ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY676930.1| Oryza sativa (indica cultivar-group) transcription factor WRKY31 (WRKY31) mRNA, complete cds Length = 1086 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 11 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 67 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 68 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 127 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 128 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 187 Query: 323 tc 324 || Sbjct: 188 tc 189 Score = 77.8 bits (39), Expect = 3e-11 Identities = 95/113 (84%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 379 gcgacgcccagccccgtcagcggcgtctccaacacgccgttcaagcccaacaagaagagg 438 ||||| ||||||||| |||||| ||||||| || ||| |||||| ||| |||||||||| Sbjct: 244 gcgactcccagccccctcagcgacgtctccgacttgcctttcaaggccaccaagaagagg 303 Query: 439 aagacgtcg---gagaaagggcggcatcagatcagggtgagctcggcgggagg 488 ||||||||| ||||| | |||||||||| |||||||||||| ||||||| Sbjct: 304 aagacgtcgacggagaagaagaggcatcagattagggtgagctcgacgggagg 356
>tpg|BK005077.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 74 (WRKY74) gene, complete cds Length = 1624 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 11 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 67 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 68 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 127 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 128 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 187 Query: 323 tc 324 || Sbjct: 188 tc 189 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 458 ggcatcagatcagggtgagctcggcgggagg 488 |||||||||| |||||||||||| ||||||| Sbjct: 441 ggcatcagattagggtgagctcgacgggagg 471
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 10076289 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 10076345 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 10076346 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 10076405 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 10076406 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 10076465 Query: 323 tc 324 || Sbjct: 10076466 tc 10076467 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 458 ggcatcagatcagggtgagctcggcgggagg 488 |||||||||| |||||||||||| ||||||| Sbjct: 10076719 ggcatcagattagggtgagctcgacgggagg 10076749
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 105593 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 105649 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 105650 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 105709 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 105710 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 105769 Query: 323 tc 324 || Sbjct: 105770 tc 105771 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 458 ggcatcagatcagggtgagctcggcgggagg 488 |||||||||| |||||||||||| ||||||| Sbjct: 106023 ggcatcagattagggtgagctcgacgggagg 106053
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 35967 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 36023 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 36024 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 36083 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 36084 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 36143 Query: 323 tc 324 || Sbjct: 36144 tc 36145 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 458 ggcatcagatcagggtgagctcggcgggagg 488 |||||||||| |||||||||||| ||||||| Sbjct: 36397 ggcatcagattagggtgagctcgacgggagg 36427
>dbj|AK065265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K14, full insert sequence Length = 1714 Score = 135 bits (68), Expect = 2e-28 Identities = 155/182 (85%), Gaps = 9/182 (4%) Strand = Plus / Plus Query: 149 tggaaggcaatggaggagggagcggcctggtggtgacggagctgagccacatcaaggagc 208 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 306 tggagggcaatggaggaggg--cggc-tggtggtgacggagctgagccacatcaaggagc 362 Query: 209 tggtgaagcagctggacgtgcacctggg------aggctcgccgggcctctgcaagcacc 262 | |||| ||||||||| | |||||||| ||||| || | |||||||||||||| Sbjct: 363 tcgtgaggcagctggagggacacctgggtggctccggctcccccgacctctgcaagcacc 422 Query: 263 tcgcccagcagatcttcgccgtcaccgagaagtccatcggcatcatcaggtccggccact 322 | ||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct: 423 tggcctcgcagatcttctccgtcaccgagcgctccatcggcatgatcaggtccggccact 482 Query: 323 tc 324 || Sbjct: 483 tc 484 Score = 77.8 bits (39), Expect = 3e-11 Identities = 95/113 (84%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 379 gcgacgcccagccccgtcagcggcgtctccaacacgccgttcaagcccaacaagaagagg 438 ||||| ||||||||| |||||| ||||||| || ||| |||||| ||| |||||||||| Sbjct: 539 gcgactcccagccccctcagcgacgtctccgacttgcctttcaaggccaccaagaagagg 598 Query: 439 aagacgtcg---gagaaagggcggcatcagatcagggtgagctcggcgggagg 488 ||||||||| ||||| | |||||||||| |||||||||||| ||||||| Sbjct: 599 aagacgtcgacggagaagaagaggcatcagattagggtgagctcgacgggagg 651
