Clone Name | bart38h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protein mRNA, complete cds Length = 778 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 311 ctccagcaccgagtcctcctcctcc 335 ||||||||||||||||||||||||| Sbjct: 299 ctccagcaccgagtcctcctcctcc 275
>ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (MG07293.4) partial mRNA Length = 1368 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 187 cctccacatctacatccacctcca 210 |||||||||||||||||||||||| Sbjct: 161 cctccacatctacatccacctcca 184
>gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, complete sequence Length = 158608 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 caacctcaggccctccagcacc 320 |||||||||||||||||||||| Sbjct: 111643 caacctcaggccctccagcacc 111622
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ccgggcgaggtcagtgccgag 370 ||||||||||||||||||||| Sbjct: 2101766 ccgggcgaggtcagtgccgag 2101786
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence Length = 132371 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cctccagcaccgagtcctcctcct 333 ||||||||||||| |||||||||| Sbjct: 53874 cctccagcaccgactcctcctcct 53897 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cctccagcaccgagtcctcctcct 333 ||||||||||||| |||||||||| Sbjct: 52821 cctccagcaccgactcctcctcct 52844
>gb|AY528355.1| Eurycea tynerensis voucher UTA_56382 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1118 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 agcaccgagtcctcctcctccggc 338 ||||||||| |||||||||||||| Sbjct: 915 agcaccgaggcctcctcctccggc 938
>gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, complete sequence Length = 163874 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 caacctcaggccctccagca 318 |||||||||||||||||||| Sbjct: 153414 caacctcaggccctccagca 153395
>ref|NM_190214.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cctccacatctacatccacctcca 210 |||||||||| ||||||||||||| Sbjct: 202 cctccacatccacatccacctcca 179
>ref|XM_423281.1| PREDICTED: Gallus gallus similar to speckle-type POZ protein (LOC425528), mRNA Length = 1127 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgagtcctcctcctccggc 338 |||||||||||||||||||| Sbjct: 227 ccgagtcctcctcctccggc 246
>ref|XM_757494.1| Ustilago maydis 521 hypothetical protein (UM06440.1) partial mRNA Length = 1710 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 185 cacctccacatctacatccacctccagc 212 |||||||| ||||||||||||| ||||| Sbjct: 615 cacctccagatctacatccaccaccagc 642
>gb|AF297184.1| Oncorhynchus mykiss intestine Na/Pi cotransporter NaPi-IIb1 mRNA, partial cds Length = 871 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 agcagggacagggccaccaggatg 293 |||||||||||||||| ||||||| Sbjct: 534 agcagggacagggccagcaggatg 511
>gb|AC023235.24| Homo sapiens 3 BAC RP11-484D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169633 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ataaaatgtgggccggccatggtg 67 |||||||||||||||| ||||||| Sbjct: 24055 ataaaatgtgggccgggcatggtg 24078
>emb|AL109614.28|HSBA425M5 Human DNA sequence from clone RP11-425M5 on chromosome 20 Contains the GLRXP gene for glutaredoxin (thioltransferase) pseudogene, the PPIAP3 gene for peptidylprolyl isomerase A (cyclophilin A) pseudogene 3, the NNAT gene for neuronatin, the BLCAP gene for bladder cancer 10 kD protein BC10, a novel gene and three CpG islands, complete sequence Length = 194433 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 agggacagggccaccaggatggca 296 |||||||||||||||||| ||||| Sbjct: 156107 agggacagggccaccaggctggca 156130
>gb|AF214654.1| Arthrobotrys dactyloides calmodulin-binding protein kinase mRNA, complete cds Length = 1820 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 gcaagccatcctcaaagccg 535 |||||||||||||||||||| Sbjct: 1034 gcaagccatcctcaaagccg 1053
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 cctccacatctacatccacctcca 210 |||||||||| ||||||||||||| Sbjct: 38681089 cctccacatccacatccacctcca 38681112
>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202478 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aatgtgggccggccatggtg 67 |||||||||||||||||||| Sbjct: 184527 aatgtgggccggccatggtg 184546
>gb|AC007539.8| Homo sapiens 12 BAC RCPI11-935C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177147 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aatgtgggccggccatggtg 67 |||||||||||||||||||| Sbjct: 59453 aatgtgggccggccatggtg 59472
>gb|AC129882.3| Ornithorhynchus anatinus clone OA_Bb-265D21, complete sequence Length = 149952 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 aaggagcctctcaaccccag 271 |||||||||||||||||||| Sbjct: 132613 aaggagcctctcaaccccag 132632
>gb|AE004909.1| Pseudomonas aeruginosa PAO1, section 470 of 529 of the complete genome Length = 11063 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 cagcagggacagggccaccaggat 292 |||||||| ||||||||||||||| Sbjct: 1640 cagcagggccagggccaccaggat 1617
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 cctccacatctacatccacctcca 210 |||||||||| ||||||||||||| Sbjct: 139062 cctccacatccacatccacctcca 139085
>dbj|AK104708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E07, full insert sequence Length = 1312 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cctccacatctacatccacctcca 210 |||||||||| ||||||||||||| Sbjct: 268 cctccacatccacatccacctcca 245
>dbj|AK070087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J18, full insert sequence Length = 1353 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cctccacatctacatccacctcca 210 |||||||||| ||||||||||||| Sbjct: 269 cctccacatccacatccacctcca 246
>gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complete sequence Length = 177145 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 caacctcaggccctccagca 318 |||||||||||||||||||| Sbjct: 103546 caacctcaggccctccagca 103565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,571,714 Number of Sequences: 3902068 Number of extensions: 3571714 Number of successful extensions: 58309 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58216 Number of HSP's gapped (non-prelim): 93 length of query: 540 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 517 effective length of database: 17,143,297,704 effective search space: 8863084912968 effective search space used: 8863084912968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)