ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192253.1| Oryza sativa (japonica cultivar-group), predic... 420 e-114
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 258 2e-65
3dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 258 2e-65
4dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 258 2e-65
5ref|XM_475941.1| Oryza sativa (japonica cultivar-group), predic... 163 7e-37
6dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
7gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
8gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
10gb|BT017971.1| Zea mays clone EL01N0524B08.c mRNA sequence 42 1.9
11gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 1.9
12dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.9
13ref|NM_188540.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
14gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.3
15emb|AL662915.5| Human DNA sequence from clone RP11-350M10 on chr... 40 7.3
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.3
17gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete... 40 7.3
18dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
19dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
20dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
21dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 40 7.3
22dbj|AK109689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
24emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.3
25gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete... 40 7.3

>ref|NM_192253.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1140

 Score =  420 bits (212), Expect = e-114
 Identities = 311/344 (90%)
 Strand = Plus / Plus

                                                                       
Query: 184 gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243
           |||||||||||| || | ||||||||||   |||||||||| ||||||||||| ||||| 
Sbjct: 133 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 192

                                                                       
Query: 244 accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303
           || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| |||
Sbjct: 193 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 252

                                                                       
Query: 304 acagtgcgcctcgccctggagacacaagaggacctggataagctgagggagatggagatg 363
           || |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 253 accgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggagatggagatg 312

                                                                       
Query: 364 ttcggggaggacggccgggacggggtgtggacggtgatggcgaacgttatggaacccgag 423
           ||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||
Sbjct: 313 ttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgag 372

                                                                       
Query: 424 agcctgcaccgggcgttcgacggctgtgccggcgtcttccacacatcggcgttcgtggat 483
           ||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||||
Sbjct: 373 agcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggat 432

                                                       
Query: 484 cccgggggcatgtccggctacacgaaacatatggctagcttgga 527
           || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 433 ccggggggcatgtccggctacacgaaacatatggcaagcttgga 476



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                             
Query: 77  ggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgctg 126
           |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 14  ggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctg 63



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  258 bits (130), Expect = 2e-65
 Identities = 166/178 (93%)
 Strand = Plus / Minus

                                                                            
Query: 330      agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
                |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 25638440 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 25638381

                                                                            
Query: 390      gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
                ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||
Sbjct: 25638380 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 25638321

                                                                          
Query: 450      tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
                 |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 25638320 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 25638263



 Score =  135 bits (68), Expect = 2e-28
 Identities = 128/148 (86%)
 Strand = Plus / Minus

                                                                            
Query: 184      gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243
                |||||||||||| || | ||||||||||   |||||||||| ||||||||||| ||||| 
Sbjct: 25640848 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 25640789

                                                                            
Query: 244      accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303
                || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| |||
Sbjct: 25640788 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 25640729

                                            
Query: 304      acagtgcgcctcgccctggagacacaag 331
                || |||||||||||||| ||||| ||||
Sbjct: 25640728 accgtgcgcctcgccctcgagacccaag 25640701



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                            
Query: 55       ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114
                |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 25640989 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 25640930

                            
Query: 115      cgcgccgcgctg 126
                || || ||||||
Sbjct: 25640929 cgggcggcgctg 25640918



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     cggcggcgacgaaagcgcgg 220
               ||||||||||||||||||||
Sbjct: 6862717 cggcggcgacgaaagcgcgg 6862736



to top

>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score =  258 bits (130), Expect = 2e-65
 Identities = 166/178 (93%)
 Strand = Plus / Minus

                                                                         
Query: 330   agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
             |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 85246 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 85187

                                                                         
Query: 390   gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
             ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||
Sbjct: 85186 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 85127

                                                                       
Query: 450   tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
              |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 85126 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 85069



 Score =  135 bits (68), Expect = 2e-28
 Identities = 128/148 (86%)
 Strand = Plus / Minus

                                                                         
Query: 184   gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243
             |||||||||||| || | ||||||||||   |||||||||| ||||||||||| ||||| 
Sbjct: 87654 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 87595

                                                                         
Query: 244   accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303
             || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| |||
Sbjct: 87594 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 87535

                                         
Query: 304   acagtgcgcctcgccctggagacacaag 331
             || |||||||||||||| ||||| ||||
Sbjct: 87534 accgtgcgcctcgccctcgagacccaag 87507



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                         
Query: 55    ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114
             |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 87795 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 87736

                         
Query: 115   cgcgccgcgctg 126
             || || ||||||
Sbjct: 87735 cgggcggcgctg 87724



to top

>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score =  258 bits (130), Expect = 2e-65
 Identities = 166/178 (93%)
 Strand = Plus / Minus

                                                                          
Query: 330    agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
              |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 166043 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 165984

                                                                          
Query: 390    gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
              ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||
Sbjct: 165983 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 165924

                                                                        
Query: 450    tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
               |||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 165923 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 165866



