ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38h05 |
|---|---|
| Clone Library Name | barley_pub |
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +2 Query: 83 AEAGASPTANLAAPPRELQVHEDVGTF*EHS*EAHGQHHGYHR*QAP 223 A AG P A++AAPP Q AHGQH+G+H Q P Sbjct: 297 ARAGLQPRADMAAPPMPPQPPR-----------AHGQHYGHHHHQLP 332
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +2 Query: 83 AEAGASPTANLAAPPRELQVHEDVGTF*EHS*EAHGQHHGYHR*QAP 223 A AG P A++AAPP Q AHGQH+G+H Q P Sbjct: 298 ARAGLQPRADMAAPPMPPQPPR-----------AHGQHYGHHHHQLP 333
>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 33.1 bits (74), Expect = 0.60 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +2 Query: 83 AEAGASPTANLAAPPRELQVHEDVGTF*EHS*EAHGQHHGYHR*QAP 223 A AG P ++AAPP Q AHGQH+G+H Q P Sbjct: 298 ARAGLQPRVDMAAPPMPPQPPR-----------AHGQHYGHHHHQLP 333
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +2 Query: 83 AEAGASPTANLAAPPRELQVHEDVGTF*EHS*EAHGQHHGYHR*QAP 223 A AG P A++AAPP Q AHGQH+G+H Q P Sbjct: 298 ARAGLQPRADMAAPPTLPQPPC-----------AHGQHYGHHHHQLP 333
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Frame = +1 Query: 4 TPPNTP-----LARSLARTPPPAPRHRLDSGSGSRSLPDR*PRGPSSGAPST*RC--RNI 162 +PP T +AR R P P SGSRS P P P SG+P T + R + Sbjct: 550 SPPETAAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRL 609 Query: 163 LRAQLRS 183 + + LR+ Sbjct: 610 VGSSLRA 616
>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)| (TRF1-interacting ankyrin-related ADP-ribose polymerase) Length = 1327 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 4 TPPNTPLARSLARTPPPAPRH--RLDSGSGSRSLPDR*PRGP 123 T P +P A LA P +PRH L G GSR PDR PR P Sbjct: 43 TTPASPTASGLA--PFASPRHGLALPEGDGSRDPPDR-PRSP 81
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2160 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -2 Query: 406 NNTSADFPPPKTPWRVF*RPNILFFIFSETEPGSKRP 296 N+ +++ PPPKT W RP ETEPG P Sbjct: 379 NSPNSELPPPKTAWAETSRP-------PETEPGPPAP 408
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 234 SDNIMSNIMDTIADKLPKQKSGRFDPGSVSENMKNKMFGRQKTLHGVLG 380 S +S + DTI +L K+K FDP +V + M + R K + VLG Sbjct: 3053 SQQHISKVKDTIGSQLDKEKE-YFDPATVRQLMAQQELDRIKKANEVLG 3100
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 234 SDNIMSNIMDTIADKLPKQKSGRFDPGSVSENMKNKMFGRQKTLHGVLG 380 S +S + DTI +L K+K FDP +V + M + R K + VLG Sbjct: 3045 SQQHISKVKDTIGSQLDKEKE-YFDPATVRQLMAQQELDRIKKANEVLG 3092
>EZY1_CHLRE (Q08354) Ezy-1 protein precursor| Length = 453 Score = 30.0 bits (66), Expect = 5.1 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +3 Query: 213 DKLPKQKSDNIMSNIMDTIADKLPKQK---SGRFDPGSVSEN 329 DK+ +Q+ D +M ++D DK+P K +G+ +PG+ ++ Sbjct: 242 DKMARQELDRLMPFLLDDFLDKMPGLKAAFTGKAEPGAEGDD 283
>UPPP_STRMU (Q8CWZ1) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase) (Bacitracin resistance protein) Length = 281 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 405 LWRNKKISSSVLGLATVIWVFFEWLDYHFLTIISFALVL 521 LW K+ S L A + +F +WLD HF S AL+L Sbjct: 88 LWA--KVILSALPAAVIGLIFDDWLDAHFQNFFSVALML 124
>MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 4) (ERK-4) (MAP kinase isoform p63) (p63-MAPK) Length = 557 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = +1 Query: 1 ATPPNTPLARSLARTPPPAPRHR 69 A PP TP A L R PPP P R Sbjct: 507 ARPPTTPSAACLPRPPPPGPGGR 529
>GLND_VIBVY (Q7MIF8) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -2 Query: 529 TIPRTRANEMIVKKW*SSHSKKTQITVARPRTLEDIFLFLHNNTSADFPPPKT 371 T P NE ++ ++K + ARP T+ D+FL + N+++ D P T Sbjct: 327 TEPAVIINEDFQRRGRLIEARKPALFQARPETILDMFLHIANDSTIDSVSPPT 379
>GLND_VIBVU (Q8DBG3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 873 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -2 Query: 529 TIPRTRANEMIVKKW*SSHSKKTQITVARPRTLEDIFLFLHNNTSADFPPPKT 371 T P NE ++ ++K + ARP T+ D+FL + N+++ D P T Sbjct: 327 TEPAVIINEDFQRRGRLIEARKPALFQARPETILDMFLHIANDSTIDSVSPPT 379
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 29.3 bits (64), Expect = 8.7 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = +1 Query: 25 ARSLARTPPPAPRHRLDSGSGSRSLPDR*PRGPSSGAPST*RCRNILRAQLRSS 186 +RS + +PPP PRHR SG SR DR S P RC + +S Sbjct: 61 SRSSSESPPPEPRHR--SGRSSR---DRERMHKSREHPQASRCIGVFGLNTNTS 109
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 29.3 bits (64), Expect = 8.7 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Frame = +1 Query: 1 ATPPNTPLARSLARTPP-------PAPRHRLDSGSGSRSLPDR*PRGPSSGAPS 141 A+P TP S ARTPP P P+ S +R+ P R G SS A S Sbjct: 32 ASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSRSSSGRSSSARS 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,240,343 Number of Sequences: 219361 Number of extensions: 1810166 Number of successful extensions: 6358 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6325 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
