ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 252 bits (127), Expect = 1e-63 Identities = 265/311 (85%) Strand = Plus / Plus Query: 273 cgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggcctgttcgac 332 ||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||| Sbjct: 4287370 cgcgccgtcgcggtggccgcggacgtgtcggaccacgcgcaggtgtcgcgcctgttcgac 4287429 Query: 333 gcggcgcaggcggcgttcgggcgcgacctccacatcgtggtggcggccgccgggttccag 392 ||||||| || ||||||||| | ||||| ||| || ||||||| |||||||| | ||| Sbjct: 4287430 gcggcgcgggaggcgttcggcccggacctgcacgtcctggtggccgccgccggcgtgcag 4287489 Query: 393 gacgcggcgtacccggccatcgcggacaccgagccggagcagtgggaccgcgccttcggg 452 |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| Sbjct: 4287490 gacggcgcgtacccgcgcatcgcggacacgtcgccggagcagtgggaccgcgcgttcgcc 4287549 Query: 453 gtcaacgcgcgcggcacgttcctgtgctgccggcaggcggcccggcggctcgtcagaggc 512 || ||||||||||||||||||||||||||||| ||||||| |||||||| | | ||| Sbjct: 4287550 gtgaacgcgcgcggcacgttcctgtgctgccgcgaggcggcgcggcggctggcgcgcggc 4287609 Query: 513 ggcggcgggcggatagtcaccttctcgtcgtcgaacgtggggtcgctccggccaggctat 572 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 4287610 ggcggcgggcgcgtcgtcaccttctcgtcgtccaacgtggggtccctccggcccgggtac 4287669 Query: 573 ggcgcgtacgt 583 ||||||||||| Sbjct: 4287670 ggcgcgtacgt 4287680 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 123 ggcgctggcggcattggcgccgccgtcaccgcgcacctcgcatccctcggcgcccgcgtc 182 ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 4287235 ggcgccggcggcattggcgccgcggtcaccgcgcacctcgtgtccctcggagcccgcgtc 4287294 Query: 183 gtcgtcggttacatcggcgactcggcacccgcggaccagctggtcgcatccctcaacg 240 || ||||| ||| |||||||| | || ||||| || ||||| ||||| || ||||||| Sbjct: 4287295 gtggtcggctacgtcggcgacccagcccccgccgagcagctcgtcgcgtcgctcaacg 4287352
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 252 bits (127), Expect = 1e-63 Identities = 265/311 (85%) Strand = Plus / Plus Query: 273 cgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggcctgttcgac 332 ||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||| Sbjct: 132591 cgcgccgtcgcggtggccgcggacgtgtcggaccacgcgcaggtgtcgcgcctgttcgac 132650 Query: 333 gcggcgcaggcggcgttcgggcgcgacctccacatcgtggtggcggccgccgggttccag 392 ||||||| || ||||||||| | ||||| ||| || ||||||| |||||||| | ||| Sbjct: 132651 gcggcgcgggaggcgttcggcccggacctgcacgtcctggtggccgccgccggcgtgcag 132710 Query: 393 gacgcggcgtacccggccatcgcggacaccgagccggagcagtgggaccgcgccttcggg 452 |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| Sbjct: 132711 gacggcgcgtacccgcgcatcgcggacacgtcgccggagcagtgggaccgcgcgttcgcc 132770 Query: 453 gtcaacgcgcgcggcacgttcctgtgctgccggcaggcggcccggcggctcgtcagaggc 512 || ||||||||||||||||||||||||||||| ||||||| |||||||| | | ||| Sbjct: 132771 gtgaacgcgcgcggcacgttcctgtgctgccgcgaggcggcgcggcggctggcgcgcggc 132830 Query: 513 ggcggcgggcggatagtcaccttctcgtcgtcgaacgtggggtcgctccggccaggctat 572 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 132831 ggcggcgggcgcgtcgtcaccttctcgtcgtccaacgtggggtccctccggcccgggtac 132890 Query: 573 ggcgcgtacgt 583 ||||||||||| Sbjct: 132891 ggcgcgtacgt 132901 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 123 ggcgctggcggcattggcgccgccgtcaccgcgcacctcgcatccctcggcgcccgcgtc 182 ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 132456 ggcgccggcggcattggcgccgcggtcaccgcgcacctcgtgtccctcggagcccgcgtc 132515 Query: 183 gtcgtcggttacatcggcgactcggcacccgcggaccagctggtcgcatccctcaacg 240 || ||||| ||| |||||||| | || ||||| || ||||| ||||| || ||||||| Sbjct: 132516 gtggtcggctacgtcggcgacccagcccccgccgagcagctcgtcgcgtcgctcaacg 132573
>ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 209 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 267 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 268 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 318 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 447 ttcggggtcaacgcgcgcggcacgttcctgtgctgccg 484 ||||| || |||||||||||||| |||||||||||||| Sbjct: 391 ttcggcgtgaacgcgcgcggcaccttcctgtgctgccg 428
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 30496274 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 30496332 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 30496333 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 30496383 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 447 ttcggggtcaacgcgcgcggcacgttcctgtgctgccg 484 ||||| || |||||||||||||| |||||||||||||| Sbjct: 30496456 ttcggcgtgaacgcgcgcggcaccttcctgtgctgccg 30496493 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 34699226 gtggccatcgtgaccggcggcgcgagcggcatcggcg 34699262
