Clone Name | bart38g11 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192253.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 420 bits (212), Expect = e-114 Identities = 311/344 (90%) Strand = Plus / Plus Query: 184 gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243 |||||||||||| || | |||||||||| |||||||||| ||||||||||| ||||| Sbjct: 133 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 192 Query: 244 accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303 || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| ||| Sbjct: 193 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 252 Query: 304 acagtgcgcctcgccctggagacacaagaggacctggataagctgagggagatggagatg 363 || |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 253 accgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggagatggagatg 312 Query: 364 ttcggggaggacggccgggacggggtgtggacggtgatggcgaacgttatggaacccgag 423 ||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| |||||| Sbjct: 313 ttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgag 372 Query: 424 agcctgcaccgggcgttcgacggctgtgccggcgtcttccacacatcggcgttcgtggat 483 ||||||||||||||||||||||| || |||||||| || ||||| ||||||||||||||| Sbjct: 373 agcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggat 432 Query: 484 cccgggggcatgtccggctacacgaaacatatggctagcttgga 527 || |||||||||||||||||||||||||||||||| |||||||| Sbjct: 433 ccggggggcatgtccggctacacgaaacatatggcaagcttgga 476 Score = 83.8 bits (42), Expect = 5e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 77 ggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgctg 126 |||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 14 ggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctg 63
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 258 bits (130), Expect = 2e-65 Identities = 166/178 (93%) Strand = Plus / Minus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 25638440 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 25638381 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| || Sbjct: 25638380 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 25638321 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 25638320 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 25638263 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Minus Query: 184 gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243 |||||||||||| || | |||||||||| |||||||||| ||||||||||| ||||| Sbjct: 25640848 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 25640789 Query: 244 accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303 || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| ||| Sbjct: 25640788 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 25640729 Query: 304 acagtgcgcctcgccctggagacacaag 331 || |||||||||||||| ||||| |||| Sbjct: 25640728 accgtgcgcctcgccctcgagacccaag 25640701 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 55 ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114 |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct: 25640989 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 25640930 Query: 115 cgcgccgcgctg 126 || || |||||| Sbjct: 25640929 cgggcggcgctg 25640918 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggcggcgacgaaagcgcgg 220 |||||||||||||||||||| Sbjct: 6862717 cggcggcgacgaaagcgcgg 6862736
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 258 bits (130), Expect = 2e-65 Identities = 166/178 (93%) Strand = Plus / Minus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 85246 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 85187 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| || Sbjct: 85186 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 85127 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 85126 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 85069 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Minus Query: 184 gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243 |||||||||||| || | |||||||||| |||||||||| ||||||||||| ||||| Sbjct: 87654 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 87595 Query: 244 accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303 || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| ||| Sbjct: 87594 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 87535 Query: 304 acagtgcgcctcgccctggagacacaag 331 || |||||||||||||| ||||| |||| Sbjct: 87534 accgtgcgcctcgccctcgagacccaag 87507 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 55 ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114 |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct: 87795 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 87736 Query: 115 cgcgccgcgctg 126 || || |||||| Sbjct: 87735 cgggcggcgctg 87724
