ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 577 e-161
2dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 577 e-161
3dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 521 e-145
4dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 426 e-116
5gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome... 254 3e-64
6gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome... 254 3e-64
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 254 3e-64
9dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401 50 0.008
10gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 48 0.033
11ref|NM_018114.4| Homo sapiens DALR anticodon binding domain cont... 46 0.13
12dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018 46 0.13
13gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Canc... 46 0.13
14gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydroge... 46 0.13
15gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 o... 44 0.52
16emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA 44 0.52
17ref|XM_812643.1| Trypanosoma cruzi strain CL Brener gamma-tubuli... 42 2.1
18emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 42 2.1
19gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete s... 42 2.1
20gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, co... 42 2.1
21gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 8.2
22gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 8.2
23gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1... 40 8.2
24gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1)... 40 8.2
25gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.2
26dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE20141... 40 8.2
27ref|XM_373772.3| PREDICTED: Homo sapiens hypothetical LOC388459 ... 40 8.2
28dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 8.2
29dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.2
30ref|NM_004414.5| Homo sapiens Down syndrome critical region gene... 40 8.2
31gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 8.2
32emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surroundi... 40 8.2
33emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 8.2
34dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 8.2
35dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.2
36gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 8.2
37dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.2
38dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 8.2

>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full
           insert sequence
          Length = 1130

 Score =  577 bits (291), Expect = e-161
 Identities = 453/507 (89%)
 Strand = Plus / Plus

                                                                       
Query: 86  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 67  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 126

                                                                       
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 127 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 186

                                                                       
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 187 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 246

                                                                       
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 325
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 306

                                                                       
Query: 326 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 385
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 307 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 366

                                                                       
Query: 386 cacatgccgcctatctgctccccgcttgtaagaccaggacggccagcggaggctgcgccg 445
           ||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||||| 
Sbjct: 367 cacatgccgcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgcca 426

                                                                       
Query: 446 gttatctccaaggccctggaggacgtcctcatgagctctgggatgctaaatttgaaggag 505
           || |||||||||  ||| |||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 427 gtcatctccaagaacctagaggacattctcatgagctcagggatgctaaatttgaaggag 486

                                                                       
Query: 506 ctctgtttgatcagtgggaaggcttcgtgggtagcatacttggatgtctattgtttgaat 565
           ||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||
Sbjct: 487 ctctgtttgatcagtgggaaggcatcttggttagcatacctggatgtctattgtttgaat 546

                                      
Query: 566 gccgatggatctcttttcgatgctgca 592
           || ||||| ||||| ||||| ||||||
Sbjct: 547 gctgatgggtctctattcgacgctgca 573



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>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full
           insert sequence
          Length = 1254

 Score =  577 bits (291), Expect = e-161
 Identities = 453/507 (89%)
 Strand = Plus / Plus

                                                                       
Query: 86  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 34  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 93

                                                                       
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 94  gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 153

                                                                       
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 154 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 213

                                                                       
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 325
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 273

                                                                       
Query: 326 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 385
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 274 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 333

                                                                       
Query: 386 cacatgccgcctatctgctccccgcttgtaagaccaggacggccagcggaggctgcgccg 445
           ||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||||| 
Sbjct: 334 cacatgccgcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgcca 393

                                                                       
Query: 446 gttatctccaaggccctggaggacgtcctcatgagctctgggatgctaaatttgaaggag 505
           || |||||||||  ||| |||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 394 gtcatctccaagaacctagaggacattctcatgagctcagggatgctaaatttgaaggag 453

                                                                       
Query: 506 ctctgtttgatcagtgggaaggcttcgtgggtagcatacttggatgtctattgtttgaat 565
           ||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||
Sbjct: 454 ctctgtttgatcagtgggaaggcatcttggttagcatacctggatgtctattgtttgaat 513

                                      
Query: 566 gccgatggatctcttttcgatgctgca 592
           || ||||| ||||| ||||| ||||||
Sbjct: 514 gctgatgggtctctattcgacgctgca 540



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>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full
           insert sequence
          Length = 1271

 Score =  521 bits (263), Expect = e-145
 Identities = 395/439 (89%)
 Strand = Plus / Plus

                                                                       
Query: 154 ccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccggcccgacgc 213
           |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 89  ccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgccccgacgc 148

                                                                       
Query: 214 ccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcctccgcgca 273
            || |||| |||||| |||||||| ||||||||||| |||| |||||| |||||||| ||
Sbjct: 149 gcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcctccgccca 208