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 27847 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 27905 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 27906 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 27956 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 447 ttcggggtcaacgcgcgcggcacgttcctgtgctgccg 484 ||||| || |||||||||||||| |||||||||||||| Sbjct: 28029 ttcggcgtgaacgcgcgcggcaccttcctgtgctgccg 28066
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 30587696 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 30587754 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 30587755 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 30587805 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 447 ttcggggtcaacgcgcgcggcacgttcctgtgctgccg 484 ||||| || |||||||||||||| |||||||||||||| Sbjct: 30587878 ttcggcgtgaacgcgcgcggcaccttcctgtgctgccg 30587915 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 34789298 gtggccatcgtgaccggcggcgcgagcggcatcggcg 34789334
>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full insert sequence Length = 1022 Score = 61.9 bits (31), Expect = 2e-06 Identities = 93/111 (83%), Gaps = 2/111 (1%) Strand = Plus / Plus Query: 265 gcgggccacgcgccgtcgcggtgtgtgcggacgtgtcggaccccgcgcaggtggagggc- 323 ||||||| || ||| |||||||| ||||||||||||||| | |||| ||| |||||| Sbjct: 313 gcgggccgcgggccatcgcggtggaggcggacgtgtcggacgcggcgcgggt-gagggcg 371 Query: 324 ctgttcgacgcggcgcaggcggcgttcgggcgcgacctccacatcgtggtg 374 ||||||||||||||| |||||||||||| |||| |||||||| ||||| Sbjct: 372 ctgttcgacgcggcggcggcggcgttcggcggcgagatccacatcctggtg 422 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 447 ttcggggtcaacgcgcgcggcacgttcctgtgctgccg 484 ||||| || |||||||||||||| |||||||||||||| Sbjct: 495 ttcggcgtgaacgcgcgcggcaccttcctgtgctgccg 532
>ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative short-chain alcohol dehydrogenase (OSJNBa0018F16.12), mRNA Length = 786 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 94 cacctcgcctccctcggcgcccgcgtcgtcgtc 126 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gtcaacgcgcgcggcacgttcctg 476 ||||||| |||||||||||||||| Sbjct: 382 gtcaacgtgcgcggcacgttcctg 405
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 28749 cacctcgcctccctcggcgcccgcgtcgtcgtc 28781 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gtcaacgcgcgcggcacgttcctg 476 ||||||| |||||||||||||||| Sbjct: 29037 gtcaacgtgcgcggcacgttcctg 29060
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 16149860 cacctcgcctccctcggcgcccgcgtcgtcgtc 16149892 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gtcaacgcgcgcggcacgttcctg 476 ||||||| |||||||||||||||| Sbjct: 16150148 gtcaacgtgcgcggcacgttcctg 16150171
>dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118E15, full insert sequence Length = 1184 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 771 cacctcgcctccctcggcgcccgcgtcgtcgtc 739 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 gtcaacgcgcgcggcacgttcctg 476 ||||||| |||||||||||||||| Sbjct: 483 gtcaacgtgcgcggcacgttcctg 460
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgcccgcgtcgtcgtc 188 |||||||| |||||||||||||||||||||||| Sbjct: 16158101 cacctcgcctccctcggcgcccgcgtcgtcgtc 16158133 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gtcaacgcgcgcggcacgttcctg 476 ||||||| |||||||||||||||| Sbjct: 16158389 gtcaacgtgcgcggcacgttcctg 16158412
>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence and transposon Tntsa, complete sequence Length = 38756 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgc 127 ||||||||||||||||||||||| Sbjct: 31085 gtggccatcgtgaccggtggcgc 31107 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 gtggccatcgtgaccggtggcgc 127 ||||||||||||||||||||||| Sbjct: 24046 gtggccatcgtgaccggtggcgc 24024
>ref|NM_001033326.1| Mus musculus dehydrogenase/reductase (SDR family) X chromosome (Dhrsx), mRNA Length = 1859 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 229 ggccgcgtggccatcgtgaccgg 251
>ref|XM_824036.1| Trypanosoma brucei TREU927 beta-adaptin 3 (Tb11.01.2420) partial mRNA Length = 2757 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 145 ccgtcaccgcgcacctcgcatcc 167 ||||||||||||||||||||||| Sbjct: 2144 ccgtcaccgcgcacctcgcatcc 2122