 Score =  135 bits (68), Expect = 2e-28
 Identities = 128/148 (86%)
 Strand = Plus / Minus

                                                                          
Query: 184    gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243
              |||||||||||| || | ||||||||||   |||||||||| ||||||||||| ||||| 
Sbjct: 168451 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 168392

                                                                          
Query: 244    accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303
              || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| |||
Sbjct: 168391 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 168332

                                          
Query: 304    acagtgcgcctcgccctggagacacaag 331
              || |||||||||||||| ||||| ||||
Sbjct: 168331 accgtgcgcctcgccctcgagacccaag 168304



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                          
Query: 55     ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114
              |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 168592 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 168533

                          
Query: 115    cgcgccgcgctg 126
              || || ||||||
Sbjct: 168532 cgggcggcgctg 168521



to top

>ref|XM_475941.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1140

 Score =  163 bits (82), Expect = 7e-37
 Identities = 238/290 (82%)
 Strand = Plus / Plus

                                                                       
Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288
           |||||||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||||
Sbjct: 157 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 216

                                                                       
Query: 289 ctccgccacggttacacagtgcgcctcgccctggagacacaagaggacctggataagctg 348
           ||||| ||||| ||| | ||  | |||||||| ||||| |||||||| ||||| ||||||
Sbjct: 217 ctccggcacggctacgccgtcaggctcgccctcgagacgcaagaggatctggacaagctg 276

                                                                       
Query: 349 agggagatggagatgttcggggaggacggccgggacggggtgtggacggtgatggcgaac 408
            | |||||||||||||| || ||| ||||| ||||||| || ||||| |||||||| || 
Sbjct: 277 cgagagatggagatgtttggtgagaacggcagggacggtgtctggaccgtgatggcaaat 336

                                                                       
Query: 409 gttatggaacccgagagcctgcaccgggcgttcgacggctgtgccggcgtcttccacaca 468
           || ||||| || |||||| || |||  || ||| | || ||||  || ||||||||||||
Sbjct: 337 gtaatggacccagagagcttgaaccaagcattcaatggttgtgttggtgtcttccacaca 396

                                                             
Query: 469 tcggcgttcgtggatcccgggggcatgtccggctacacgaaacatatggc 518
           ||  |  || | ||||| |||||||| || |||||||||||||| |||||
Sbjct: 397 tcatccctcattgatccagggggcatctctggctacacgaaacacatggc 446



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 76  cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13  cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 62



to top

>dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H01, full
           insert sequence
          Length = 1424

 Score =  139 bits (70), Expect = 1e-29
 Identities = 235/290 (81%)
 Strand = Plus / Plus

                                                                       
Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288
           |||||||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||||
Sbjct: 310 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 369

                                                                       
Query: 289 ctccgccacggttacacagtgcgcctcgccctggagacacaagaggacctggataagctg 348
           ||||| || || ||| | ||  | |||| ||| ||||| |||||||| ||||| ||||||
Sbjct: 370 ctccggcatggctacgccgtcaggctcgtcctcgagacgcaagaggatctggacaagctg 429

                                                                       
Query: 349 agggagatggagatgttcggggaggacggccgggacggggtgtggacggtgatggcgaac 408
            | |||||||||||||| || ||| ||||| ||||||| || ||||| |||||||| || 
Sbjct: 430 cgagagatggagatgtttggtgagaacggcagggacggtgtctggaccgtgatggcaaat 489

                                                                       
Query: 409 gttatggaacccgagagcctgcaccgggcgttcgacggctgtgccggcgtcttccacaca 468
           || ||||| || |||||| || |||  || ||| | || ||||  || ||||||||| ||
Sbjct: 490 gtaatggacccagagagcttgaaccaagcattcaatggttgtgttggtgtcttccacgca 549

                                                             
Query: 469 tcggcgttcgtggatcccgggggcatgtccggctacacgaaacatatggc 518
           ||  |  || | ||||| |||||||| || |||||||||||||| |||||
Sbjct: 550 tcatccctcattgatccagggggcatctctggctacacgaaacacatggc 599



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 76  cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 166 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 215



to top

>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0017N18, complete sequence
          Length = 156643

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                              
Query: 76   cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125
            |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3097 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 3146



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                        
Query: 229  cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288
            |||||||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||||
Sbjct: 3241 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 3300

                       
Query: 289  ctccgccacgg 299
            ||||| |||||
Sbjct: 3301 ctccggcacgg 3311



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 142/178 (79%)
 Strand = Plus / Plus

                                                                        
Query: 330  agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
            |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| ||
Sbjct: 5136 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 5195

                                                                        
Query: 390  gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
             ||||| |||||||| || || ||||| || |||||| || |||  || ||| | || ||
Sbjct: 5196 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 5255

                                                                      
Query: 450  tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
            ||  || ||||||||||||||  |  || | ||||| |||||||| || |||||||||
Sbjct: 5256 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 5313



to top

>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
              complete sequence
          Length = 127304

