ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_369834.1| Magnaporthe grisea 70-15 hypothetical protein (MG06349.4) partial mRNA Length = 900 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 205 gagttcaagattggcacgctcgacgcgctggtgcagcaggccgacgacctcgccaagct 263 |||||||| || || || ||||| ||||| || ||||||||||| |||||| ||||||| Sbjct: 130 gagttcaaaatcggtactctcgatgcgctagttcagcaggccgatgacctcaccaagct 188
>gb|AE004720.1| Pseudomonas aeruginosa PAO1, section 281 of 529 of the complete genome Length = 12547 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 310 cgcgccatcctcgacggcgacga 332 ||||||||||||||||||||||| Sbjct: 7788 cgcgccatcctcgacggcgacga 7810
>ref|XM_957106.1| Neurospora crassa OR74A hypothetical protein (NCU05200.1) partial mRNA Length = 3081 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cccagcagccaccgcgacgagg 139 |||||||||||||||||||||| Sbjct: 2179 cccagcagccaccgcgacgagg 2200
>ref|XM_324556.1| Neurospora crassa OR74A hypothetical protein (NCU05200.1) partial mRNA Length = 3081 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cccagcagccaccgcgacgagg 139 |||||||||||||||||||||| Sbjct: 2179 cccagcagccaccgcgacgagg 2200
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 208 ttcaagattggcacgctcgacgcgctggtg 237 ||||||| ||||||| |||||||||||||| Sbjct: 2806622 ttcaagaatggcacgatcgacgcgctggtg 2806593 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 agcaggccgacgacctcgcc 258 |||||||||||||||||||| Sbjct: 320854 agcaggccgacgacctcgcc 320873
>ref|XM_747353.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g10810) partial mRNA Length = 1176 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Plus Query: 199 atccccgagttcaagattggcacgctcgacgcgctggtgcagcaggccga 248 ||||| || |||||||| || || |||||||| ||||||||||| ||||| Sbjct: 133 atcccggaattcaagatcggtactctcgacgctctggtgcagcaagccga 182
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggccgacgacctcgccaagctg 264 |||||||||||||||||||||| Sbjct: 10201786 ggccgacgacctcgccaagctg 10201765
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502B12 Length = 197160 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggccgacgacctcgccaagctg 264 |||||||||||||||||||||| Sbjct: 181057 ggccgacgacctcgccaagctg 181036
>dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0649C11 Length = 138870 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggccgacgacctcgccaagctg 264 |||||||||||||||||||||| Sbjct: 6013 ggccgacgacctcgccaagctg 5992
>dbj|AK121119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F05, full insert sequence Length = 5217 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 ggccgacgacctcgccaagctg 264 |||||||||||||||||||||| Sbjct: 174 ggccgacgacctcgccaagctg 195
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 cgacaacgacgtcaaggccaagttc 501 |||| |||||||||||||||||||| Sbjct: 33161 cgacgacgacgtcaaggccaagttc 33185
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 caaggtgcagcagcagaagac 356 ||||||||||||||||||||| Sbjct: 38120 caaggtgcagcagcagaagac 38140
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 gtgcagcaggccgacgacctcgcca 259 ||||||||||||||||| ||||||| Sbjct: 5974030 gtgcagcaggccgacgaactcgcca 5974006
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 gtgcagcaggccgacgacctcgcca 259 |||||||||||| |||||||||||| Sbjct: 3014111 gtgcagcaggccaacgacctcgcca 3014087
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0089D15, from Chromosome 10, complete sequence Length = 164679 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 518 ccaagtcggccctggccgccgccgagcgc 546 |||||||||||| | |||||||||||||| Sbjct: 76206 ccaagtcggcccagtccgccgccgagcgc 76234
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 202 cccgagttcaagattggcacgctcgacgc 230 |||||||||||||||||| |||| ||||| Sbjct: 962960 cccgagttcaagattggctcgctggacgc 962932
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 tcaacgacaagcccgtcgaccagta 383 |||||||||||||||||||| |||| Sbjct: 471964 tcaacgacaagcccgtcgacgagta 471988
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 518 ccaagtcggccctggccgccgccgagcgc 546 |||||||||||| | |||||||||||||| Sbjct: 4079377 ccaagtcggcccagtccgccgccgagcgc 4079405