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 258 bits (130), Expect = 2e-65 Identities = 166/178 (93%) Strand = Plus / Minus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 166043 agaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgt 165984 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| || Sbjct: 165983 gtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatg 165924 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 165923 cgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacg 165866 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Minus Query: 184 gacgtcaagcgcgccaccggcggcgacgaaagcgcggcgggcccgcgcaccgtgtgcgtg 243 |||||||||||| || | |||||||||| |||||||||| ||||||||||| ||||| Sbjct: 168451 gacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtc 168392 Query: 244 accggcgggatatccttcgtcggcttcgccatcgtcgaccgcctcctccgccacggttac 303 || ||||| || ||||||||||| |||||| ||||||||||||| ||||| ||||| ||| Sbjct: 168391 acgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctac 168332 Query: 304 acagtgcgcctcgccctggagacacaag 331 || |||||||||||||| ||||| |||| Sbjct: 168331 accgtgcgcctcgccctcgagacccaag 168304 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 55 ggcggcgtcatgggcggcttacggagcacgcagagcatgcaggcggaggtggaggagatg 114 |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct: 168592 ggcggcgtcatgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatg 168533 Query: 115 cgcgccgcgctg 126 || || |||||| Sbjct: 168532 cgggcggcgctg 168521
>ref|XM_475941.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 163 bits (82), Expect = 7e-37 Identities = 238/290 (82%) Strand = Plus / Plus Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288 |||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 157 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 216 Query: 289 ctccgccacggttacacagtgcgcctcgccctggagacacaagaggacctggataagctg 348 ||||| ||||| ||| | || | |||||||| ||||| |||||||| ||||| |||||| Sbjct: 217 ctccggcacggctacgccgtcaggctcgccctcgagacgcaagaggatctggacaagctg 276 Query: 349 agggagatggagatgttcggggaggacggccgggacggggtgtggacggtgatggcgaac 408 | |||||||||||||| || ||| ||||| ||||||| || ||||| |||||||| || Sbjct: 277 cgagagatggagatgtttggtgagaacggcagggacggtgtctggaccgtgatggcaaat 336 Query: 409 gttatggaacccgagagcctgcaccgggcgttcgacggctgtgccggcgtcttccacaca 468 || ||||| || |||||| || ||| || ||| | || |||| || |||||||||||| Sbjct: 337 gtaatggacccagagagcttgaaccaagcattcaatggttgtgttggtgtcttccacaca 396 Query: 469 tcggcgttcgtggatcccgggggcatgtccggctacacgaaacatatggc 518 || | || | ||||| |||||||| || |||||||||||||| ||||| Sbjct: 397 tcatccctcattgatccagggggcatctctggctacacgaaacacatggc 446 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 76 cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 13 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 62
>dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H01, full insert sequence Length = 1424 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Plus Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288 |||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 310 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 369 Query: 289 ctccgccacggttacacagtgcgcctcgccctggagacacaagaggacctggataagctg 348 ||||| || || ||| | || | |||| ||| ||||| |||||||| ||||| |||||| Sbjct: 370 ctccggcatggctacgccgtcaggctcgtcctcgagacgcaagaggatctggacaagctg 429 Query: 349 agggagatggagatgttcggggaggacggccgggacggggtgtggacggtgatggcgaac 408 | |||||||||||||| || ||| ||||| ||||||| || ||||| |||||||| || Sbjct: 430 cgagagatggagatgtttggtgagaacggcagggacggtgtctggaccgtgatggcaaat 489 Query: 409 gttatggaacccgagagcctgcaccgggcgttcgacggctgtgccggcgtcttccacaca 468 || ||||| || |||||| || ||| || ||| | || |||| || ||||||||| || Sbjct: 490 gtaatggacccagagagcttgaaccaagcattcaatggttgtgttggtgtcttccacgca 549 Query: 469 tcggcgttcgtggatcccgggggcatgtccggctacacgaaacatatggc 518 || | || | ||||| |||||||| || |||||||||||||| ||||| Sbjct: 550 tcatccctcattgatccagggggcatctctggctacacgaaacacatggc 599 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 76 cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 166 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 215
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 76 cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3097 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 3146 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288 |||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 3241 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 3300 Query: 289 ctccgccacgg 299 ||||| ||||| Sbjct: 3301 ctccggcacgg 3311 Score = 67.9 bits (34), Expect = 3e-08 Identities = 142/178 (79%) Strand = Plus / Plus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| || Sbjct: 5136 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 5195 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||| |||||||| || || ||||| || |||||| || ||| || ||| | || || Sbjct: 5196 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 5255 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 || || |||||||||||||| | || | ||||| |||||||| || ||||||||| Sbjct: 5256 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 5313