>emb|AJ296079.1|MMU296079 Mus musculus mRNA for SCAD family protein Length = 852 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 139 ggccgcgtggccatcgtgaccgg 161
>dbj|AK157461.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830217H11 product:dehydrogenase/reductase (SDR family) X chromosome, full insert sequence Length = 1859 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 229 ggccgcgtggccatcgtgaccgg 251
>gb|BC046917.1| Mus musculus, clone IMAGE:6477329, mRNA Length = 979 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 99 ggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||||||| Sbjct: 268 ggccgcgtggccatcgtgaccgg 290
>gb|DQ058415.1| Rhizobium etli strain 8C-3 plasmid clone REB01, partial sequence Length = 118287 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 461 gcgcggcacgttcctgtgctgccggcaggc 490 |||||||||| |||| |||||||||||||| Sbjct: 56964 gcgcggcacgctcctttgctgccggcaggc 56993
>ref|XM_478715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 438 gaccgcgccttcggggtcaacgcgcgcggcacgttcctgtgc 479 |||||| |||||| |||||| |||||||| ||||||||||| Sbjct: 376 gaccgcaccttcgccgtcaacacgcgcggcgcgttcctgtgc 417
>ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 71 ccggccgcgtggccatcgtgac 92
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 ggcggcgttcgggcgcgacctc 362 |||||||||||||||||||||| Sbjct: 8419 ggcggcgttcgggcgcgacctc 8398
>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence Length = 371254 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 461 gcgcggcacgttcctgtgctgccggcaggc 490 |||||||||| |||| |||||||||||||| Sbjct: 269851 gcgcggcacgctcctttgctgccggcaggc 269822 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 25908 cggcgcccgcgtcgtcgtcg 25927
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 438 gaccgcgccttcggggtcaacgcgcgcggcacgttcctgtgc 479 |||||| |||||| |||||| |||||||| ||||||||||| Sbjct: 22363092 gaccgcaccttcgccgtcaacacgcgcggcgcgttcctgtgc 22363133 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 3746174 ccggccgcgtggccatcgtgac 3746153 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 3744114 ccggccgcgtggccatcgtcaccgg 3744138 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 20879323 cgtacccggccatcgccgacaccg 20879300
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 438 gaccgcgccttcggggtcaacgcgcgcggcacgttcctgtgc 479 |||||| |||||| |||||| |||||||| ||||||||||| Sbjct: 168338 gaccgcaccttcgccgtcaacacgcgcggcgcgttcctgtgc 168379
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 438 gaccgcgccttcggggtcaacgcgcgcggcacgttcctgtgc 479 |||||| |||||| |||||| |||||||| ||||||||||| Sbjct: 24159 gaccgcaccttcgccgtcaacacgcgcggcgcgttcctgtgc 24200
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgac 118 |||||||||||||||||||||| Sbjct: 90525 ccggccgcgtggccatcgtgac 90504 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 88465 ccggccgcgtggccatcgtcaccgg 88489
>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 134213 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 244 ccgcggccgcaggcagctccgg 265 |||||||||||||||||||||| Sbjct: 61305 ccgcggccgcaggcagctccgg 61326
>ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 783 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 13 gtggccatcgtgaccggcggcgcgagcggcatcggcg 49
>ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1369 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 385 gtggccatcgtgaccggcggcgcgagcggcatcggcg 421
>ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 786 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 ccggccgcgtggccatcgtgaccgg 121 ||||||||||||||||||| ||||| Sbjct: 53 ccggccgcgtggccatcgtcaccgg 77
>gb|BT016809.1| Zea mays clone Contig642 mRNA sequence Length = 1709 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 ggcggccgccgggttccaggacgcg 398 |||||||||||||| |||||||||| Sbjct: 895 ggcggccgccgggtaccaggacgcg 919
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 163424 gtggccatcgtgaccggcggcgcgagcggcatcggcg 163388
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 ccggccgcgtggccatcgtgaccgg 121 |||||||||||||| |||||||||| Sbjct: 979398 ccggccgcgtggccgtcgtgaccgg 979374
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 156943 gtggccatcgtgaccggcggcgcgagcggcatcggcg 156979