>gb|AF326277.1|AF326277 Hordeum vulgare ent-kaurenoic acid oxidase (KAO1) mRNA, complete cds Length = 1844 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 acgacctcgccaagctggaga 268 ||||||||||||||||||||| Sbjct: 1438 acgacctcgccaagctggaga 1458
>ref|NM_209595.1| Eremothecium gossypii ADR146Cp (ADR146C), mRNA Length = 1137 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 202 cccgagttcaagattggcacgctcgacgc 230 |||||||||||||||||| |||| ||||| Sbjct: 145 cccgagttcaagattggctcgctggacgc 173
>gb|U32579.1|ZMU32579 Zea mays DWARF3 (dwarf3) mRNA, complete cds Length = 1724 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 acgacctcgccaagctggaga 268 ||||||||||||||||||||| Sbjct: 1406 acgacctcgccaagctggaga 1426
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 518 ccaagtcggccctggccgccgccgagcgc 546 |||||||||||| | |||||||||||||| Sbjct: 4080198 ccaagtcggcccagtccgccgccgagcgc 4080226
>gb|L11301.1|SG1REITERE Plasmid pSG1/17 (from S.griseus YP5344) DNA fragment containing junction between 3.8 kb reiterated sequences Length = 223 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 gccctggccgccgccgagcgc 546 ||||||||||||||||||||| Sbjct: 75 gccctggccgccgccgagcgc 55
>ref|XM_482311.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ccgcgccgaccgccccatcgccga 440 ||||||||||||| |||||||||| Sbjct: 195 ccgcgccgaccgcaccatcgccga 218
>ref|XM_450308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2553 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 2490 tcgcgcccagcagccaccgc 2509
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gacagcctgcgcgccatcctcgac 324 |||||||||||||| ||||||||| Sbjct: 236114 gacagcctgcgcgcaatcctcgac 236137
>ref|XM_526649.1| PREDICTED: Pan troglodytes similar to cytochrome P450, family 2, subfamily U, polypeptide 1; cytochrome P450 P450TEC (LOC471267), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 571 gcgctggtgcagcaggccga 590
>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster, complete sequence Length = 32299 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cagcaggccgacgacctcgc 257 |||||||||||||||||||| Sbjct: 21364 cagcaggccgacgacctcgc 21345
>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05, complete sequence Length = 109853 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 acgacctcgccaagctggag 267 |||||||||||||||||||| Sbjct: 7181 acgacctcgccaagctggag 7200
>ref|XM_615255.2| PREDICTED: Bos taurus similar to cytochrome P450, family 2, subfamily U, polypeptide 1 (LOC535227), mRNA Length = 1731 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 415 gcgctggtgcagcaggccga 434
>ref|XM_362279.1| Magnaporthe grisea 70-15 hypothetical protein (MG04724.4) partial cds Length = 1959 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gccaaggtgcagcagcagaagacg 357 |||||||||||||||||| ||||| Sbjct: 1735 gccaaggtgcagcagcagcagacg 1758
>ref|XM_593042.2| PREDICTED: Bos taurus similar to G protein-coupled receptor kinase-interactor 1 (LOC515088), mRNA Length = 2841 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cgaggccaaggtgcagcagc 349 |||||||||||||||||||| Sbjct: 1440 cgaggccaaggtgcagcagc 1459
>gb|AY343323.1| Homo sapiens cytochrome P450 mRNA, complete cds Length = 3544 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 454 gcgctggtgcagcaggccga 473
>ref|XM_953529.1| Neurospora crassa OR74A hypothetical protein (NCU09897.1) partial mRNA Length = 1158 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 474 catcgacaacgacgtcaaggccaagttcagccagta 509 |||||| ||||| || ||||||||||||| |||||| Sbjct: 396 catcgataacgatgttaaggccaagttcaaccagta 431
>ref|XM_329644.1| Neurospora crassa OR74A hypothetical protein (NCU09897.1) partial mRNA Length = 1158 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 474 catcgacaacgacgtcaaggccaagttcagccagta 509 |||||| ||||| || ||||||||||||| |||||| Sbjct: 396 catcgataacgatgttaaggccaagttcaaccagta 431
>ref|NM_183075.2| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1 (CYP2U1), mRNA Length = 4760 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 498 gcgctggtgcagcaggccga 517