                                                                       
Query: 274 cgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 333
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 268

                                                                       
Query: 334 gatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttccacatgcc 393
           |||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||||||||||
Sbjct: 269 gatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttccacatgcc 328

                                                                       
Query: 394 gcctatctgctccccgcttgtaagaccaggacggccagcggaggctgcgccggttatctc 453
           ||||||||| ||||||||||| |||||||||||||| || ||||  ||||| || |||||
Sbjct: 329 gcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgccagtcatctc 388

                                                                       
Query: 454 caaggccctggaggacgtcctcatgagctctgggatgctaaatttgaaggagctctgttt 513
           ||||  ||| |||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 caagaacctagaggacattctcatgagctcagggatgctaaatttgaaggagctctgttt 448

                                                                       
Query: 514 gatcagtgggaaggcttcgtgggtagcatacttggatgtctattgtttgaatgccgatgg 573
           ||||||||||||||| || ||| |||||||| |||||||||||||||||||||| |||||
Sbjct: 449 gatcagtgggaaggcatcttggttagcatacctggatgtctattgtttgaatgctgatgg 508

                              
Query: 574 atctcttttcgatgctgca 592
            ||||| ||||| ||||||
Sbjct: 509 gtctctattcgacgctgca 527



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>dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115L08, full
           insert sequence
          Length = 1487

 Score =  426 bits (215), Expect = e-116
 Identities = 350/395 (88%)
 Strand = Plus / Plus

                                                                       
Query: 86  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 30  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 89

                                                                       
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 90  gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 149

                                                                       
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 150 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 209

                                                                       
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 325
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 269

                                                                       
Query: 326 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 385
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 270 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 329

                                                                       
Query: 386 cacatgccgcctatctgctccccgcttgtaagaccaggacggccagcggaggctgcgccg 445
           ||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||||| 
Sbjct: 330 cacatgccgcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgcca 389

                                              
Query: 446 gttatctccaaggccctggaggacgtcctcatgag 480
           || |||||||||  ||| |||||| | ||||||||
Sbjct: 390 gtcatctccaagaacctagaggacattctcatgag 424



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                        
Query: 479  agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
            ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 968  agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 1027

                  
Query: 539  gcatac 544
            ||||||
Sbjct: 1028 gcatac 1033



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>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046A04, complete sequence
          Length = 141001

 Score =  254 bits (128), Expect = 3e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                         
Query: 86    atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
             ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 82060 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 82119

                                                                         
Query: 146   gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
             |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 82120 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 82179

                                                                         
Query: 206   cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
             |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 82180 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 82239

                                                     
Query: 266   tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
             ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 82240 tccgcccacggctccgccctcgtccgcctcggcgacaccg 82279



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 374   gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
             ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || 
Sbjct: 82565 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 82624

                                                            
Query: 434   gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
             ||||  ||||| || |||||||||  ||| |||||| | ||||||||
Sbjct: 82625 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 82671



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                         
Query: 479   agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
             ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 83215 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 83274

                   
Query: 539   gcatac 544
             ||||||
Sbjct: 83275 gcatac 83280



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 305   gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
             ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 82394 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 82453

                  
Query: 365   ggatc 369
             |||||
Sbjct: 82454 ggatc 82458



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 547   ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
             ||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 86734 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 86779



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>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007C02, complete sequence
          Length = 148265

 Score =  254 bits (128), Expect = 3e-64
 Identities = 197/220 (89%)
 Strand = Plus / Minus

                                                                         
Query: 86    atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
             ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 14129 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 14070

                                                                         
Query: 146   gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
             |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 14069 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 14010

                                                                         
Query: 206   cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
             |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 14009 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 13950

                                                     
Query: 266   tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
             ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 13949 tccgcccacggctccgccctcgtccgcctcggcgacaccg 13910



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                         
Query: 374   gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
             ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || 
Sbjct: 13624 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 13565

                                                            
Query: 434   gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
             ||||  ||||| || |||||||||  ||| |||||| | ||||||||
Sbjct: 13564 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 13518



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                         
Query: 479   agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
             ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 12974 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 12915

                   
Query: 539   gcatac 544
             ||||||
Sbjct: 12914 gcatac 12909



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 305   gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
             ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 13795 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 13736

                  
Query: 365   ggatc 369
             |||||
Sbjct: 13735 ggatc 13731



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 547  ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
            ||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 9455 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 9410



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  254 bits (128), Expect = 3e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                            
Query: 86       atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
                ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11880333 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11880392

