ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERG1_ASHGO (Q75F69) Squalene monooxygenase (EC 1.14.99.7) (Squal... 29 6.7
2DBP7_KLULA (Q6CK32) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-) 29 8.7

>ERG1_ASHGO (Q75F69) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 497

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 207 EEEEQRHGCPGHPHGRFLDSCGALC 133
           EE+E+ HG  G  HGRFL +  A+C
Sbjct: 139 EEDEREHGV-GFVHGRFLQNLRAIC 162



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>DBP7_KLULA (Q6CK32) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-)|
          Length = 740

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 349 HYLRGSMAAIYSLLRHASCPESLFFHFLAAAPGDGELRAALG 474
           HY  GS + +   +   SC +S+ FH+   +  DG  R  +G
Sbjct: 419 HYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVG 460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,630,316
Number of Sequences: 219361
Number of extensions: 667331
Number of successful extensions: 1984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1984
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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