ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38g04 |
|---|---|
| Clone Library Name | barley_pub |
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 33.9 bits (76), Expect = 0.29 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Frame = +1 Query: 277 FAVTEKSIGIIRS---GHFNCPKRSAAGAGLDS----PPLSATPSPVSGVSNTPFKPNKK 435 F+ T S G R+ G + P + +GA + P LSATP P T K KK Sbjct: 409 FSTTTSSSGRARAPSPGDYKSPHVTGSGASAGTHKRMPALSATPVPADETPETGLK-EKK 467 Query: 436 RKTSEKGRH 462 K S++ RH Sbjct: 468 HKASKRSRH 476
>MDHM_FRAAN (P83373) Malate dehydrogenase, mitochondrial precursor (EC| 1.1.1.37) Length = 339 Score = 33.5 bits (75), Expect = 0.37 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Frame = +1 Query: 85 IREESTLHRRGRSSE---QREMEAVEGNGGGSGLVVTELSHIKELVKQLDVH-LGGSPGL 252 IR S + RRG SSE QR++ AV G GG G + L + LV QL ++ + G+PG+ Sbjct: 8 IRSVSRVARRGYSSESVPQRKV-AVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGV 66
>MINK1_MOUSE (Q9JM52) Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated| protein kinase kinase kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related kinase) (GCK family kinase MiNK) Length = 1308 Score = 33.5 bits (75), Expect = 0.37 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +1 Query: 334 KRSAAGAGLDSPPLSATPSPVSGVSNTPFKPNKKRKTSEKGRHQIRVS 477 KRS AGAG + P A+PSP +S TP P ++ ++G H+ V+ Sbjct: 541 KRSQAGAGPEPPISQASPSPPGPLSQTP--PMQRPVEPQEGPHKSLVA 586
>YKR4_EBV (P30117) Hypothetical protein BKRF4| Length = 217 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +1 Query: 241 SPGLCKHLAQQIFAVTEKSIGIIRSGHFNCPKRSAAGAGLDSPPLSATPSPVSGVSNTPF 420 +PG + ++ T++S G+ + F+ P+ A PP P+PV G ++ P Sbjct: 103 TPGSQASRSSRVSPSTQQSSGLTPTPSFSRPRTRA-------PPRPPAPAPVRGRASAPP 155 Query: 421 KPNK--KRKTSEKGRHQ 465 +P ++ T +KG H+ Sbjct: 156 RPPAPVQQSTKDKGPHR 172
>TCF19_PIG (Q9TSV4) Transcription factor 19 (Transcription factor SC1)| Length = 346 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 295 SIGIIRSGHFNCPKRSAAGAGLDSPPLSATPSPVSGVSNTPFKPNKKRKTSEK 453 SIG + H S +G+G +PP+S TP V + P P +RK++ + Sbjct: 178 SIGSLSKLHLQPLTFSRSGSGPQNPPVSTTPGEVRTTPSAP-PPRNRRKSAHR 229
>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E1) (Cellulase E1) (Endocellulase E1) Length = 562 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = +1 Query: 235 GGSPGLCKHLAQQIFAVTEKSIGIIRSGHFNCPKRSAAGAGLDSPPLSATPSPVSGVSNT 414 G + G+ K Q + V + + I+S F+ SA+ + SP +S +PSP S T Sbjct: 367 GDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPVGASASPSSQPSPSVSPSPSPSPSASRT 426 Query: 415 P 417 P Sbjct: 427 P 427
>RL31B_PSEAE (Q9HY25) 50S ribosomal protein L31 type B| Length = 87 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 32 THTHTHSRILPILHLLWKSGRNPPYTGEEEVPSKE 136 THTHT + P + L S +P YTGE+ E Sbjct: 34 THTHTDGKTYPYVTLDVSSASHPVYTGEQRKTKSE 68
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 30.8 bits (68), Expect = 2.4 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Frame = +1 Query: 196 HIKELVKQLDVHLGGSPGLCKHLAQQIFAVTEKSIGIIRSGHFNCPKRSAAGAGLDSPPL 375 H+K++VK +D G G +HL + FA + G F C R AG S P Sbjct: 593 HVKDIVKVIDGPHSGREGEIRHLYRS-FAFLHCKKLVENGGMFVCKARHLVLAG-GSKPR 650 Query: 376 SATPSPVSGVSNTPFKP--NKKRKTSEKGRH 462 T V G TP P + S +G+H Sbjct: 651 DVTNLTVGGF--TPMSPRISSPMHPSAEGQH 679
>DVL1_RAT (Q9WVB9) Segment polarity protein dishevelled homolog DVL-1| (Dishevelled-1) (DSH homolog 1) Length = 695 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 78 SGNQGGIHLTPARKKFRAKRDGGSGRQWRRERPGGDGA 191 SG+ H TP R++ RA GGSG + P G G+ Sbjct: 576 SGSTRSSHRTPGREERRATGAGGSGSESDHTVPSGSGS 613
>DVL1_MOUSE (P51141) Segment polarity protein dishevelled homolog DVL-1| (Dishevelled-1) (DSH homolog 1) Length = 695 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 78 SGNQGGIHLTPARKKFRAKRDGGSGRQWRRERPGGDGA 191 SG+ H TP R++ RA GGSG + P G G+ Sbjct: 576 SGSTRSSHRTPGREERRATGAGGSGSESDHTVPSGSGS 613