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tcggcgcccgcgtcgtcgtcg 189 ||||||||||||||||||||| Sbjct: 233027 tcggcgcccgcgtcgtcgtcg 233007
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 cgcggcgcaggcggcgttcgg 352 ||||||||||||||||||||| Sbjct: 240155 cgcggcgcaggcggcgttcgg 240175
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tcaacgcggccgcggccgcag 255 ||||||||||||||||||||| Sbjct: 2106972 tcaacgcggccgcggccgcag 2106952 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acgcggccgcggccgcaggc 257 |||||||||||||||||||| Sbjct: 1156564 acgcggccgcggccgcaggc 1156545
>dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full insert sequence Length = 1042 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gtggccatcgtgaccggtggcgctggcggcattggcg 141 ||||||||||||||||| ||||| ||||||| |||| Sbjct: 58 gtggccatcgtgaccggcggcgcgagcggcatcggcg 94
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 422 cgagccggagcagtgggaccgcgccttc 449 ||||||| ||| |||||||||||||||| Sbjct: 3431846 cgagccgcagctgtgggaccgcgccttc 3431819
>ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 948 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 tcgtcagaggcggcggcggg 521 |||||||||||||||||||| Sbjct: 425 tcgtcagaggcggcggcggg 406
>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence Length = 190912 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 172031 cggcgcccgcgtcgtcgtcg 172012
>ref|NM_185838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 311 cgtacccggccatcgccgacaccg 334
>gb|BT019080.1| Zea mays clone Contig662.F mRNA sequence Length = 1126 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcgacgcggcgcaggcggcg 347 |||||||||||||||||||| Sbjct: 130 tcgacgcggcgcaggcggcg 111
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gcggcattggcgccgccgtc 149 |||||||||||||||||||| Sbjct: 3358869 gcggcattggcgccgccgtc 3358850
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBb0061M13, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ctcgtcagaggcggcggcgg 520 |||||||||||||||||||| Sbjct: 110631 ctcgtcagaggcggcggcgg 110612
>ref|XM_419272.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1110064P04 (LOC421194), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggaccagctggtcgcatccc 234 |||||||||||||||||||| Sbjct: 111 ggaccagctggtcgcatccc 92
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 380668 gttcgacgcggcgcaggcgg 380649
>ref|XM_979437.1| PREDICTED: Mus musculus similar to COMM domain-containing protein 7 (LOC674161), mRNA Length = 3824 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 701 gcggccgccgggttccagga 682
>ref|XM_754832.1| Ustilago maydis 521 hypothetical protein (UM03778.1) partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cacctcgcatccctcggcgc 175 |||||||||||||||||||| Sbjct: 459 cacctcgcatccctcggcgc 478
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 ggtcaacgcgcgcggcacgttcctgtgc 479 ||||||||||||||||| ||||||||| Sbjct: 4062910 ggtcaacgcgcgcggcagtttcctgtgc 4062883 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgcaggcagctccggcgggc 270 |||||||||||||||||||| Sbjct: 1862486 cgcaggcagctccggcgggc 1862505 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1475765 tggcgctggcggcattggcg 1475784
>gb|AY330188.1| Euprymna scolopes Hox class homeodomain-containing protein Antp mRNA, partial sequence Length = 834 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 caacgcggccgcggccgcag 255 |||||||||||||||||||| Sbjct: 246 caacgcggccgcggccgcag 265
>emb|AL157395.17| Human DNA sequence from clone RP11-414H17 on chromosome 10 Contains the 5' end of the IL2RA gene for interleukin 2 receptor, alpha (CD25,IL2R,TCGFR), a ribosomal protein L32 (RPL32) pseudogene, the gene for splicing factor (45kD) (SPF45)(MGC14439), the 5' end of the PFKFB3 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, four novel genes and five CpG islands, complete sequence Length = 174839 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 cagaggcggcggcgggcgga 525 |||||||||||||||||||| Sbjct: 33510 cagaggcggcggcgggcgga 33491
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cggtggcgctggcggcattg 138 |||||||||||||||||||| Sbjct: 1830607 cggtggcgctggcggcattg 1830626
>emb|AL121917.20|HSJ309F20 Human DNA sequence from clone RP1-309F20 on chromosome 20 Contains part of the GNAS complex locus, a novel gene and a CpG island, complete sequence Length = 42807 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||||||| |||||||||||| Sbjct: 30432 cctcggcgccctcgtcgtcgtcgg 30409
