No.
Definition
Score (bits)
E Value
1 dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clon...
577
e-161
2 dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clon...
577
e-161
3 dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clon...
521
e-145
4 dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clon...
426
e-116
5 gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome...
254
3e-64
6 gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome...
254
3e-64
7 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
254
3e-64
8 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
254
3e-64
9 dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401
50
0.008
10 gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple...
48
0.033
11 ref|NM_018114.4| Homo sapiens DALR anticodon binding domain cont...
46
0.13
12 dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018
46
0.13
13 gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Canc...
46
0.13
14 gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydroge...
46
0.13
15 gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 o...
44
0.52
16 emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA
44
0.52
17 ref|XM_812643.1| Trypanosoma cruzi strain CL Brener gamma-tubuli...
42
2.1
18 emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom...
42
2.1
19 gb|AC159534.11| Medicago truncatula clone mth2-81a23, complete s...
42
2.1
20 gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, co...
42
2.1
21 gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
40
8.2
22 gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
40
8.2
23 gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1...
40
8.2
24 gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1)...
40
8.2
25 gb|CP000316.1| Polaromonas sp. JS666, complete genome
40
8.2
26 dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE20141...
40
8.2
27 ref|XM_373772.3| PREDICTED: Homo sapiens hypothetical LOC388459 ...
40
8.2
28 dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, se...
40
8.2
29 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
8.2
30 ref|NM_004414.5| Homo sapiens Down syndrome critical region gene...
40
8.2
31 gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn...
40
8.2
32 emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surroundi...
40
8.2
33 emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo...
40
8.2
34 dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP...
40
8.2
35 dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
8.2
36 gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co...
40
8.2
37 dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP...
40
8.2
38 dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
8.2
>gb|AC137922.3 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0046A04, complete sequence
Length = 141001
Score = 254 bits (128), Expect = 3e-64
Identities = 197/220 (89%)
Strand = Plus / Plus
Query: 86 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 82060 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 82119
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 82120 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 82179
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
|||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 82180 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 82239
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 82240 tccgcccacggctccgccctcgtccgcctcggcgacaccg 82279
Score = 109 bits (55), Expect = 1e-20
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 374 gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 82565 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 82624
Query: 434 gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
|||| ||||| || ||||||||| ||| |||||| | ||||||||
Sbjct: 82625 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 82671
Score = 99.6 bits (50), Expect = 1e-17
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 479 agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 83215 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 83274
Query: 539 gcatac 544
||||||
Sbjct: 83275 gcatac 83280
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 305 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||
Sbjct: 82394 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 82453
Query: 365 ggatc 369
|||||
Sbjct: 82454 ggatc 82458
Score = 60.0 bits (30), Expect = 9e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 547 ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 86734 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 86779
>gb|AC135558.6 | Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0007C02, complete sequence
Length = 148265
Score = 254 bits (128), Expect = 3e-64
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 86 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 14129 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 14070
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 14069 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 14010
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
|||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 14009 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 13950
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 13949 tccgcccacggctccgccctcgtccgcctcggcgacaccg 13910
Score = 109 bits (55), Expect = 1e-20
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 374 gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 13624 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 13565
Query: 434 gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
|||| ||||| || ||||||||| ||| |||||| | ||||||||
Sbjct: 13564 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 13518
Score = 99.6 bits (50), Expect = 1e-17
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 479 agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 12974 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 12915
Query: 539 gcatac 544
||||||
Sbjct: 12914 gcatac 12909
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 305 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||
Sbjct: 13795 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 13736
Query: 365 ggatc 369
|||||
Sbjct: 13735 ggatc 13731
Score = 60.0 bits (30), Expect = 9e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 547 ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 9455 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 9410
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 254 bits (128), Expect = 3e-64
Identities = 197/220 (89%)
Strand = Plus / Plus
Query: 86 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11880333 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11880392
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 11880393 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11880452
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
|||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11880453 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11880512
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11880513 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11880552
Score = 109 bits (55), Expect = 1e-20
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 374 gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 11880838 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 11880897
Query: 434 gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
|||| ||||| || ||||||||| ||| |||||| | ||||||||
Sbjct: 11880898 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 11880944
Score = 99.6 bits (50), Expect = 1e-17
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 479 agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 11881488 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 11881547
Query: 539 gcatac 544
||||||
Sbjct: 11881548 gcatac 11881553
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 305 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||
Sbjct: 11880667 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11880726
Query: 365 ggatc 369
|||||
Sbjct: 11880727 ggatc 11880731
Score = 60.0 bits (30), Expect = 9e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 547 ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 11885007 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 11885052
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 254 bits (128), Expect = 3e-64
Identities = 197/220 (89%)
Strand = Plus / Plus
Query: 86 atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 145
||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11958740 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11958799
Query: 146 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 205
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 11958800 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11958859
Query: 206 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 265
|||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11958860 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11958919
Query: 266 tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 305
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11958920 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11958959
Score = 109 bits (55), Expect = 1e-20
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 374 gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggccagcg 433
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 11959245 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggca 11959304
Query: 434 gaggctgcgccggttatctccaaggccctggaggacgtcctcatgag 480
|||| ||||| || ||||||||| ||| |||||| | ||||||||
Sbjct: 11959305 gaggtggcgccagtcatctccaagaacctagaggacattctcatgag 11959351
Score = 99.6 bits (50), Expect = 1e-17
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 479 agctctgggatgctaaatttgaaggagctctgtttgatcagtgggaaggcttcgtgggta 538
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 11959895 agctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggtta 11959954
Query: 539 gcatac 544
||||||
Sbjct: 11959955 gcatac 11959960
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 305 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 364
||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||
Sbjct: 11959074 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11959133
Query: 365 ggatc 369
|||||
Sbjct: 11959134 ggatc 11959138
Score = 60.0 bits (30), Expect = 9e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 547 ggatgtctattgtttgaatgccgatggatctcttttcgatgctgca 592
||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 11963414 ggatgtctattgtttgaatgctgatgggtctctattcgacgctgca 11963459
>dbj|AP000170.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
B2344F14-f50E8, segment 6/9, complete sequence
Length = 100000
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 279 ccgccctcgtccgcctcggc 298
||||||||||||||||||||
Sbjct: 16582 ccgccctcgtccgcctcggc 16601
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,173,651
Number of Sequences: 3902068
Number of extensions: 3173651
Number of successful extensions: 64781
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64010
Number of HSP's gapped (non-prelim): 771
length of query: 600
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 577
effective length of database: 17,143,297,704
effective search space: 9891682775208
effective search space used: 9891682775208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)