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gcgcgccatcctcgacggcg 328 |||||||||||||||||||| Sbjct: 3013584 gcgcgccatcctcgacggcg 3013565
>ref|XM_653707.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1195.2), mRNA Length = 1062 Score = 40.1 bits (20), Expect = 7.4 Identities = 56/68 (82%) Strand = Plus / Plus Query: 359 tcaacgacaagcccgtcgaccagtacctgcgcaacttccagtggaacaaggtcaagtacc 418 ||||||| |||||||| ||||||||||| || | ||| ||||| || ||||| |||| Sbjct: 293 tcaacgataagcccgtggaccagtacctccgaacgttctcatggaataaagtcaaatacc 352 Query: 419 gcgccgac 426 |||||||| Sbjct: 353 gcgccgac 360
>gb|BC012027.1| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1, mRNA (cDNA clone IMAGE:4706746), complete cds Length = 1576 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 474 gcgctggtgcagcaggccga 493
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 acgcgctggtgcagcaggcc 246 |||||||||||||||||||| Sbjct: 2446964 acgcgctggtgcagcaggcc 2446945
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 436 gccgacctgatcgacctgctgcag 459 ||||||||||||| |||||||||| Sbjct: 104121 gccgacctgatcgccctgctgcag 104144
>ref|XM_548300.2| PREDICTED: Canis familiaris similar to G protein-coupled receptor kinase-interactor 1 (LOC491180), mRNA Length = 2558 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cgaggccaaggtgcagcagc 349 |||||||||||||||||||| Sbjct: 1362 cgaggccaaggtgcagcagc 1381
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gcaggccgacgacctcgcca 259 |||||||||||||||||||| Sbjct: 3914062 gcaggccgacgacctcgcca 3914081 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cgcccacggcgtcgtcaacaaggt 296 ||||| |||||||||||||||||| Sbjct: 2828728 cgcccgcggcgtcgtcaacaaggt 2828705
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ggcgctgacggccctgcgcg 157 |||||||||||||||||||| Sbjct: 1656261 ggcgctgacggccctgcgcg 1656280
>ref|XM_499971.1| Yarrowia lipolytica CLIB122, YALI0A11143g predicted mRNA Length = 1152 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 206 agttcaagattggcacgctcgacgcgctggtgcagc 241 |||||||||||||||| || || |||||||||||| Sbjct: 128 agttcaagattggcactctggagtcgctggtgcagc 163
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 ccgacctgatcgacctgctgcaga 460 |||||||||||||||||| ||||| Sbjct: 90255 ccgacctgatcgacctgcagcaga 90278
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 ccgacctgatcgacctgctgcaga 460 |||||||||||||||||| ||||| Sbjct: 1157 ccgacctgatcgacctgcagcaga 1180
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 ctgcagaaggaggtccagggcatc 477 |||||||||||| ||||||||||| Sbjct: 130235 ctgcagaaggagatccagggcatc 130212
>emb|AL583926.1|MLEPRTN10 Mycobacterium leprae strain TN complete genome; segment 10/10 Length = 269203 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gcgccatcctcgacggcgac 330 |||||||||||||||||||| Sbjct: 26820 gcgccatcctcgacggcgac 26839
>emb|AJ131690.1|REU131690 Ralstonia eutropha rpoN gene and ORF155, ORF263, ORF130, ORF95 and ORF151 Length = 4643 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 agcaggccgacgacctcgcc 258 |||||||||||||||||||| Sbjct: 920 agcaggccgacgacctcgcc 901
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cctgctggtgtcgctgccga 106 |||||||||||||||||||| Sbjct: 101080 cctgctggtgtcgctgccga 101061
>emb|AJ809518.1| Halorubrum distributum partial rpoB gene for RNA polymerase B subunit, strain ATCC 51197 Length = 1305 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tcctcgacggcgacgaggcc 336 |||||||||||||||||||| Sbjct: 1235 tcctcgacggcgacgaggcc 1216
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 cgaggcgctgacggccctgcgcgc 158 |||||||||||| ||||||||||| Sbjct: 1828443 cgaggcgctgaccgccctgcgcgc 1828420
>gb|AE005685.1| Caulobacter crescentus CB15 section 11 of 359 of the complete genome Length = 10290 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gtcggccctggccgccgccg 541 |||||||||||||||||||| Sbjct: 2130 gtcggccctggccgccgccg 2111