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 139525 cggcgcccgcgtcgtcgtcg 139544
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 1699850 gttcgacgcggcgcaggcgg 1699831
>gb|BC039322.1| Homo sapiens RNA binding motif protein 17, mRNA (cDNA clone MGC:43415 IMAGE:5267008), complete cds Length = 2063 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 cagaggcggcggcgggcgga 525 |||||||||||||||||||| Sbjct: 70 cagaggcggcggcgggcgga 51
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gcacctcgcatccctcggcg 174 |||||||||||||||||||| Sbjct: 8297 gcacctcgcatccctcggcg 8316
>gb|AE005676.1| Caulobacter crescentus CB15 section 2 of 359 of the complete genome Length = 10672 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcgacgcggcgcaggcggcg 347 |||||||||||||||||||| Sbjct: 9174 tcgacgcggcgcaggcggcg 9155
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggcattggcgccgccgtcaccgcg 155 ||||||||||||||| |||||||| Sbjct: 110890 ggcattggcgccgccctcaccgcg 110913
>gb|AE011756.1| Xanthomonas axonopodis pv. citri str. 306, section 134 of 469 of the complete genome Length = 12738 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 7370 tggcgctggcggcattggcg 7389
>gb|AE012490.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 398 of 460 of the complete genome Length = 11621 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 117 accggtggcgctggcggcattggcgccgccgt 148 |||||||||| ||||||||||||||||||| Sbjct: 6892 accggtggcgacagcggcattggcgccgccgt 6923
>dbj|AP003923.1| Mus musculus genomic DNA, chromosome 2, clone:B478c13, complete sequence Length = 171634 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 55076 gcggccgccgggttccagga 55057
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ggcgctggcggcattggcgc 142 |||||||||||||||||||| Sbjct: 2439251 ggcgctggcggcattggcgc 2439232
>emb|CR523356.1| Gallus gallus finished cDNA, clone ChEST581m16 Length = 1059 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggaccagctggtcgcatccc 234 |||||||||||||||||||| Sbjct: 58 ggaccagctggtcgcatccc 39
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 ggcggccgccgggttccaggacgcggcg 401 |||||||||||| ||||||| ||||||| Sbjct: 2712344 ggcggccgccggtttccagggcgcggcg 2712317
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 117 accggtggcgctggcggcattggcgccgccgt 148 |||||||||| ||||||||||||||||||| Sbjct: 4455820 accggtggcgacagcggcattggcgccgccgt 4455851
>gb|AY517643.1| Chlamydomonas reinhardtii phosphoenolpyruvate carboxylase (Ppc2) mRNA, complete cds Length = 4776 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggcattggcgccgccgtcaccgcg 155 ||||||||||||||| |||||||| Sbjct: 3223 ggcattggcgccgccctcaccgcg 3246
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 53649 gccgccgggttcctggacgcggcg 53672
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gttcgacgcggcgcaggcgg 345 |||||||||||||||||||| Sbjct: 1150158 gttcgacgcggcgcaggcgg 1150139
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 tcgtcagaggcggcggcggg 521 |||||||||||||||||||| Sbjct: 23944950 tcgtcagaggcggcggcggg 23944931
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ctcgtcagaggcggcggcgg 520 |||||||||||||||||||| Sbjct: 10941427 ctcgtcagaggcggcggcgg 10941408
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 23628845 cggcgcccgcgtcgtcgtcg 23628864 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 6978964 cggcgcccgcgtcgtcgtcg 6978945
>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2 Length = 230573 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cgccgccgtcaccgcgcacctcgc 163 |||||||||| ||||||||||||| Sbjct: 224966 cgccgccgtcgccgcgcacctcgc 224943
>gb|AF246983.1|AF246983 Homo sapiens GNAS1 gene, exon 1A, complete sequence, alternatively spliced Length = 3371 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||||||| |||||||||||| Sbjct: 2665 cctcggcgccctcgtcgtcgtcgg 2642
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccctcaacgcggccgcggcc 251 |||||||||||||||||||| Sbjct: 4152750 ccctcaacgcggccgcggcc 4152731
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ccgccgggttccaggacgcg 398 |||||||||||||||||||| Sbjct: 3503958 ccgccgggttccaggacgcg 3503977 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 gccggcaggcggcccggcggctcg 504 ||||||||||||||||||| |||| Sbjct: 2853409 gccggcaggcggcccggcgactcg 2853432