>ref|XM_482150.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 521 gccgacgacgggcacagctggaggaag 547
>gb|AY676931.1| Oryza sativa (indica cultivar-group) transcription factor WRKY32 (WRKY32) mRNA, complete cds Length = 960 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 385 gccgacgacgggcacagctggaggaag 411
>tpg|BK005072.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 69 (WRKY69) gene, complete cds Length = 1054 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 479 gccgacgacgggcacagctggaggaag 505
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 332 ccaagcgctcggccgccggcgcc 354 ||||||||||||||||||||||| Sbjct: 1947858 ccaagcgctcggccgccggcgcc 1947880
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 18213416 gccgacgacgggcacagctggaggaag 18213442
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 35728 gccgacgacgggcacagctggaggaag 35754
>dbj|AK111606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102P22, full insert sequence Length = 1378 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 505 gccgacgacggccacagctggaggaag 531 ||||||||||| ||||||||||||||| Sbjct: 521 gccgacgacgggcacagctggaggaag 547
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 505 gccgacgacggccacagctgga 526 |||||||||||||||||||||| Sbjct: 222449 gccgacgacggccacagctgga 222428
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 agaagaggaagacgtcggagaa 452 |||||||||||||||||||||| Sbjct: 1743494 agaagaggaagacgtcggagaa 1743473
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ctggtggtgacggagctgagc 195 ||||||||||||||||||||| Sbjct: 4453207 ctggtggtgacggagctgagc 4453227 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gccgccggcgccggcctcga 362 |||||||||||||||||||| Sbjct: 30978451 gccgccggcgccggcctcga 30978432
>gb|AC046185.14| Homo sapiens chromosome 17, clone RP11-51F16, complete sequence Length = 173637 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 139 atggaggcagtggaaggcaatggaggagg 167 |||||||||||| |||| ||||||||||| Sbjct: 18991 atggaggcagtgaaaggtaatggaggagg 18963
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 agcgctcggccgccggcgccg 355 ||||||||||||||||||||| Sbjct: 139922 agcgctcggccgccggcgccg 139902
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ctggtggtgacggagctgagc 195 ||||||||||||||||||||| Sbjct: 4453322 ctggtggtgacggagctgagc 4453342 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gccgccggcgccggcctcga 362 |||||||||||||||||||| Sbjct: 31068974 gccgccggcgccggcctcga 31068955
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ctggtggtgacggagctgagc 195 ||||||||||||||||||||| Sbjct: 58499 ctggtggtgacggagctgagc 58519
>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence Length = 191583 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 139 atggaggcagtggaaggcaatggaggagg 167 |||||||||||| |||| ||||||||||| Sbjct: 163538 atggaggcagtgaaaggtaatggaggagg 163510
>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete sequence Length = 167407 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 gagcaaagagagatggaggcagtgg 151 ||||||||||||||||||| ||||| Sbjct: 63547 gagcaaagagagatggagggagtgg 63523
>dbj|AK061059.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H10, full insert sequence Length = 949 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 ctggtggtgacggagctgagc 195 ||||||||||||||||||||| Sbjct: 416 ctggtggtgacggagctgagc 396
>gb|AY104070.1| Zea mays PCO115703 mRNA sequence Length = 2000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 ccgttcaagcccaacaagaag 435 ||||||||||||||||||||| Sbjct: 1005 ccgttcaagcccaacaagaag 1025
>ref|XM_469828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gccgccggcgccggcctcga 362 |||||||||||||||||||| Sbjct: 327 gccgccggcgccggcctcga 308
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 acgccccggccgacgacggc 516 |||||||||||||||||||| Sbjct: 27016 acgccccggccgacgacggc 26997
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence Length = 355714 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tggtggtgacggagctgagc 195 |||||||||||||||||||| Sbjct: 306228 tggtggtgacggagctgagc 306209
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gatcttcgccgtcaccgaga 292 |||||||||||||||||||| Sbjct: 2752648 gatcttcgccgtcaccgaga 2752667
