ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protei... 50 0.008
2ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (... 48 0.030
3gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, com... 44 0.47
4gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.9
5gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 7.3
6gb|AY528355.1| Eurycea tynerensis voucher UTA_56382 cytochrome b... 40 7.3
7gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, co... 40 7.3
8ref|NM_190214.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
9ref|XM_423281.1| PREDICTED: Gallus gallus similar to speckle-typ... 40 7.3
10ref|XM_757494.1| Ustilago maydis 521 hypothetical protein (UM064... 40 7.3
11gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter... 40 7.3
12gb|AC023235.24| Homo sapiens 3 BAC RP11-484D18 (Roswell Park Can... 40 7.3
13emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425... 40 7.3
14gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding prote... 40 7.3
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
16gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park C... 40 7.3
17gb|AC007539.8| Homo sapiens 12 BAC RCPI11-935C2 (Roswell Park Ca... 40 7.3
18gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, comp... 40 7.3
19gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 o... 40 7.3
20dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
21dbj|AK104708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
22dbj|AK070087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
23gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complet... 40 7.3

>gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protein mRNA, complete cds
          Length = 778

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 311 ctccagcaccgagtcctcctcctcc 335
           |||||||||||||||||||||||||
Sbjct: 299 ctccagcaccgagtcctcctcctcc 275



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>ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (MG07293.4) partial
           mRNA
          Length = 1368

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 187 cctccacatctacatccacctcca 210
           ||||||||||||||||||||||||
Sbjct: 161 cctccacatctacatccacctcca 184



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>gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, complete sequence
          Length = 158608

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 299    caacctcaggccctccagcacc 320
              ||||||||||||||||||||||
Sbjct: 111643 caacctcaggccctccagcacc 111622



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 350     ccgggcgaggtcagtgccgag 370
               |||||||||||||||||||||
Sbjct: 2101766 ccgggcgaggtcagtgccgag 2101786



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>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete
             sequence
          Length = 132371

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   cctccagcaccgagtcctcctcct 333
             ||||||||||||| ||||||||||
Sbjct: 53874 cctccagcaccgactcctcctcct 53897



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   cctccagcaccgagtcctcctcct 333
             ||||||||||||| ||||||||||
Sbjct: 52821 cctccagcaccgactcctcctcct 52844



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>gb|AY528355.1| Eurycea tynerensis voucher UTA_56382 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 1118

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 agcaccgagtcctcctcctccggc 338
           ||||||||| ||||||||||||||
Sbjct: 915 agcaccgaggcctcctcctccggc 938



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>gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, complete sequence
          Length = 163874

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    caacctcaggccctccagca 318
              ||||||||||||||||||||
Sbjct: 153414 caacctcaggccctccagca 153395



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>ref|NM_190214.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 cctccacatctacatccacctcca 210
           |||||||||| |||||||||||||
Sbjct: 202 cctccacatccacatccacctcca 179



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>ref|XM_423281.1| PREDICTED: Gallus gallus similar to speckle-type POZ protein
           (LOC425528), mRNA
          Length = 1127

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 319 ccgagtcctcctcctccggc 338
           ||||||||||||||||||||
Sbjct: 227 ccgagtcctcctcctccggc 246



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>ref|XM_757494.1| Ustilago maydis 521 hypothetical protein (UM06440.1) partial mRNA
          Length = 1710

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 185 cacctccacatctacatccacctccagc 212
           |||||||| ||||||||||||| |||||
Sbjct: 615 cacctccagatctacatccaccaccagc 642



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>gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter NaPi-IIb1 mRNA,
           partial cds
          Length = 871

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 270 agcagggacagggccaccaggatg 293
           |||||||||||||||| |||||||
Sbjct: 534 agcagggacagggccagcaggatg 511



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>gb|AC023235.24| Homo sapiens 3 BAC RP11-484D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169633

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    ataaaatgtgggccggccatggtg 67
             |||||||||||||||| |||||||
Sbjct: 24055 ataaaatgtgggccgggcatggtg 24078



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>emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425M5 on chromosome 20 Contains the
              GLRXP gene for glutaredoxin (thioltransferase) pseudogene,
              the PPIAP3 gene for peptidylprolyl isomerase A (cyclophilin
              A) pseudogene 3, the NNAT gene for neuronatin, the BLCAP
              gene for bladder cancer 10 kD protein BC10, a novel gene
              and three CpG islands, complete sequence
          Length = 194433

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    agggacagggccaccaggatggca 296
              |||||||||||||||||| |||||
Sbjct: 156107 agggacagggccaccaggctggca 156130



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>gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding protein kinase mRNA,
            complete cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 516  gcaagccatcctcaaagccg 535
            ||||||||||||||||||||
Sbjct: 1034 gcaagccatcctcaaagccg 1053



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      cctccacatctacatccacctcca 210
                |||||||||| |||||||||||||
Sbjct: 38681089 cctccacatccacatccacctcca 38681112



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>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 202478

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     aatgtgggccggccatggtg 67
              ||||||||||||||||||||
Sbjct: 184527 aatgtgggccggccatggtg 184546



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>gb|AC007539.8| Homo sapiens 12 BAC RCPI11-935C2 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177147

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aatgtgggccggccatggtg 67
             ||||||||||||||||||||
Sbjct: 59453 aatgtgggccggccatggtg 59472



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>gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, complete sequence
          Length = 149952

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    aaggagcctctcaaccccag 271
              ||||||||||||||||||||
Sbjct: 132613 aaggagcctctcaaccccag 132632



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>gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 of the complete
            genome
          Length = 11063

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 269  cagcagggacagggccaccaggat 292
            |||||||| |||||||||||||||
Sbjct: 1640 cagcagggccagggccaccaggat 1617



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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1099D03
          Length = 191022

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    cctccacatctacatccacctcca 210
              |||||||||| |||||||||||||
Sbjct: 139062 cctccacatccacatccacctcca 139085



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>dbj|AK104708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E07, full
           insert sequence
          Length = 1312

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 cctccacatctacatccacctcca 210
           |||||||||| |||||||||||||
Sbjct: 268 cctccacatccacatccacctcca 245



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>dbj|AK070087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J18, full
           insert sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 cctccacatctacatccacctcca 210
           |||||||||| |||||||||||||
Sbjct: 269 cctccacatccacatccacctcca 246



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>gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complete sequence
          Length = 177145

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    caacctcaggccctccagca 318
              ||||||||||||||||||||
Sbjct: 103546 caacctcaggccctccagca 103565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,571,714
Number of Sequences: 3902068
Number of extensions: 3571714
Number of successful extensions: 58309
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58216
Number of HSP's gapped (non-prelim): 93
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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