ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart39a01 |
|---|---|
| Clone Library Name | barley_pub |
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +2 Query: 197 PPNPIHRHDRAESGAPKPSIVVGAAEPPGL*LPLYWVSSPFAVIPRDPRRNPPP 358 PP+P H + P+P++ PP LP P V+P P R P P Sbjct: 925 PPSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPPQP 978
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = +2 Query: 173 RGLTAISDPPNPIHRHDRAESGAPKPSIVVGAAEPPGL*LP 295 RGLT S PP P R E+G P P G P GL +P Sbjct: 2771 RGLTGSSGPPGP-----RGETGPPGPQGPPGPQGPNGLQIP 2806
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 412 GLAGILPPGEHHRRSDPTRGRVAPGVPWDHGKRG 311 GLAG+ PGE R DP PG+P D G+RG Sbjct: 634 GLAGL--PGEKGHRGDPGPSG-PPGIPGDDGERG 664
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = +2 Query: 275 PPGL*LPLYWVSSPFAVIPRDPRRNPPP 358 PPG LPL S V+PR P NPPP Sbjct: 1085 PPGHPLPLGLHDSARPVLPRPPISNPPP 1112
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = +2 Query: 197 PPNPIHRHDRAESGAPKPSIVVGAAEPPGL*LPLYWVSSPFAVIPRDPRR 346 PP+PIH H + AP + P LP +PFA IP D R Sbjct: 836 PPSPIHHHAGVQMSAPGNRTPIAKRYQP--ILPKASRPNPFANIPNDVNR 883
>NADE_MYCTU (P0A5L6) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 679 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/80 (22%), Positives = 37/80 (46%) Frame = +2 Query: 266 AAEPPGL*LPLYWVSSPFAVIPRDPRRNPPPCWIGASMMLTGRKNAGKASPYLLILISVG 445 A +PP + L F +P DP+R C+ ++ ++G + +A Y ++I V Sbjct: 309 ALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVS 368 Query: 446 CFFATYNFLTMVGHSRNGDG 505 + + L + H+ + +G Sbjct: 369 GGLDSTHALIVATHAMDREG 388
>NADE_MYCBO (P0A5L7) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 679 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/80 (22%), Positives = 37/80 (46%) Frame = +2 Query: 266 AAEPPGL*LPLYWVSSPFAVIPRDPRRNPPPCWIGASMMLTGRKNAGKASPYLLILISVG 445 A +PP + L F +P DP+R C+ ++ ++G + +A Y ++I V Sbjct: 309 ALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVS 368 Query: 446 CFFATYNFLTMVGHSRNGDG 505 + + L + H+ + +G Sbjct: 369 GGLDSTHALIVATHAMDREG 388
>MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum response| factor-like protein 2) (XMEF2) (RSRFR2) Length = 365 Score = 29.6 bits (65), Expect = 6.2 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = +2 Query: 194 DPPNPIHRHDRAESGAPKPSIVVGAAEPPGL-------*LPLYWVSSPFAVIPRDPRRNP 352 DP P R A P P +V GA PPG LP SPF P P+ P Sbjct: 122 DPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFR--PAAPKAGP 179 Query: 353 P 355 P Sbjct: 180 P 180
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 412 GLAGILPPGEHHRRSDPTRGRVAPGVPWDHGKRG 311 GLAG+ PGE R DP PG+P D G+RG Sbjct: 636 GLAGL--PGEKGHRGDPGPSG-PPGLPGDDGERG 666
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 412 GLAGILPPGEHHRRSDPTRGRVAPGVPWDHGKRG 311 GLAG+ PGE R DP PG+P D G+RG Sbjct: 636 GLAGL--PGEKGHRGDPGPSG-PPGLPGDDGERG 666
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +3 Query: 228 PNREPLNPQSSSAPPNHQASDSPFT--G*APLLP*SHGTPGATRPLVGS 368 P REPL+PQ S P SP G +PL P +PG T P S Sbjct: 778 PPREPLSPQGSRTP-------SPLVPPGSSPLPPRLSSSPGKTMPTTQS 819
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development| regulatory protein 1) (RAE-28) Length = 1012 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Frame = -3 Query: 559 RPGGDGTALIAAAEQFARPVPVSAVAHHCQEVVGXXXXXXXXXXEQVR--RGLAGILPPG 386 +P G A ++A +Q +PV V V RG+ G + PG Sbjct: 513 KPPQLGAAKMSATQQPPPHIPVQVVGTRQPGSAQAQALGLAQLAAAVPTPRGITGAVQPG 572 Query: 385 EHHRRSDPTRGRVAPG 338 + H S P + APG Sbjct: 573 QAHLASSPPSSQAAPG 588
>ZIC2_HUMAN (O95409) Zinc finger protein ZIC 2 (Zinc finger protein of the| cerebellum 2) Length = 532 Score = 29.3 bits (64), Expect = 8.1 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 418 RRGLAGILPPGEHHRRSDPTRGRVAPGVPWDHGKRGAHPV 299 + GL G G HH SD + PG+P HG G+ V Sbjct: 135 QHGLFGPGAGGLHHAHSDAQGHLLFPGLPEQHGPHGSQNV 174
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +2 Query: 173 RGLTAISDPPNPIHRH-DRAESGAPKPSIVVGAAEPPG 283 RGLT PP P + ++ E+G P PS GA PG Sbjct: 757 RGLTGPIGPPGPAGANGEKGEAGPPGPSGSTGARGAPG 794
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 29.3 bits (64), Expect = 8.1 Identities = 18/54 (33%), Positives = 19/54 (35%) Frame = +2 Query: 200 PNPIHRHDRAESGAPKPSIVVGAAEPPGL*LPLYWVSSPFAVIPRDPRRNPPPC 361 P I A P P +V A PG P V PR P PPPC Sbjct: 1066 PLTIRGPSSAGQSTPSPHLVPSPAPSPG----------PGPVPPRPPAAEPPPC 1109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,964,284 Number of Sequences: 219361 Number of extensions: 1371361 Number of successful extensions: 4270 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4260 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