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 76 cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 102998 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 103047 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288 |||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 103142 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 103201 Query: 289 ctccgccacgg 299 ||||| ||||| Sbjct: 103202 ctccggcacgg 103212 Score = 67.9 bits (34), Expect = 3e-08 Identities = 142/178 (79%) Strand = Plus / Plus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| || Sbjct: 105037 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 105096 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||| |||||||| || || ||||| || |||||| || ||| || ||| | || || Sbjct: 105097 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 105156 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 || || |||||||||||||| | || | ||||| |||||||| || ||||||||| Sbjct: 105157 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 105214
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 76 cggagcacgcagagcatgcaggcggaggtggaggagatgcgcgccgcgct 125 |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 28575305 cggagcacgcagagcatggaggcggaggtggaggagatgcgcgccgcgct 28575354 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 229 cgcaccgtgtgcgtgaccggcgggatatccttcgtcggcttcgccatcgtcgaccgcctc 288 |||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||| Sbjct: 28575449 cgcaccgtgtgcgtcaccggcgggatatcgttcgtggggctcgccgtcgtcgaccgcctc 28575508 Query: 289 ctccgccacgg 299 ||||| ||||| Sbjct: 28575509 ctccggcacgg 28575519 Score = 67.9 bits (34), Expect = 3e-08 Identities = 142/178 (79%) Strand = Plus / Plus Query: 330 agaggacctggataagctgagggagatggagatgttcggggaggacggccgggacggggt 389 |||||| ||||| |||||| | |||||||||||||| || ||| ||||| ||||||| || Sbjct: 28577344 agaggatctggacaagctgcgagagatggagatgtttggtgagaacggcagggacggtgt 28577403 Query: 390 gtggacggtgatggcgaacgttatggaacccgagagcctgcaccgggcgttcgacggctg 449 ||||| |||||||| || || ||||| || |||||| || ||| || ||| | || || Sbjct: 28577404 ctggaccgtgatggcaaatgtaatggacccagagagcttgaaccaagcattcaatggttg 28577463 Query: 450 tgccggcgtcttccacacatcggcgttcgtggatcccgggggcatgtccggctacacg 507 || || |||||||||||||| | || | ||||| |||||||| || ||||||||| Sbjct: 28577464 tgttggtgtcttccacacatcatccctcattgatccagggggcatctctggctacacg 28577521
>gb|BT017971.1| Zea mays clone EL01N0524B08.c mRNA sequence Length = 1081 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 catcgtcgaccgcctcctccgccac 297 ||||| ||||||||||||||||||| Sbjct: 750 catcgccgaccgcctcctccgccac 774
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 aggcggaggtggaggagatgcgcgc 119 |||||||| |||||||||||||||| Sbjct: 1757444 aggcggagctggaggagatgcgcgc 1757420
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 caccgtgtgcgtgaccggcgg 251 ||||||||||||||||||||| Sbjct: 2140942 caccgtgtgcgtgaccggcgg 2140922
>ref|NM_188540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cggcggcgacgaaagcgcgg 220 |||||||||||||||||||| Sbjct: 496 cggcggcgacgaaagcgcgg 477
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 tcgtcggcttcgccatcgtcgacc 283 |||||||||||||| ||||||||| Sbjct: 2680812 tcgtcggcttcgccgtcgtcgacc 2680789
>emb|AL662915.5| Human DNA sequence from clone RP11-350M10 on chromosome 1, complete sequence Length = 55929 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ctgagggagatggagatgtt 365 |||||||||||||||||||| Sbjct: 38065 ctgagggagatggagatgtt 38084
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cgacgaaagcgcggcgggcc 226 |||||||||||||||||||| Sbjct: 5426197 cgacgaaagcgcggcgggcc 5426216
>gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete sequence Length = 80650 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 gggaggacggccgggacggggtgt 391 |||||| ||||||||||||||||| Sbjct: 73701 gggagggcggccgggacggggtgt 73724
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gggatatccttcgtcggctt 269 |||||||||||||||||||| Sbjct: 18158657 gggatatccttcgtcggctt 18158676
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggcggcgacgaaagcgcgg 220 |||||||||||||||||||| Sbjct: 30441 cggcggcgacgaaagcgcgg 30460
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggcggcgacgaaagcgcgg 220 |||||||||||||||||||| Sbjct: 144778 cggcggcgacgaaagcgcgg 144797
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 cgggacggggtgtggacggtgatg 402 |||||||||||| ||||||||||| Sbjct: 182629 cgggacggggtggggacggtgatg 182652
>dbj|AK109689.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E02, full insert sequence Length = 1483 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gggatatccttcgtcggctt 269 |||||||||||||||||||| Sbjct: 604 gggatatccttcgtcggctt 623
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gggatatccttcgtcggctt 269 |||||||||||||||||||| Sbjct: 18084978 gggatatccttcgtcggctt 18084997
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gggatatccttcgtcggctt 269 |||||||||||||||||||| Sbjct: 112335 gggatatccttcgtcggctt 112354
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 cgggacggggtgtggacggtgatg 402 |||||||||||| ||||||||||| Sbjct: 128957 cgggacggggtggggacggtgatg 128980 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,936,497 Number of Sequences: 3902068 Number of extensions: 2936497 Number of successful extensions: 72953 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72367 Number of HSP's gapped (non-prelim): 580 length of query: 540 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 517 effective length of database: 17,143,297,704 effective search space: 8863084912968 effective search space used: 8863084912968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)