>dbj|AK123292.1| Homo sapiens cDNA FLJ41298 fis, clone BRAMY2040478 Length = 2810 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 62 gcgctggtgcagcaggccga 43
>gb|AE011634.1| Xanthomonas axonopodis pv. citri str. 306, section 12 of 469 of the complete genome Length = 13286 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 436 gccgacctgatcgacctgctgcag 459 ||||||||||||| |||||||||| Sbjct: 11793 gccgacctgatcgccctgctgcag 11816
>gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, complete sequence Length = 163317 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgctggtgcagcaggccga 248 |||||||||||||||||||| Sbjct: 145503 gcgctggtgcagcaggccga 145522
>gb|L78819.1|MSGB912CS Mycobacterium leprae cosmid B912 DNA sequence Length = 44448 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcgccatcctcgacggcgac 330 |||||||||||||||||||| Sbjct: 35776 gcgccatcctcgacggcgac 35757
>gb|AF326408.1|AF326408 Pseudomonas putida strain mt-2 Mn(II)-oxidation-associated multicopper oxidase (cumA) gene, partial cds Length = 1059 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gcgccgaccgccccatcgcc 438 |||||||||||||||||||| Sbjct: 809 gcgccgaccgccccatcgcc 828
>gb|AF326406.1|AF326406 Pseudomonas putida strain ATCC 12633 Mn(II)-oxidation-associated multicopper oxidase (cumA) gene, partial cds Length = 882 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gcgccgaccgccccatcgcc 438 |||||||||||||||||||| Sbjct: 704 gcgccgaccgccccatcgcc 723
>gb|AF326398.1|AF326398 Pseudomonas sp. ADP Mn(II)-oxidation-associated multicopper oxidase (cumA) gene, partial cds Length = 1062 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gcgccgaccgccccatcgcc 438 |||||||||||||||||||| Sbjct: 812 gcgccgaccgccccatcgcc 831
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 20748116 tcgcgcccagcagccaccgc 20748135 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 4020195 tcgcgcccagcagccaccgc 4020176
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ccgcgccgaccgccccatcgccga 440 ||||||||||||| |||||||||| Sbjct: 19375905 ccgcgccgaccgcaccatcgccga 19375928
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 acgacctcgccaagctggag 267 |||||||||||||||||||| Sbjct: 15893492 acgacctcgccaagctggag 15893511
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 acgacgtcaaggccaagttc 501 |||||||||||||||||||| Sbjct: 1347920 acgacgtcaaggccaagttc 1347901
>gb|AF264877.1|AF264877 Zea mays translational elongation factor EF-TuM gene, complete cds, nuclear gene for mitochondrial product Length = 5993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ccctggccgccgccgagcgc 546 |||||||||||||||||||| Sbjct: 3556 ccctggccgccgccgagcgc 3537
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gcaggccgacgacctcgcca 259 |||||||||||||||||||| Sbjct: 3498 gcaggccgacgacctcgcca 3517
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cgctcgacgcgctggtgcag 240 |||||||||||||||||||| Sbjct: 2832814 cgctcgacgcgctggtgcag 2832795
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 3676 tcgcgcccagcagccaccgc 3657
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 cgctcgacgcgctggtgcagcagg 244 |||||||||||||||||| ||||| Sbjct: 1996787 cgctcgacgcgctggtgcggcagg 1996810
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cctcgacggcgacgaggccaaggt 341 ||||||||||| |||||||||||| Sbjct: 6853424 cctcgacggcgccgaggccaaggt 6853447
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 gccccatcgccgacctgatcgacc 451 |||| ||||||||||||||||||| Sbjct: 4850042 gcccgatcgccgacctgatcgacc 4850065
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 151707 tcgcgcccagcagccaccgc 151688
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 23145 tcgcgcccagcagccaccgc 23164
>emb|X62569.1|SEERYABS S.erythraea eryA gene for 6-deoxyerythronolyde B synthase II & III Length = 20444 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cagcaggccgacgacctcgc 257 |||||||||||||||||||| Sbjct: 9330 cagcaggccgacgacctcgc 9311
>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0685B10 Length = 148544 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ccgcgccgaccgccccatcgccga 440 ||||||||||||| |||||||||| Sbjct: 105348 ccgcgccgaccgcaccatcgccga 105371
>gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, complete sequence Length = 93578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aagttcagccagtacaacca 515 |||||||||||||||||||| Sbjct: 28135 aagttcagccagtacaacca 28154
>dbj|AK110145.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-D11, full insert sequence Length = 3638 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tcgcgcccagcagccaccgc 132 |||||||||||||||||||| Sbjct: 3216 tcgcgcccagcagccaccgc 3235
>dbj|AK108256.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A09, full insert sequence Length = 1070 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ccgcgccgaccgccccatcgccga 440 ||||||||||||| |||||||||| Sbjct: 195 ccgcgccgaccgcaccatcgccga 218
>gb|AF136167.1|AF136167 Streptomyces coelicolor AbsR1 (absR1) and AbsR2 (absR2) genes, complete cds Length = 3919 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ctcgacggcgacgaggccaa 338 |||||||||||||||||||| Sbjct: 1095 ctcgacggcgacgaggccaa 1076
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 ccctggccgccgccgagcgc 546 |||||||||||||||||||| Sbjct: 5393699 ccctggccgccgccgagcgc 5393718
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ccgcgccgaccgccccatcgccga 440 ||||||||||||||||||| |||| Sbjct: 1185199 ccgcgccgaccgccccatccccga 1185222
>emb|BX005054.7| Zebrafish DNA sequence from clone DKEY-209N16 in linkage group 6, complete sequence Length = 230686 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 cagaaggaggtccagggcat 476 |||||||||||||||||||| Sbjct: 88701 cagaaggaggtccagggcat 88720
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gcgccgaccgccccatcgcc 438 |||||||||||||||||||| Sbjct: 1182063 gcgccgaccgccccatcgcc 1182082
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 agcaggccgacgacctcgcc 258 |||||||||||||||||||| Sbjct: 540558 agcaggccgacgacctcgcc 540577
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 acaaggtgggggacagcctg 309 |||||||||||||||||||| Sbjct: 3979538 acaaggtgggggacagcctg 3979557
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ccaaggtgcagcagcagaag 354 |||||||||||||||||||| Sbjct: 733150 ccaaggtgcagcagcagaag 733169
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tcctcgacggcgacgaggcc 336 |||||||||||||||||||| Sbjct: 352021 tcctcgacggcgacgaggcc 352040
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cacgctcgacgcgctggtgc 238 |||||||||||||||||||| Sbjct: 97059 cacgctcgacgcgctggtgc 97040
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ctcgacggcgacgaggccaa 338 |||||||||||||||||||| Sbjct: 1707 ctcgacggcgacgaggccaa 1688
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence Length = 220253 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 ctgcagaaggaggtccagggcatc 477 |||||||||||| ||||||||||| Sbjct: 165132 ctgcagaaggagatccagggcatc 165155
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 206 agttcaagattggcacgctcgacgcgctggtgcagc 241 |||||||||||||||| || || |||||||||||| Sbjct: 1165400 agttcaagattggcactctggagtcgctggtgcagc 1165365
>gb|L08071.1|STMSIGFACT Streptomyces griseus principal sigma factor (hrdB) gene, complete cds Length = 2127 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 atcctcgacggcgacgaggc 335 |||||||||||||||||||| Sbjct: 858 atcctcgacggcgacgaggc 877
>gb|M63677.1|SERERYAB S.erythraea second and third ORF's of eryA gene, complete cds Length = 20235 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cagcaggccgacgacctcgc 257 |||||||||||||||||||| Sbjct: 9303 cagcaggccgacgacctcgc 9284 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,078,992 Number of Sequences: 3902068 Number of extensions: 4078992 Number of successful extensions: 101469 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96124 Number of HSP's gapped (non-prelim): 5345 length of query: 546 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 523 effective length of database: 17,143,297,704 effective search space: 8965944699192 effective search space used: 8965944699192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