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                                
Query: 76     cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125
              |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 102998 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 103047



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                          
Query: 229    cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288
              |||||||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||||
Sbjct: 103142 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 103201

                         
Query: 289    ctccgccacgg 299
              ||||| |||||
Sbjct: 103202 ctccggcacgg 103212



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 142/178 (79%)
 Strand = Plus / Plus

                                                                          
Query: 330    agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
              |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| ||
Sbjct: 105037 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 105096

                                                                          
Query: 390    gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
               ||||| |||||||| || || ||||| || |||||| || |||  || ||| | || ||
Sbjct: 105097 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 105156

                                                                        
Query: 450    tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
              ||  || ||||||||||||||  |  || | ||||| |||||||| || |||||||||
Sbjct: 105157 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 105214



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                                  
Query: 76       cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125
                |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 28575305 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 28575354



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 229      cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288
                |||||||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||||
Sbjct: 28575449 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 28575508

                           
Query: 289      ctccgccacgg 299
                ||||| |||||
Sbjct: 28575509 ctccggcacgg 28575519



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 142/178 (79%)
 Strand = Plus / Plus

                                                                            
Query: 330      agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389
                |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| ||
Sbjct: 28577344 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 28577403

                                                                            
Query: 390      gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449
                 ||||| |||||||| || || ||||| || |||||| || |||  || ||| | || ||
Sbjct: 28577404 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 28577463

                                                                          
Query: 450      tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507
                ||  || ||||||||||||||  |  || | ||||| |||||||| || |||||||||
Sbjct: 28577464 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 28577521



to top

>gb|BT017971.1| Zea mays clone EL01N0524B08.c mRNA sequence
          Length = 1081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 273 catcgtcgaccgcctcctccgccac 297
           ||||| |||||||||||||||||||
Sbjct: 750 catcgccgaccgcctcctccgccac 774



to top

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 95      aggcggaggtggaggagatgcgcgc 119
               |||||||| ||||||||||||||||
Sbjct: 1757444 aggcggagctggaggagatgcgcgc 1757420



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 231     caccgtgtgcgtgaccggcgg 251
               |||||||||||||||||||||
Sbjct: 2140942 caccgtgtgcgtgaccggcgg 2140922



to top

>ref|NM_188540.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 cggcggcgacgaaagcgcgg 220
           ||||||||||||||||||||
Sbjct: 496 cggcggcgacgaaagcgcgg 477



to top

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 260     tcgtcggcttcgccatcgtcgacc 283
               |||||||||||||| |||||||||
Sbjct: 2680812 tcgtcggcttcgccgtcgtcgacc 2680789



to top

>emb|AL662915.5| Human DNA sequence from clone RP11-350M10 on chromosome 1, complete
             sequence
          Length = 55929

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ctgagggagatggagatgtt 365
             ||||||||||||||||||||
Sbjct: 38065 ctgagggagatggagatgtt 38084



to top

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     cgacgaaagcgcggcgggcc 226
               ||||||||||||||||||||
Sbjct: 5426197 cgacgaaagcgcggcgggcc 5426216



to top

>gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete sequence
          Length = 80650

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 368   gggaggacggccgggacggggtgt 391
             |||||| |||||||||||||||||
Sbjct: 73701 gggagggcggccgggacggggtgt 73724



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 250      gggatatccttcgtcggctt 269
                ||||||||||||||||||||
Sbjct: 18158657 gggatatccttcgtcggctt 18158676



to top

>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492F05
          Length = 159242

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   cggcggcgacgaaagcgcgg 220
             ||||||||||||||||||||
Sbjct: 30441 cggcggcgacgaaagcgcgg 30460



to top

>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0417G05
          Length = 147803

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    cggcggcgacgaaagcgcgg 220
              ||||||||||||||||||||
Sbjct: 144778 cggcggcgacgaaagcgcgg 144797



to top

>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 379    cgggacggggtgtggacggtgatg 402
              |||||||||||| |||||||||||
Sbjct: 182629 cgggacggggtggggacggtgatg 182652



to top

>dbj|AK109689.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E02, full
           insert sequence
          Length = 1483

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 gggatatccttcgtcggctt 269
           ||||||||||||||||||||
Sbjct: 604 gggatatccttcgtcggctt 623



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 250      gggatatccttcgtcggctt 269
                ||||||||||||||||||||
Sbjct: 18084978 gggatatccttcgtcggctt 18084997



to top

>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    gggatatccttcgtcggctt 269
              ||||||||||||||||||||
Sbjct: 112335 gggatatccttcgtcggctt 112354



to top

>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence
          Length = 232605

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 379    cgggacggggtgtggacggtgatg 402
              |||||||||||| |||||||||||
Sbjct: 128957 cgggacggggtggggacggtgatg 128980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,936,497
Number of Sequences: 3902068
Number of extensions: 2936497
Number of successful extensions: 72953
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72367
Number of HSP's gapped (non-prelim): 580
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top