ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 145 2e-31
2gb|AC104710.2| Oryza sativa (japonica cultivar-group) chromosome... 145 2e-31
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AK069436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
5dbj|AK066148.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
6emb|AJ421798.1|SCA421798 Streptomyces cattleya thienamycin gene ... 46 0.12
7gb|AY109142.1| Zea mays PCO083751 mRNA sequence 46 0.12
8gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 44 0.49
9ref|XM_394770.2| PREDICTED: Apis mellifera similar to fork head ... 44 0.49
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.49
11ref|XM_864236.1| PREDICTED: Bos taurus similar to adenylate kina... 42 1.9
12gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.9
13emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete ch... 42 1.9
14gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell... 42 1.9
15ref|NM_139602.2| Drosophila melanogaster Ack CG14992-RA (Ack), mRNA 42 1.9
16gb|AF181642.1|AF181642 Drosophila melanogaster BcDNA.GH10777 (Bc... 42 1.9
17gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14... 42 1.9
18emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chr... 42 1.9
19gb|AC134792.9| Mus musculus chromosome 3, clone RP24-458L6, comp... 40 7.7
20gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.7
21gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 7.7
22gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosom... 40 7.7
23gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide comple... 40 7.7
24gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosom... 40 7.7
25gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome... 40 7.7
26gb|AC159281.3| Mus musculus BAC clone RP23-321H9 from chromosome... 40 7.7
27emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.7
28gb|AC158944.7| Mus musculus chromosome 5, clone RP23-260N17, com... 40 7.7
29gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Canc... 40 7.7
30gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.7
31dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.7
32gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, com... 40 7.7
33gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, comp... 40 7.7
34gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Can... 40 7.7
35gb|AC159233.2| Mus musculus BAC clone RP24-428L6 from chromosome... 40 7.7
36gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.7
37dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.7
38gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Can... 40 7.7
39emb|CR760301.2| Xenopus tropicalis finished cDNA, clone TNeu101h09 40 7.7
40gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.7
41gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.7
42emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.7
43gb|AC132420.5| Mus musculus BAC clone RP23-292P14 from 3, comple... 40 7.7
44gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, comple... 40 7.7
45gb|AF326972.1| Homo sapiens high-mobility group protein isoform ... 40 7.7
46gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis g... 40 7.7 
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0073E05, complete sequence
          Length = 178013

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                         
Query: 388   cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
             ||||||||||||||||||||||||||| ||||   ||||| ||||||||||||| |||||
Sbjct: 9994  cgggaggaagaatgccggcaaggcctcgccgtttctgctcctcctcatctcggtgggctg 10053

                                                          
Query: 448   cttcttcgcgacctacaacttcctgacaatggtgggccacagccg 492
             ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 10054 cttcttcgcgacctacaacttcctgacgatggtgggccacggccg 10098
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>gb|AC104710.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1286_E05,
             complete sequence
          Length = 106212

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                         
Query: 388   cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
             ||||||||||||||||||||||||||| ||||   ||||| ||||||||||||| |||||
Sbjct: 89465 cgggaggaagaatgccggcaaggcctcgccgtttctgctcctcctcatctcggtgggctg 89524

                                                          
Query: 448   cttcttcgcgacctacaacttcctgacaatggtgggccacagccg 492
             ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 89525 cttcttcgcgacctacaacttcctgacgatggtgggccacggccg 89569
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                            
Query: 388      cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
                ||||||||||||||||||||||||||| ||||   ||||| ||||||||||||| |||||
Sbjct: 18536879 cgggaggaagaatgccggcaaggcctcgccgtttctgctcctcctcatctcggtgggctg 18536938

                                                             
Query: 448      cttcttcgcgacctacaacttcctgacaatggtgggccacagccg 492
                ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 18536939 cttcttcgcgacctacaacttcctgacgatggtgggccacggccg 18536983
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>dbj|AK069436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023P13, full
           insert sequence
          Length = 1892

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                       
Query: 388 cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
           ||||||||||||||||||||||||||| ||||   ||||| ||||||||||||| |||||
Sbjct: 338 cgggaggaagaatgccggcaaggcctcgccgtttctgctcctcctcatctcggtgggctg 397

                                                        
Query: 448 cttcttcgcgacctacaacttcctgacaatggtgggccacagccg 492
           ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 398 cttcttcgcgacctacaacttcctgacgatggtgggccacggccg 442
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>dbj|AK066148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056D23, full
           insert sequence
          Length = 1938

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                       
Query: 388 cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
           ||||||||||||||||||||||||||| ||||   ||||| ||||||||||||| |||||
Sbjct: 361 cgggaggaagaatgccggcaaggcctcgccgtttctgctcctcctcatctcggtgggctg 420