                                                                            
Query: 146      gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
                |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 11880393 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11880452

                                                                            
Query: 206      cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
                |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11880453 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11880512

                                                        
Query: 266      tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
                ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11880513 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11880552



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 374      gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
                ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || 
Sbjct: 11880838 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 11880897

                                                               
Query: 434      gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
                ||||  ||||| || |||||||||  ||| |||||| | ||||||||
Sbjct: 11880898 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 11880944



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 479      agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
                ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 11881488 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 11881547

                      
Query: 539      gcatac 544
                ||||||
Sbjct: 11881548 gcatac 11881553



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                            
Query: 305      gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
                ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 11880667 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11880726

                     
Query: 365      ggatc 369
                |||||
Sbjct: 11880727 ggatc 11880731



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 547      ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
                ||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 11885007 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 11885052



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  254 bits (128), Expect = 3e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                            
Query: 86       atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
                ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11958740 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11958799

                                                                            
Query: 146      gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
                |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 11958800 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11958859

                                                                            
Query: 206      cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
                |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11958860 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11958919

                                                        
Query: 266      tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
                ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11958920 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11958959



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 374      gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
                ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || 
Sbjct: 11959245 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 11959304

                                                               
Query: 434      gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
                ||||  ||||| || |||||||||  ||| |||||| | ||||||||
Sbjct: 11959305 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 11959351



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                            
Query: 479      agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
                ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 11959895 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 11959954

                      
Query: 539      gcatac 544
                ||||||
Sbjct: 11959955 gcatac 11959960



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                            
Query: 305      gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
                ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 11959074 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11959133

                     
Query: 365      ggatc 369
                |||||
Sbjct: 11959134 ggatc 11959138



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 547      ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
                ||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 11963414 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 11963459



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>dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401
          Length = 1561

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 225 ccgaagcccgccccaccaccgtcgc 249
           |||||||||||||||||||||||||
Sbjct: 5   ccgaagcccgccccaccaccgtcgc 29



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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 208   cgacgcccgacgcctcgccgaagcccgc 235
             ||||||||||||||||||||| ||||||
Sbjct: 72167 cgacgcccgacgcctcgccgacgcccgc 72194



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>ref|NM_018114.4| Homo sapiens DALR anticodon binding domain containing 3 (DALRD3),
           transcript variant 2, mRNA
          Length = 2242

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 225 ccgaagcccgccccaccaccgtc 247
           |||||||||||||||||||||||
Sbjct: 43  ccgaagcccgccccaccaccgtc 65



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>dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018
          Length = 1752

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 225 ccgaagcccgccccaccaccgtc 247
           |||||||||||||||||||||||
Sbjct: 44  ccgaagcccgccccaccaccgtc 66



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>gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120173

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 225   ccgaagcccgccccaccaccgtc 247
             |||||||||||||||||||||||
Sbjct: 69461 ccgaagcccgccccaccaccgtc 69439



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>gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydrogenase type II gene, complete
             cds
          Length = 10557

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 225   ccgaagcccgccccaccaccgtc 247
             |||||||||||||||||||||||
Sbjct: 10291 ccgaagcccgccccaccaccgtc 10313



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>gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 of the complete genome
          Length = 13203

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    ggccgcggagaccgacgcgacg 109
             ||||||||||||||||||||||
Sbjct: 10498 ggccgcggagaccgacgcgacg 10477



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>emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA
          Length = 957

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 88  ggccgcggagaccgacgcgacg 109
           ||||||||||||||||||||||
Sbjct: 928 ggccgcggagaccgacgcgacg 907



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>ref|XM_812643.1| Trypanosoma cruzi strain CL Brener gamma-tubulin complex subunit
            (Tc00.1047053511211.150) partial mRNA
          Length = 2355

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 572  ggatctcttttcgatgctgca 592
            |||||||||||||||||||||
Sbjct: 1593 ggatctcttttcgatgctgca 1613



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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    cgccccaccaccgtcgcgctcggcg 257
              ||||||||||||||||| |||||||
Sbjct: 169352 cgccccaccaccgtcgccctcggcg 169328



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>gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete sequence
          Length = 120504

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 547   ggatgtctattgtttgaatgccgatggatctcttttcgatgctgc 591
             |||| ||||||||||| |||| || || |||||||| ||||||||
Sbjct: 41479 ggatatctattgtttggatgctgacgggtctctttttgatgctgc 41523



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>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence
          Length = 165778