>ref|NM_178883.3| Mus musculus SCY1-like 1 binding protein 1 (Scyl1bp1), mRNA Length = 2510 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 862 aggagctgatgcagcagctggacgtgca 889
>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence Length = 157809 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gatcttacatttgctctgga 83 |||||||||||||||||||| Sbjct: 7929 gatcttacatttgctctgga 7910
>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence Length = 188060 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gagagatggaggcagtggaa 153 |||||||||||||||||||| Sbjct: 117400 gagagatggaggcagtggaa 117381
>ref|XM_817163.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0143) partial mRNA Length = 11337 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tggtggtgacggagctgagc 195 |||||||||||||||||||| Sbjct: 7762 tggtggtgacggagctgagc 7743
>ref|XM_755711.1| Ustilago maydis 521 hypothetical protein (UM04657.1) partial mRNA Length = 5832 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aagaagttccgagcaaagag 136 |||||||||||||||||||| Sbjct: 493 aagaagttccgagcaaagag 474
>emb|BX890591.12| Zebrafish DNA sequence from clone DKEY-184J23 in linkage group 19, complete sequence Length = 171079 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gctgtccgcgacgcccagcc 391 |||||||||||||||||||| Sbjct: 151011 gctgtccgcgacgcccagcc 151030
>ref|XM_391202.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG11026.1) partial mRNA Length = 14244 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gctgagccacatcaaggagc 208 |||||||||||||||||||| Sbjct: 9633 gctgagccacatcaaggagc 9614
>gb|AC113511.7| Mus musculus chromosome 1, clone RP23-378O19, complete sequence Length = 223985 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 108139 aggagctgatgcagcagctggacgtgca 108112
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gccgccggcgccggcctcga 362 |||||||||||||||||||| Sbjct: 117613 gccgccggcgccggcctcga 117632
>gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, complete sequence Length = 171457 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gatcttacatttgctctgga 83 |||||||||||||||||||| Sbjct: 58887 gatcttacatttgctctgga 58906
>emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on chromosome 20 Contains the 5' end of the CDH4 gene for retinal cadherin 4 type 1 (R-cadherin), complete sequence Length = 121478 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tggtgaagcagctggacgtg 228 |||||||||||||||||||| Sbjct: 2836 tggtgaagcagctggacgtg 2855
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 tcggccgccggcgccggcctcgac 363 |||| ||||||||||||||||||| Sbjct: 980969 tcggtcgccggcgccggcctcgac 980946
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gctcggccgccggcgccggc 357 |||||||||||||||||||| Sbjct: 158792 gctcggccgccggcgccggc 158811
>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11 Length = 102165 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 acatcaaggagctggtgaag 216 |||||||||||||||||||| Sbjct: 42629 acatcaaggagctggtgaag 42648
>emb|CR354599.10| Zebrafish DNA sequence from clone CH211-259K16 in linkage group 13, complete sequence Length = 149455 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acatccccattttgcctctc 20 |||||||||||||||||||| Sbjct: 125196 acatccccattttgcctctc 125215
>gb|AE011640.1| Xanthomonas axonopodis pv. citri str. 306, section 18 of 469 of the complete genome Length = 10281 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cgctcggccgccggcgccgg 356 |||||||||||||||||||| Sbjct: 4458 cgctcggccgccggcgccgg 4477
>gb|AE012167.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 75 of 460 of the complete genome Length = 10579 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ggacgccccggccgacgacg 514 |||||||||||||||||||| Sbjct: 10415 ggacgccccggccgacgacg 10434
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence Length = 139476 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 gaggaagaagttccgagcaaagag 136 ||||||||||| |||||||||||| Sbjct: 66545 gaggaagaagtgccgagcaaagag 66568
>gb|AC008966.9| Homo sapiens chromosome 5 clone CTD-2366F13, complete sequence Length = 174831 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 gaggaagaagttccgagcaaagag 136 ||||||||||| |||||||||||| Sbjct: 17556 gaggaagaagtgccgagcaaagag 17579
>dbj|AK165909.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730018A20 product:hypothetical protein, full insert sequence Length = 2479 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 831 aggagctgatgcagcagctggacgtgca 858
>dbj|AK170455.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630104E20 product:hypothetical protein, full insert sequence Length = 2667 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 1020 aggagctgatgcagcagctggacgtgca 1047
