 Query: 253 LAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKP 372 L KL+ + KV + L +L+ K+ + N+ P Sbjct: 59 LGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNSP 98 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +1 Query: 379 QYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAER 546 QYL FQW+ KY + + ++ D++ K++ ID D+K K YN K L E+ Sbjct: 427 QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEK 482
>SYA_PROMM (Q7V419) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 892 Score = 34.7 bits (78), Expect = 0.18 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +1 Query: 136 EALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADDL--AKLENAAHGVVNKVGDSL 309 +ALTA RA + V + A +G LV + D + A L+NAA G+++++GD Sbjct: 754 KALTAARAELA--VAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDGA 811 Query: 310 RAILDG-----DEAKV 342 +L G DE KV Sbjct: 812 AVVLGGLPDPSDEGKV 827
>TBFA_EPTST (Q90501) Thread biopolymer filament alpha subunit| Length = 643 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/100 (24%), Positives = 39/100 (39%) Frame = +1 Query: 241 QADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYR 420 Q +DL A H ++ + + I E +V+ +T+ WN K Sbjct: 254 QIEDLRTTNTALHSEIDHLTTIINDITTKYEEQVEVTRTLET----------DWNTNKDN 303 Query: 421 ADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAA 540 D ++DL Q +VQG+D + YN + AA Sbjct: 304 IDNTYLTIVDL-QTKVQGLDEQINTTKQIYNARVREVQAA 342
>SPEA_BACTN (Q8A2B1) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)| Length = 630 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +1 Query: 184 THPFAIPEFKIGTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDE-AKVQQQKTI 360 T P+ + F +G ++ +L NA H VN+ G ++ I+DG+ A+V Sbjct: 526 TEPYYLAVFLVGAYQEILGDMHNLFGDTNAVHVSVNEKGYNIEQIIDGETVAEVLDYVQY 585 Query: 361 NDKPVDQYLRNFQWNKVK 414 N K + + L + VK Sbjct: 586 NPKKLVRTLETWVTKSVK 603
>RAD50_YEAST (P12753) DNA repair protein RAD50 (EC 3.6.-.-) (153 kDa protein)| Length = 1312 Score = 30.8 bits (68), Expect = 2.6 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Frame = +1 Query: 151 LRATVTNDVGATHPFAIPEFKIGTLDALVQQADDLAK-LENAAHGVVNKVGDSLRAILDG 327 L+ TV N+ H + E I TL+++ ++ D+ K LE A K S L+ Sbjct: 719 LKDTVQNEKEYLHSLRLLEKHIITLNSINEKIDNSQKCLEKAKEET--KTSKSKLDELEV 776 Query: 328 DEAKVQQQKTINDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKA---K 498 D K++ +K + + + RP+ + L+KE++ ++N K + Sbjct: 777 DSTKLKDEKELAESEI-----------------RPLIEKFTYLEKELKDLENSSKTISEE 819 Query: 499 FSQYNQTKSALAAAE 543 S YN ++ + + Sbjct: 820 LSIYNTSEDGIQTVD 834
>KPTA1_ARCFU (O29841) Probable RNA 2'-phosphotransferase 1 (EC 2.7.-.-)| Length = 216 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 194 NGWVAPTSLVTVARRAVSASSRWLLGAMDVGSDTSRYLLPLDMV 63 NGWV SL V +R ++ WL+ A+ + RY L D + Sbjct: 58 NGWVNLESLARVVKRRYKWANIWLIKALVYSDEKQRYELKGDKI 101
>CARA_NEUCR (P22572) Carbamoyl-phosphate synthase arginine-specific small| chain, mitochondrial precursor (EC 6.3.5.5) (Arginine-specific carbamoyl-phosphate synthetase, glutamine chain) (CPS-A) Length = 453 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +1 Query: 376 DQYLRN---FQWNKVKYRADRPIADLIDLLQKEVQGID 480 D+Y+ N F+ N YR +RP +ID+L KE G++ Sbjct: 408 DKYMENVELFKSNSQVYRDNRPTQFMIDILSKERVGVE 445
>WA_EMENI (Q03149) Conidial yellow pigment biosynthesis polyketide synthase (EC| 2.3.1.-) (PKS) Length = 2157 Score = 29.6 bits (65), Expect = 5.8 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = -2 Query: 503 LNLALTSLSMPWTSFCSRSIRSAMGRSARYLTL--FHWKLRRYWSTGLSLIVFCCCTLAS 330 L+ +L+SL + + S R L L + W L+ YW + C T S Sbjct: 1219 LSNSLSSLYLAGVDINWKQYHQDFSSSHRVLPLPTYKWDLKNYWIPYRNNF---CLTKGS 1275 Query: 329 SPSRMARRLSPTLLTT 282 S S + L PT LTT Sbjct: 1276 SMSAASASLQPTFLTT 1291
>YAGK_ECOLI (P77657) Hypothetical protein yagK| Length = 208 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +1 Query: 232 LVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEA-KVQQQKTINDKPV 375 +V D++ N GV++++ +SLRA L+ D KV++ K I P+ Sbjct: 45 IVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPL 93
