ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDTB_SCHPO (O14216) Hypothetical protein C6B12.11 in chromosome I 30 3.2
2HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expr... 30 5.5

>YDTB_SCHPO (O14216) Hypothetical protein C6B12.11 in chromosome I|
          Length = 337

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -2

Query: 183 INTNTSSTKIGSGTAVPTPLLLLPRPISTHTMVVSSTMPL*WRW*GY*TIEYMRVRAPC 7
           I  NTS     S T +PT     P P++ HT  V  T P  +R   Y +   +RV APC
Sbjct: 139 IKHNTSEI---SSTMIPTTPSKNPEPVAQHTPTVLET-PSSYRLQVYTSPNLLRVNAPC 193



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>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 271

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 156 IGSGTAVPTPLLLLPRPISTHTMVVSS 76
           +G G A PTP   LP P S+ T +VSS
Sbjct: 39  LGRGPAAPTPTPTLPSPNSSFTSLVSS 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,686,595
Number of Sequences: 219361
Number of extensions: 480548
Number of successful extensions: 1445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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