ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 5038235 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 5038176 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 5038175 tactgaaagca 5038165 Score = 63.9 bits (32), Expect = 5e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 275 tcaaccttctgatcgtaggcctgctgctagaggcgatcccagggcatcatcacaaacaaa 334 ||||| |||||||| |||||||||||| |||||| ||| ||| || |||||| || Sbjct: 5048401 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 5048342 Query: 335 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 394 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 5048341 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 5048282 Query: 395 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 438 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 5048281 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 5048238 Score = 46.1 bits (23), Expect = 0.12 Identities = 71/87 (81%) Strand = Plus / Minus Query: 364 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 423 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 5048180 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 5048121 Query: 424 ctggtcctgaaagcagcaaggatgatg 450 ||| || |||||| ||||||||||| Sbjct: 5048120 ctgactctcaaagcaacaaggatgatg 5048094
>dbj|AK064995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D20, full insert sequence Length = 2181 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 385 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 444 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 445 tactgaaagca 455 Score = 56.0 bits (28), Expect = 1e-04 Identities = 66/78 (84%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 67 ccggcgatcgacgcggcggcggg---cctcccggcaacggcgacaaccccgggggtggct 123 |||||||||| |||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct: 87 ccggcgatcgccgcggcggcggggggcctcccggctccggcgacgactccgggggtggtt 146 Query: 124 gggaaactattgaaaaga 141 |||| ||| |||| |||| Sbjct: 147 gggagactgttgagaaga 164
>dbj|AK064217.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F07, full insert sequence Length = 1556 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 385 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 444 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 445 tactgaaagca 455 Score = 56.0 bits (28), Expect = 1e-04 Identities = 66/78 (84%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 67 ccggcgatcgacgcggcggcggg---cctcccggcaacggcgacaaccccgggggtggct 123 |||||||||| |||||||||||| ||||||||| ||||||| || |||||||||| | Sbjct: 87 ccggcgatcgccgcggcggcggggggcctcccggctccggcgacgactccgggggtggtt 146 Query: 124 gggaaactattgaaaaga 141 |||| ||| |||| |||| Sbjct: 147 gggagactgttgagaaga 164
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 5038217 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 5038158 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 5038157 tactgaaagca 5038147 Score = 63.9 bits (32), Expect = 5e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 275 tcaaccttctgatcgtaggcctgctgctagaggcgatcccagggcatcatcacaaacaaa 334 ||||| |||||||| |||||||||||| |||||| ||| ||| || |||||| || Sbjct: 5048383 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 5048324 Query: 335 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 394 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 5048323 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 5048264 Query: 395 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 438 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 5048263 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 5048220 Score = 46.1 bits (23), Expect = 0.12 Identities = 71/87 (81%) Strand = Plus / Minus Query: 364 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 423 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 5048162 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 5048103 Query: 424 ctggtcctgaaagcagcaaggatgatg 450 ||| || |||||| ||||||||||| Sbjct: 5048102 ctgactctcaaagcaacaaggatgatg 5048076
>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91053 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 81609 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 81550 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 81549 tactgaaagca 81539
>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112231 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 368 agttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccatctgg 427 |||||||||| |||| |||||||||||||||||||||| | ||||| || ||||| |||| Sbjct: 8888 agttgtgactgcacctctggcaaatggttggcagtggggagccaggtcttgcccacctgg 8829 Query: 428 tcctgaaagca 438 | ||||||||| Sbjct: 8828 tactgaaagca 8818 Score = 63.9 bits (32), Expect = 5e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 275 tcaaccttctgatcgtaggcctgctgctagaggcgatcccagggcatcatcacaaacaaa 334 ||||| |||||||| |||||||||||| |||||| ||| ||| || |||||| || Sbjct: 19054 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 18995 Query: 335 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 394 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 18994 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 18935 Query: 395 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 438 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 18934 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 18891 Score = 46.1 bits (23), Expect = 0.12 Identities = 71/87 (81%) Strand = Plus / Minus Query: 364 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 423 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 18833 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 18774 Query: 424 ctggtcctgaaagcagcaaggatgatg 450 ||| || |||||| ||||||||||| Sbjct: 18773 ctgactctcaaagcaacaaggatgatg 18747