>PTM3C_ECOLI (P00550) PTS system mannitol-specific EIICBA component (EIICBA-Mtl)| (EII-Mtl) [Includes: Mannitol permease IIC component (PTS system mannitol-specific EIIC component); Mannitol-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (P Length = 637 Score = 29.3 bits (64), Expect = 7.1 Identities = 18/84 (21%), Positives = 37/84 (44%) Frame = +1 Query: 82 EIREESTLHRRGRSSEQREMEAVEGNGGGSGLVVTELSHIKELVKQLDVHLGGSPGLCKH 261 +++EE + R + + E+ + +G V +LSH+++++ D +G S Sbjct: 338 KVKEEDDIEAATRRMQDMKAESKGASPLSAGDVTNDLSHVRKIIVACDAGMGSSAMGAGV 397 Query: 262 LAQQIFAVTEKSIGIIRSGHFNCP 333 L ++I I + S N P Sbjct: 398 LRKKIQDAGLSQISVTNSAINNLP 421
>UVRC_PSEAE (Q9I0Q1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 608 Score = 29.3 bits (64), Expect = 7.1 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +1 Query: 109 RRGRSSEQREMEAVEGNGGGSGL-VVTELSHIKELVKQLDVHLGGSPGLCKHLAQQIFAV 285 RRG++ +E V G G ++ ++EL + L +PG+ K LA+QI+AV Sbjct: 545 RRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLAEQIYAV 604
>METE_VIBCH (Q9KRD8) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 761 Score = 29.3 bits (64), Expect = 7.1 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Frame = +1 Query: 82 EIREESTLHRRGRSSEQREMEAVEGNGGGSGLVVTELSHIKELVKQ-----LDVHLGGSP 246 EIR E + +R+G+ SEQ ++A++G HI + VK+ LDV + G Sbjct: 444 EIRTERSAYRQGKLSEQEYVQALKG-------------HIADAVKRQEALGLDVLVHGEA 490 Query: 247 ---GLCKHLAQQIFAVTEKSIGIIRSGHFNCPKRSAAGAGLD 363 + ++ A+ + G ++S C K + A ++ Sbjct: 491 ERNDMVEYFAENLAGFQTTQFGWVQSYGSRCVKPAIVVADIE 532
>CFAE_ECOLI (P25734) CFA/I fimbrial subunit E (Colonization factor antigen I| subunit E) Length = 360 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = +1 Query: 307 IRSGHFNCPKRSAAGAGLD--SPPLSATPSPVSGVSNTPFKPNKKRK 441 + S HF C + A+GA L P P GV N K N KR+ Sbjct: 136 LNSSHFQCNREQASGATLSLYIPAGELNKLPFGGVWNAVLKLNVKRR 182
>SPT6H_DROME (Q9W420) Transcription elongation factor SPT6| Length = 1831 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 277 FAVTEKSIGIIRSGHFNCPKRSAAGAGLDSPPLSATPSPVSGVSNTPFKPN 429 +++T+ G SG SA GAG+ S ++ +P G NTP+ P+ Sbjct: 1592 YSITQSITGYGTSGS------SAPGAGVSSSHYGSSSTPSFGAINTPYTPS 1636
>ENV_HV2CA (P24105) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 859 Score = 28.9 bits (63), Expect = 9.2 Identities = 17/70 (24%), Positives = 31/70 (44%) Frame = +1 Query: 103 LHRRGRSSEQREMEAVEGNGGGSGLVVTELSHIKELVKQLDVHLGGSPGLCKHLAQQIFA 282 +H+ E E G GG ++ +I L++QL L G +C++L +IF Sbjct: 724 IHKDPEQPASEETEEDVGGNGGDRSWPWQIEYIHFLIRQLIRLLTGLYNICRNLLSRIFQ 783 Query: 283 VTEKSIGIIR 312 + + +R Sbjct: 784 TLQPILQNLR 793
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 28.9 bits (63), Expect = 9.2 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 94 ESTLHRRGRSSEQREMEAVEGNGGGS 171 EST HR G S +EAV+G GG+ Sbjct: 148 ESTAHREGAESAVATVEAVQGRPGGT 173
>CI042_RAT (Q6AYT4) Protein C9orf42 homolog| Length = 286 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 325 NCPKRSAAGAGLDSPPLSATPSPVSGVSNTPFKPNKKRKTSEKG 456 N ++SA+ +D P+S PSP G+ F P+ + S G Sbjct: 125 NDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNG 168
>CI042_HUMAN (Q96E09) Protein C9orf42| Length = 287 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 325 NCPKRSAAGAGLDSPPLSATPSPVSGVSNTPFKPNKKRKTSEKG 456 N ++SA+ +D P+S PSP G+ F P+ + S G Sbjct: 126 NDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNG 169
>CI042_MOUSE (Q9DB52) Protein C9orf42 homolog| Length = 284 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 325 NCPKRSAAGAGLDSPPLSATPSPVSGVSNTPFKPNKKRKTSEKG 456 N ++SA+ +D P+S PSP G+ F P+ + S G Sbjct: 123 NDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNG 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,607,334 Number of Sequences: 219361 Number of extensions: 1069499 Number of successful extensions: 3428 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3426 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