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 90113 cgtacccggccatcgccgacaccg 90090
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 72586 cggcgcccgcgtcgtcgtcg 72567
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ggggtcgctccggccaggct 570 |||||||||||||||||||| Sbjct: 463845 ggggtcgctccggccaggct 463864
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cgccgccgtcaccgcgcacctcgc 163 |||||||||| ||||||||||||| Sbjct: 2283451 cgccgccgtcgccgcgcacctcgc 2283428
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ggcgccgccgtcaccgcgcacctc 161 ||||||||||||||||| |||||| Sbjct: 3385935 ggcgccgccgtcaccgctcacctc 3385958
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1131_E05 Length = 122216 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 7238 cgtacccggccatcgccgacaccg 7215
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cggcgcccgcgtcgtcgtcg 189 |||||||||||||||||||| Sbjct: 69945 cggcgcccgcgtcgtcgtcg 69964
>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0419H09 Length = 143533 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 tcgtcagaggcggcggcggg 521 |||||||||||||||||||| Sbjct: 78101 tcgtcagaggcggcggcggg 78082
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggtggcgctggcggcattgg 139 |||||||||||||||||||| Sbjct: 5475817 ggtggcgctggcggcattgg 5475798
>dbj|AK064277.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F07, full insert sequence Length = 1596 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 cgtacccggccatcgcggacaccg 423 |||||||||||||||| ||||||| Sbjct: 355 cgtacccggccatcgccgacaccg 378
>gb|AF158096.1|AF158096 Pseudorabies virus early envelope protein (prv43) gene, complete cds Length = 1356 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 1013 gccgccgggttcctggacgcggcg 1036
>dbj|AP005858.1| Mus musculus genomic DNA, chromosome 2 clone:B478C13, complete sequence Length = 174714 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gcggccgccgggttccagga 394 |||||||||||||||||||| Sbjct: 55076 gcggccgccgggttccagga 55057
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tgttcgacgcggcgcaggcg 344 |||||||||||||||||||| Sbjct: 1395857 tgttcgacgcggcgcaggcg 1395838
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 cggccatcgcggacaccgag 425 |||||||||||||||||||| Sbjct: 3534872 cggccatcgcggacaccgag 3534891
>gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosynthetic gene cluster, complete sequence Length = 25306 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 cctcggcgcccgcgtcgtcgtcgg 190 ||||||| |||||||||||||||| Sbjct: 20445 cctcggcccccgcgtcgtcgtcgg 20468
>gb|AF063448.1|AF063448 Xanthomonas citri regulatory protein HrpX (hrpX) gene, complete cds Length = 1853 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1030 tggcgctggcggcattggcg 1049
>gb|U27480.1|SHU27480 Suid herpesvirus 1 Prv43 mRNA, partial cds Length = 458 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 119 gccgccgggttcctggacgcggcg 142
>gb|U45888.1|XCU45888 Xanthomonas campestris pv. vesicatoria HrpXv (hrpXv) gene, complete cds Length = 1806 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 1078 tggcgctggcggcattggcg 1097
>gb|M26396.1|CVNRUBISCO Chromatium vinosum ribulose 1,5-bisphosphate carbpxylase/oxygenase large and small subunits (rbcA and rbcB) genes, complete cds Length = 2727 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 acccggccatcgcggacaccgagccgga 430 |||||||||||| | ||||||||||||| Sbjct: 2133 acccggccatcgagcacaccgagccgga 2160
>gb|M77761.1|SH1PRV Pseudorabies virus Prv43 protein (prv43) gene, complete cds Length = 1361 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgccgggttccaggacgcggcg 401 ||||||||||||| |||||||||| Sbjct: 1018 gccgccgggttcctggacgcggcg 1041
>dbj|AB011449.1| Xanthomonas citri hrpXct gene, complete cds Length = 1431 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tggcgctggcggcattggcg 141 |||||||||||||||||||| Sbjct: 839 tggcgctggcggcattggcg 858 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,786,105 Number of Sequences: 3902068 Number of extensions: 3786105 Number of successful extensions: 90003 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 83584 Number of HSP's gapped (non-prelim): 6420 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