>dbj|AK100699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114M02, full insert sequence Length = 2570 Score = 63.9 bits (32), Expect = 5e-07 Identities = 131/164 (79%) Strand = Plus / Plus Query: 275 tcaaccttctgatcgtaggcctgctgctagaggcgatcccagggcatcatcacaaacaaa 334 ||||| |||||||| |||||||||||| |||||| ||| ||| || |||||| || Sbjct: 293 tcaacattctgatcataggcctgctgccagaggcagtcctaggtcactgccacaaaataa 352 Query: 335 gtctacagaaccagacttgcaagcaccaaacccagttgtgactccacccctggcaaatgg 394 | ||||||| || | ||||||||||| |||||||||||| |||| || |||||||| Sbjct: 353 gcatacagaaacaaaattgcaagcaccgtgtccagttgtgactgcacctcttgcaaatgg 412 Query: 395 ttggcagtgggcatccaggcctcgcccatctggtcctgaaagca 438 || |||||||| | ||| | ||||| |||||||| |||| |||| Sbjct: 413 tttgcagtgggtacccaagtctcgctcatctggttctgagagca 456 Score = 46.1 bits (23), Expect = 0.12 Identities = 71/87 (81%) Strand = Plus / Plus Query: 364 acccagttgtgactccacccctggcaaatggttggcagtgggcatccaggcctcgcccat 423 |||||||||||||| || | || |||||||| | |||||||| ||||| ||||| ||| Sbjct: 514 acccagttgtgactgcaactcttgcaaatggcttgcagtgggtgcccaggtctcgctcat 573 Query: 424 ctggtcctgaaagcagcaaggatgatg 450 ||| || |||||| ||||||||||| Sbjct: 574 ctgactctcaaagcaacaaggatgatg 600
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccggcgatcgacgcggcggc 86 ||||||||||||||||||||| Sbjct: 99362 tccggcgatcgacgcggcggc 99342
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tccggcgatcgacgcggcggc 86 ||||||||||||||||||||| Sbjct: 34481877 tccggcgatcgacgcggcggc 34481857
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 ccggcgatcgacgcggcggcg 87 ||||||||||||||||||||| Sbjct: 955363 ccggcgatcgacgcggcggcg 955383
>dbj|AK106615.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H10, full insert sequence Length = 1897 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tccggcgatcgacgcggcggc 86 ||||||||||||||||||||| Sbjct: 73 tccggcgatcgacgcggcggc 93
>emb|CR925781.6| Zebrafish DNA sequence from clone DKEY-3B23 in linkage group 10, complete sequence Length = 202134 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 ctggcaaatggttggcagtgg 404 ||||||||||||||||||||| Sbjct: 115940 ctggcaaatggttggcagtgg 115960
>ref|NM_193838.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 414 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gggcaccatggggttcatcc 197 |||||||||||||||||||| Sbjct: 168 gggcaccatggggttcatcc 149
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cggcggcgggcctcccggca 99 |||||||||||||||||||| Sbjct: 139309 cggcggcgggcctcccggca 139290
>gb|AC113323.12| Mus musculus chromosome 15, clone RP23-451O9, complete sequence Length = 175138 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aactattgaaaagaagaaga 147 |||||||||||||||||||| Sbjct: 55809 aactattgaaaagaagaaga 55790
>gb|AY619056.1| Daphnia pulicaria clone WFms0000046 microsatellite marker Dp45 sequence Length = 363 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 ggaaactattgaaaagaagaagaa 148 |||||| ||||||||||||||||| Sbjct: 255 ggaaacaattgaaaagaagaagaa 232
>gb|AC146423.3| Pan troglodytes BAC clone RP43-25L18 from 7, complete sequence Length = 158864 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 aataatcctgaagctgagga 499 |||||||||||||||||||| Sbjct: 40381 aataatcctgaagctgagga 40362
>gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromosome 7, complete sequence Length = 206418 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 aataatcctgaagctgagga 499 |||||||||||||||||||| Sbjct: 87454 aataatcctgaagctgagga 87435
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cggcgatcgacgcggcggcg 87 |||||||||||||||||||| Sbjct: 2166625 cggcgatcgacgcggcggcg 2166644
>gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence Length = 199690 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aaagaagaagaaaccggggc 156 |||||||||||||||||||| Sbjct: 303 aaagaagaagaaaccggggc 284
>gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosome 12, complete sequence Length = 202970 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 ctggtcctgaaagcagcaaggatg 447 |||||||||||||||| ||||||| Sbjct: 136272 ctggtcctgaaagcagaaaggatg 136295
>gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, complete sequence Length = 157813 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 aataatcctgaagctgagga 499 |||||||||||||||||||| Sbjct: 149023 aataatcctgaagctgagga 149004
>gb|AE014819.1| Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence Length = 251448 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttgaaaagaagaagaaaccg 152 |||||||||||||||||||| Sbjct: 10649 ttgaaaagaagaagaaaccg 10630