                                                        
Query: 448 cttcttcgcgacctacaacttcctgacaatggtgggccacagccg 492
           ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 421 cttcttcgcgacctacaacttcctgacgatggtgggccacggccg 465
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>emb|AJ421798.1|SCA421798 Streptomyces cattleya thienamycin gene cluster
          Length = 32329

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 69   ccaccgggccggaggcggccggc 91
            |||||||||||||||||||||||
Sbjct: 5195 ccaccgggccggaggcggccggc 5217
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>gb|AY109142.1| Zea mays PCO083751 mRNA sequence
          Length = 747

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 388 cgggaggaagaatgccggcaaggcctctccgtacttgctcatcctcatctcggtcggctg 447
           ||||||||||||||| |||||||  || || |  |||||| |||||||||   | || ||
Sbjct: 210 cgggaggaagaatgcgggcaaggtttccccctggttgctcgtcctcatctgtttagggtg 269

                                      
Query: 448 cttcttcgcgacctacaacttcctgac 474
           |||||| | |||||||||| |||||||
Sbjct: 270 cttctttgtgacctacaacctcctgac 296



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 498 gggacgggccgcgcaaattgctcggcggcggcg 530
           |||| ||||||||||| || |||||||||||||
Sbjct: 314 gggatgggccgcgcaagttcctcggcggcggcg 346
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 518     ctcggcggcggcgatcagggcg 539
               ||||||||||||||||||||||
Sbjct: 2784335 ctcggcggcggcgatcagggcg 2784356
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>ref|XM_394770.2| PREDICTED: Apis mellifera similar to fork head orthologue
           (LOC411296), mRNA
          Length = 1473

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 44  gcgctcttcgcggccgccgccg 65
           ||||||||||||||||||||||
Sbjct: 821 gcgctcttcgcggccgccgccg 800
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 521     ggcggcggcgatcagggcggtg 542
               ||||||||||||||||||||||
Sbjct: 7429176 ggcggcggcgatcagggcggtg 7429197
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>ref|XM_864236.1| PREDICTED: Bos taurus similar to adenylate kinase 5 isoform 1
           (LOC613448), partial mRNA
          Length = 1126

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 425 ctcatcctcatctcggtcggc 445
           |||||||||||||||||||||
Sbjct: 985 ctcatcctcatctcggtcggc 965
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 519     tcggcggcggcgatcagggcg 539
               |||||||||||||||||||||
Sbjct: 2874082 tcggcggcggcgatcagggcg 2874062



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     ccgccgaaccaccaggcctc 286
               ||||||||||||||||||||
Sbjct: 3642437 ccgccgaaccaccaggcctc 3642456
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>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 517    gctcggcggcggcgatcagggcggtgccg 545
              |||||||||||| ||| ||||||||||||
Sbjct: 132371 gctcggcggcggggatgagggcggtgccg 132399
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>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     caccaccactcctttgtgctt 28
             |||||||||||||||||||||
Sbjct: 18488 caccaccactcctttgtgctt 18468
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>ref|NM_139602.2| Drosophila melanogaster Ack CG14992-RA (Ack), mRNA
          Length = 4378

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    caccaccactcctttgtgctt 28
            |||||||||||||||||||||
Sbjct: 2381 caccaccactcctttgtgctt 2361
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>gb|AF181642.1|AF181642 Drosophila melanogaster BcDNA.GH10777 (BcDNA.GH10777) mRNA, complete
            cds
          Length = 4392

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    caccaccactcctttgtgctt 28
            |||||||||||||||||||||
Sbjct: 2381 caccaccactcctttgtgctt 2361
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>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete
              sequence
          Length = 311933

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 8      caccaccactcctttgtgctt 28
              |||||||||||||||||||||
Sbjct: 116286 caccaccactcctttgtgctt 116266
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>emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chromosome 4, complete
             sequence
          Length = 206709

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    cactccctcattccctccctt 119
             |||||||||||||||||||||
Sbjct: 99269 cactccctcattccctccctt 99289
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>gb|AC134792.9| Mus musculus chromosome 3, clone RP24-458L6, complete sequence
          Length = 166417

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     cagtcactccctcattccctccct 118
              ||||||||||| ||||||||||||
Sbjct: 132922 cagtcactcccccattccctccct 132945
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 519     tcggcggcggcgatcagggc 538
               ||||||||||||||||||||
Sbjct: 1268093 tcggcggcggcgatcagggc 1268112
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 515    ttgctcggcggcggcgatcagggc 538
              ||||||| ||||||||||||||||
Sbjct: 927882 ttgctcgacggcggcgatcagggc 927859
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>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete sequence
          Length = 152811

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctccctcattccctcccttc 120
              ||||||||||||||||||||
Sbjct: 126498 ctccctcattccctcccttc 126517
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>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene
             cluster, complete sequence
          Length = 138203