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   ctcatgagctctgggatgcta 493
             |||||||||||||||||||||
Sbjct: 59921 ctcatgagctctgggatgcta 59901



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     cgcgacggcgcccggcgggc 122
               ||||||||||||||||||||
Sbjct: 1456935 cgcgacggcgcccggcgggc 1456954



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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ccgtcgcgctcggcgccgtc 262
             ||||||||||||||||||||
Sbjct: 74916 ccgtcgcgctcggcgccgtc 74897



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>gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1, mRNA (cDNA clone
           MGC:10263 IMAGE:3944959), complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccgccctcgtccgcctcggc 298
           ||||||||||||||||||||
Sbjct: 28  ccgccctcgtccgcctcggc 9



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>gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1) mRNA, complete
           cds
          Length = 2492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccgccctcgtccgcctcggc 298
           ||||||||||||||||||||
Sbjct: 260 ccgccctcgtccgcctcggc 241



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     cggcgacaccgccatgctcg 314
               ||||||||||||||||||||
Sbjct: 3956940 cggcgacaccgccatgctcg 3956959



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>dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE2014104, highly similar
           to DOWN SYNDROME CRITICAL REGION PROTEIN 1
          Length = 2407

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccgccctcgtccgcctcggc 298
           ||||||||||||||||||||
Sbjct: 189 ccgccctcgtccgcctcggc 170



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>ref|XM_373772.3| PREDICTED: Homo sapiens hypothetical LOC388459 (LOC388459), mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 ccaaggccctggaggacgtc 472
           ||||||||||||||||||||
Sbjct: 22  ccaaggccctggaggacgtc 3



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>dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 26/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ccgccctcgtccgcctcggc 298
             ||||||||||||||||||||
Sbjct: 24614 ccgccctcgtccgcctcggc 24633



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 103     cgcgacggcgcccggcgggc 122
               ||||||||||||||||||||
Sbjct: 8315312 cgcgacggcgcccggcgggc 8315293



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 162     tccccctcgcgttcctcgagcgcc 185
               ||||||||||||||| ||||||||
Sbjct: 7491005 tccccctcgcgttccgcgagcgcc 7491028



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>ref|NM_004414.5| Homo sapiens Down syndrome critical region gene 1 (DSCR1),
           transcript variant 1, mRNA
          Length = 2457

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccgccctcgtccgcctcggc 298
           ||||||||||||||||||||
Sbjct: 209 ccgccctcgtccgcctcggc 190



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>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ccgacgcgacggcgcccggc 118
             ||||||||||||||||||||
Sbjct: 25620 ccgacgcgacggcgcccggc 25639



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>emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-VL15RS
          Length = 818

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 tcgccccccgccgagacccc 357
           ||||||||||||||||||||
Sbjct: 80  tcgccccccgccgagacccc 99



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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 279     ccgccctcgtccgcctcggcgaca 302
               |||||||||||| |||||||||||
Sbjct: 1837776 ccgccctcgtcctcctcggcgaca 1837753



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>dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-31L12, complete
             sequence
          Length = 35714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ccgccctcgtccgcctcggc 298
             ||||||||||||||||||||
Sbjct: 23793 ccgccctcgtccgcctcggc 23812



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>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    ccgccctcgtccgcctcggc 298
              ||||||||||||||||||||
Sbjct: 206823 ccgccctcgtccgcctcggc 206842



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     gccccaccaccgtcgcgctc 253
               ||||||||||||||||||||
Sbjct: 2297530 gccccaccaccgtcgcgctc 2297549



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     gccccaccaccgtcgcgctc 253
               ||||||||||||||||||||
Sbjct: 2295073 gccccaccaccgtcgcgctc 2295092



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     cgcgacggcgcccggcgggc 122
               ||||||||||||||||||||
Sbjct: 1917016 cgcgacggcgcccggcgggc 1917035



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>dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874N19, complete
              sequence
          Length = 165113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    ccaaggccctggaggacgtc 472
              ||||||||||||||||||||
Sbjct: 114636 ccaaggccctggaggacgtc 114617



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>dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 6/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ccgccctcgtccgcctcggc 298
             ||||||||||||||||||||
Sbjct: 16582 ccgccctcgtccgcctcggc 16601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,173,651
Number of Sequences: 3902068
Number of extensions: 3173651
Number of successful extensions: 64781
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64010
Number of HSP's gapped (non-prelim): 771
length of query: 600
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 577
effective length of database: 17,143,297,704
effective search space: 9891682775208
effective search space used: 9891682775208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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