>dbj|AK169151.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920085F10 product:hypothetical protein, full insert sequence Length = 2505 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 854 aggagctgatgcagcagctggacgtgca 881
>gb|AC027684.3| Homo sapiens chromosome 16 clone RP11-148F10, complete sequence Length = 187520 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaagagagatggaggcagtg 150 |||||||||||||||||||| Sbjct: 81053 aaagagagatggaggcagtg 81072
>gb|AC010419.6| Homo sapiens chromosome 5 clone CTD-2177J8, complete sequence Length = 124752 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctgccccaagcgctcggccg 346 |||||||||||||||||||| Sbjct: 87385 ctgccccaagcgctcggccg 87366
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ggacgccccggccgacgacg 514 |||||||||||||||||||| Sbjct: 4206650 ggacgccccggccgacgacg 4206631
>dbj|AK039170.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230104G01 product:hypothetical protein, full insert sequence Length = 1553 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 872 aggagctgatgcagcagctggacgtgca 899
>gb|BC013262.1| Mus musculus SCY1-like 1 binding protein 1, mRNA (cDNA clone IMAGE:3595577) Length = 1908 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 244 aggagctgatgcagcagctggacgtgca 271
>gb|BC013244.1| Mus musculus SCY1-like 1 binding protein 1, mRNA (cDNA clone IMAGE:3709346) Length = 1908 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 244 aggagctgatgcagcagctggacgtgca 271
>gb|AF285634.1|AF285634 Burkholderia thailandensis capsule gene cluster, partial sequence Length = 7873 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aagcgctcggccgccggcgc 353 |||||||||||||||||||| Sbjct: 1174 aagcgctcggccgccggcgc 1193
>dbj|AK043953.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830058K19 product:hypothetical protein, full insert sequence Length = 2510 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacgtgca 230 |||||||| || |||||||||||||||| Sbjct: 862 aggagctgatgcagcagctggacgtgca 889
>gb|AC093515.4| Homo sapiens chromosome 16 clone CTD-2535I10, complete sequence Length = 184182 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aaagagagatggaggcagtg 150 |||||||||||||||||||| Sbjct: 144520 aaagagagatggaggcagtg 144539
>gb|AC016655.6|AC016655 Homo sapiens chromosome 5 clone RPCI-1_36N5, complete sequence Length = 111388 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 ctgccccaagcgctcggccg 346 |||||||||||||||||||| Sbjct: 84983 ctgccccaagcgctcggccg 84964
>ref|NM_204273.1| Gallus gallus ribosomal protein L35 (RPL35), mRNA Length = 480 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacg 226 |||||||| ||||||||||||||| Sbjct: 63 aggagctgctgaagcagctggacg 86
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ccgccggcgccggcctcgac 363 |||||||||||||||||||| Sbjct: 4521786 ccgccggcgccggcctcgac 4521805
>ref|XM_575160.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA D430039N05 gene (LOC499821), mRNA Length = 2649 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ctcggcgggaggaggagcgg 496 |||||||||||||||||||| Sbjct: 53 ctcggcgggaggaggagcgg 34
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gctcggccgccggcgccggc 357 |||||||||||||||||||| Sbjct: 3111752 gctcggccgccggcgccggc 3111733
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 ccgcgacgcccagccccgtcagcg 400 |||| ||||||||||||||||||| Sbjct: 22168 ccgccacgcccagccccgtcagcg 22191
>dbj|AP003462.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-480C22, complete sequences Length = 190032 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gcagtggaaggcaatggagg 164 |||||||||||||||||||| Sbjct: 122560 gcagtggaaggcaatggagg 122541
>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete sequence Length = 177741 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agtggaaggcaatggaggag 166 |||||||||||||||||||| Sbjct: 57097 agtggaaggcaatggaggag 57116
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aagcgctcggccgccggcgc 353 |||||||||||||||||||| Sbjct: 1486409 aagcgctcggccgccggcgc 1486428
>dbj|AB046395.1| Gallus gallus RPL35 mRNA for ribosomal protein L35, complete cds Length = 480 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 aggagctggtgaagcagctggacg 226 |||||||| ||||||||||||||| Sbjct: 63 aggagctgctgaagcagctggacg 86 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,954,086 Number of Sequences: 3902068 Number of extensions: 4954086 Number of successful extensions: 117113 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115337 Number of HSP's gapped (non-prelim): 1770 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