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   cggcggcggcgatcagggcg 539
             ||||||||||||||||||||
Sbjct: 62422 cggcggcggcgatcagggcg 62441
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>gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosome 12, complete sequence
          Length = 178291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctccctcattccctcccttc 120
              ||||||||||||||||||||
Sbjct: 159955 ctccctcattccctcccttc 159974
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>gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome 12, complete sequence
          Length = 183707

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    ctccctcattccctcccttc 120
              ||||||||||||||||||||
Sbjct: 167739 ctccctcattccctcccttc 167720
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>gb|AC159281.3| Mus musculus BAC clone RP23-321H9 from chromosome 3, complete sequence
          Length = 229114

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ctccctcattccctcccttc 120
             ||||||||||||||||||||
Sbjct: 94118 ctccctcattccctcccttc 94137
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 519     tcggcggcggcgatcagggc 538
               ||||||||||||||||||||
Sbjct: 2584116 tcggcggcggcgatcagggc 2584135
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>gb|AC158944.7| Mus musculus chromosome 5, clone RP23-260N17, complete sequence
          Length = 161487

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  ctccctcattccctcccttc 120
            ||||||||||||||||||||
Sbjct: 2745 ctccctcattccctcccttc 2726
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>gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205657

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctccctcattccctcccttc 120
              ||||||||||||||||||||
Sbjct: 152850 ctccctcattccctcccttc 152869
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 520     cggcggcggcgatcagggcg 539
               ||||||||||||||||||||
Sbjct: 4980742 cggcggcggcgatcagggcg 4980723
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 519     tcggcggcggcgatcagggcggtg 542
               ||||||||||||||| ||||||||
Sbjct: 3889821 tcggcggcggcgatcggggcggtg 3889798
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>gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, complete sequence
          Length = 237627

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ctccctcattccctcccttc 120
             ||||||||||||||||||||
Sbjct: 38272 ctccctcattccctcccttc 38291
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>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    cagtcactccctcattccctccct 118
             ||||||||| ||||||||||||||
Sbjct: 32274 cagtcactcactcattccctccct 32251
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>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167238

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    cagtcactccctcattccctccct 118
             ||||||||| ||||||||||||||
Sbjct: 32268 cagtcactcactcattccctccct 32245
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>gb|AC159233.2| Mus musculus BAC clone RP24-428L6 from chromosome 12, complete sequence
          Length = 142100

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ctccctcattccctcccttc 120
             ||||||||||||||||||||
Sbjct: 62382 ctccctcattccctcccttc 62363
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 519    tcggcggcggcgatcagggc 538
              ||||||||||||||||||||
Sbjct: 178829 tcggcggcggcgatcagggc 178810
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     aagaatgccggcaaggcctc 414
               ||||||||||||||||||||
Sbjct: 4150987 aagaatgccggcaaggcctc 4151006
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>gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178755

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    cagtcactccctcattccctccct 118
             |||||| |||||||||||||||||
Sbjct: 64790 cagtcattccctcattccctccct 64767
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>emb|CR760301.2| Xenopus tropicalis finished cDNA, clone TNeu101h09
          Length = 1639

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 agcccctaaaccctcaatcg 257
           ||||||||||||||||||||
Sbjct: 62  agcccctaaaccctcaatcg 43
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 519     tcggcggcggcgatcagggcggtg 542
               ||||||||||||||| ||||||||
Sbjct: 3890495 tcggcggcggcgatcggggcggtg 3890472
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 519    tcggcggcggcgatcagggc 538
              ||||||||||||||||||||
Sbjct: 559987 tcggcggcggcgatcagggc 559968
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 70      caccgggccggaggcggccggcga 93
               |||||||||||||| |||||||||
Sbjct: 1196354 caccgggccggagggggccggcga 1196377
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>gb|AC132420.5| Mus musculus BAC clone RP23-292P14 from 3, complete sequence
          Length = 155821

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ctccctcattccctcccttc 120
             ||||||||||||||||||||
Sbjct: 63124 ctccctcattccctcccttc 63143
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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctccctcattccctcccttc 120
              ||||||||||||||||||||
Sbjct: 107810 ctccctcattccctcccttc 107829
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>gb|AF326972.1| Homo sapiens high-mobility group protein isoform C (HMGIC) gene, intron
             3 and partial cds
          Length = 112930

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    cagtcactccctcattccctccct 118
             |||||| |||||||||||||||||
Sbjct: 79023 cagtcattccctcattccctccct 79000
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>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete
             sequence
          Length = 36905

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccgggccggaggcggccggc 91
             ||||||||||||||||||||
Sbjct: 19030 ccgggccggaggcggccggc 19011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,910,003
Number of Sequences: 3902068
Number of extensions: 3910003
Number of successful extensions: 80234
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78132
Number of HSP's gapped (non-prelim): 2102
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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