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cggcgatcgacgcggcggcg 87 |||||||||||||||||||| Sbjct: 328253 cggcgatcgacgcggcggcg 328272
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cgacgcggcggcgggcctcc 94 |||||||||||||||||||| Sbjct: 228989 cgacgcggcggcgggcctcc 229008
>emb|AJ250836.1|CAR250836 Cicer arietinum mRNA for phenylalanine ammonia-lyase (pal gene) Length = 2276 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 gcaccaaacccagttgtgactcca 380 |||||||||||||| ||||||||| Sbjct: 353 gcaccaaacccagtggtgactcca 330
>gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, complete sequence Length = 171818 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tgaaagcagcaaggatgatg 450 |||||||||||||||||||| Sbjct: 153841 tgaaagcagcaaggatgatg 153860
>gb|AC007662.3| Arabidopsis thaliana chromosome 2 BAC F9A16 genomic sequence, complete sequence Length = 102249 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 atggggttcatcctcaaatg 204 |||||||||||||||||||| Sbjct: 94380 atggggttcatcctcaaatg 94399
>gb|AC006527.5| Arabidopsis thaliana chromosome 2 clone F27C21 map mi421, complete sequence Length = 33117 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 atggggttcatcctcaaatg 204 |||||||||||||||||||| Sbjct: 14691 atggggttcatcctcaaatg 14710
>dbj|AK136688.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230023C11 product:unclassifiable, full insert sequence Length = 1460 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aactattgaaaagaagaaga 147 |||||||||||||||||||| Sbjct: 244 aactattgaaaagaagaaga 263
>ref|XM_692893.1| PREDICTED: Danio rerio similar to adenylate cyclase 1 (LOC569499), mRNA Length = 3267 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atcgacgcggcggcgggcct 92 |||||||||||||||||||| Sbjct: 2228 atcgacgcggcggcgggcct 2247
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cggcgatcgacgcggcggcg 87 |||||||||||||||||||| Sbjct: 1996442 cggcgatcgacgcggcggcg 1996423
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gggcaccatggggttcatcc 197 |||||||||||||||||||| Sbjct: 15258509 gggcaccatggggttcatcc 15258528
>gb|AC021878.4| Homo sapiens BAC clone RP11-18N21 from 4, complete sequence Length = 161391 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 acaattgggctcaaccttctgatc 288 ||||||| |||||||||||||||| Sbjct: 149340 acaattgcgctcaaccttctgatc 149317
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgacgcggcggcgggcctcc 94 |||||||||||||||||||| Sbjct: 6779953 cgacgcggcggcgggcctcc 6779934
>ref|XM_218617.3| PREDICTED: Rattus norvegicus myosin, heavy polypeptide 14 (predicted) (Myh14_predicted), mRNA Length = 6449 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aagcagcaaggatgatgttg 453 |||||||||||||||||||| Sbjct: 4661 aagcagcaaggatgatgttg 4680
>ref|NM_001011439.1| Xenopus tropicalis hypothetical LOC496925 (LOC496925), mRNA Length = 2993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gcctgcagtgtctcacagtt 30 |||||||||||||||||||| Sbjct: 122 gcctgcagtgtctcacagtt 103
>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0493G01 Length = 167587 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gggcaccatggggttcatcc 197 |||||||||||||||||||| Sbjct: 111882 gggcaccatggggttcatcc 111901
>dbj|BS000015.1| Pan troglodytes chromosome 22 clone:PTB-017F24, map 22, complete sequences Length = 117746 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 atctggtttagactctgagg 477 |||||||||||||||||||| Sbjct: 28556 atctggtttagactctgagg 28537
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tccggcgatcgacgcggcgg 85 |||||||||||||||||||| Sbjct: 103426 tccggcgatcgacgcggcgg 103407
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tccggcgatcgacgcggcgg 85 |||||||||||||||||||| Sbjct: 13759 tccggcgatcgacgcggcgg 13740
>dbj|AP000929.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778B17, complete sequence Length = 197195 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 catctggtcctgaaagcagc 440 |||||||||||||||||||| Sbjct: 176285 catctggtcctgaaagcagc 176266
>dbj|AP003781.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-49K4, complete sequence Length = 177748 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 catctggtcctgaaagcagc 440 |||||||||||||||||||| Sbjct: 145453 catctggtcctgaaagcagc 145434
>gb|BC088495.1| Xenopus tropicalis hypothetical LOC496925, mRNA (cDNA clone MGC:97560 IMAGE:6976215), complete cds Length = 2993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gcctgcagtgtctcacagtt 30 |||||||||||||||||||| Sbjct: 122 gcctgcagtgtctcacagtt 103
>emb|AL772205.12| Mouse DNA sequence from clone RP23-162C3 on chromosome 2, complete sequence Length = 142565 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 gaaactattgaaaagaagaagaaa 149 |||||||| ||||||||||||||| Sbjct: 15416 gaaactatggaaaagaagaagaaa 15393 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,498,708 Number of Sequences: 3902068 Number of extensions: 5498708 Number of successful extensions: 127044 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126370 Number of HSP's gapped (non-prelim): 672 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