>GAL1_PYRFU (Q9HHB6) Galactokinase (EC 2.7.1.6) (Galactose kinase)| Length = 352 Score = 29.3 bits (64), Expect = 7.6 Identities = 24/70 (34%), Positives = 33/70 (47%) Frame = +1 Query: 223 LDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQYLRNFQW 402 LD V++A +L G G S A++D D+AK TI D + +YL F W Sbjct: 285 LDFFVKKAMELGAYGARLTGA--GFGGSAIALVDKDKAK-----TIGDAILREYLAKFSW 337 Query: 403 NKVKYRADRP 432 K KY +P Sbjct: 338 -KAKYFVVKP 346
>TEGU_SHV21 (Q01056) Probable large tegument protein| Length = 2469 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/86 (26%), Positives = 38/86 (44%) Frame = +1 Query: 109 SIAPSSHRDEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADDLAKLENAAHGVV 288 SI P S + + L L ++ + T F L+ DDL+ L+NA + Sbjct: 1389 SICPKSQK-QRLVVLDQSINTHLNITQQFY-------NLEKTANTTDDLSVLQNAISTLD 1440 Query: 289 NKVGDSLRAILDGDEAKVQQQKTIND 366 K +A +D ++K+QQ K + D Sbjct: 1441 LKRVQGGKATVDSWQSKLQQMKAMLD 1466
>SET1_CAEEL (Q22795) Protein set-1| Length = 242 Score = 28.9 bits (63), Expect = 9.9 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Frame = +1 Query: 133 DEALTALRATVTNDVGATHPFAIPEFKIGTLDALVQQADDLAKLENAAHGVVNKVGDSL- 309 DEA ALR TV GT + L++ D+ K V + GD + Sbjct: 87 DEAKHALRDTVLK---------------GTNERLLEVYKDVVKGRGIRTKVNFEKGDFVV 131 Query: 310 ---RAILDGDEAKVQQQKTINDKPVDQYLRNFQWNKVKYRAD 426 +++ EAKV +++ ND+ + Y+ F+ N K+ D Sbjct: 132 EYRGVMMEYSEAKVIEEQYSNDEEIGSYMYFFEHNNKKWCID 173
>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase| Length = 893 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = +1 Query: 403 NKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAAE 543 ++++ + D + ++ L+ E+ +D ++ SQ ++ KSAL AAE Sbjct: 194 SQIEAKEDADLHATLNALESELDSLDEEISNYESQRDKAKSALDAAE 240
>SYC_GEOKA (Q5L429) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/59 (23%), Positives = 32/59 (54%) Frame = +1 Query: 346 QQKTINDKPVDQYLRNFQWNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTK 522 Q+KT ++K + +LR F+ +AD++ L K+ + +D +++A + N+ + Sbjct: 384 QEKTTSEKVIHAFLREFE----------QLADVLGLTLKQDELLDEEIEALIQKRNEAR 432
>SYA_YERPS (Q66E68) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 875 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = +1 Query: 217 GTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQ 381 G + L QQ+D L + + G ++ + D +RA+LD + ++ + + D+ Q Sbjct: 702 GAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQ 756
>SYA_YERPE (Q8ZBT8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 875 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = +1 Query: 217 GTLDALVQQADDLAKLENAAHGVVNKVGDSLRAILDGDEAKVQQQKTINDKPVDQ 381 G + L QQ+D L + + G ++ + D +RA+LD + ++ + + D+ Q Sbjct: 702 GAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQ 756
>VP5_BTV10 (P07389) Outer capsid protein VP5| Length = 526 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Frame = +1 Query: 238 QQADDLAKLENAAHGVVNKVGDSLRAILD--GDEAK----VQQQKTINDKPVDQYLRNFQ 399 +Q ++L +L+ + K G L + D EAK V++Q T+ K VD Y Sbjct: 105 EQRNELVRLKYNKE-ITEKFGKELGEVYDFMNGEAKEVEAVEEQYTMLCKAVDSY----- 158 Query: 400 WNKVKYRADRPIADLIDLLQKEVQGIDNDVKAKFSQYNQTKSALAAA 540 K+ D +A L LQ+E D +Y Q AL +A Sbjct: 159 -EKILKEEDSKMAILARALQREAAERSEDEIKMVKEYRQKIDALKSA 204
>COBQ_METKA (Q8TVH5) Probable cobyric acid synthase| Length = 494 Score = 28.9 bits (63), Expect = 9.9 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Frame = +1 Query: 214 IGTLDALVQQADDLAKLENAAHGVVNKVGDSLRAI-LDGDEAKVQQQKTINDKPVDQYLR 390 +G LDA+ D K+ + GVVN LR I ++G E + + +T D+P LR Sbjct: 358 LGLLDAVTVFPSDAGKVTVRSEGVVNH--PHLRGIRVEGFE--IHEGRTYTDEPHLVRLR 413 Query: 391 NFQWNK-----VKYRADRPI 435 + N+ YR DRP+ Sbjct: 414 SGYGNRGCFLDGAYRTDRPV 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,957,584 Number of Sequences: 219361 Number of extensions: 1091779 Number of successful extensions: 4901 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4744 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4894 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
