ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 79 1e-14
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 72 1e-12
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 58 2e-08
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 40 0.004
5GLYA_THEVO (Q97CQ5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 33 0.62
6GLYA_PICTO (Q6L1F6) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 4.0
7PRIM_BPT3 (P20315) DNA primase/helicase (EC 2.7.7.-) 30 6.8
8LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL) 30 6.8
9LIPS_RAT (P15304) Hormone-sensitive lipase (EC 3.1.1.79) (HSL) 30 6.8
10GLYA_THEAC (Q9HI38) Serine hydroxymethyltransferase (EC 2.1.2.1)... 29 8.9

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
 Frame = +2

Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR- 319
           F FGDS+ D GNNN L   L     P YG+DF  G+  GRF NGR  +D I   +G+   
Sbjct: 127 FFFGDSIFDTGNNNNLDTKLKCNYRP-YGMDFPMGVATGRFSNGRVASDYISKYLGVKEI 185

Query: 320 PPAFLDPSVDETVISK-----SGLNYASGG-GILNETSSLFIQRFSLYKQIELFQGTQAF 481
            PA++D  + +    +     +G+++ASGG G L +TS  + +  ++  Q+  FQ  +  
Sbjct: 186 VPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSESW-KVTTMLDQLTYFQDYKKR 244

Query: 482 MREKIGQAAADKLFGEAYYVVAMGANDFINNY 577
           M++ +G+    K+  +   +V  G+ND I  Y
Sbjct: 245 MKKLVGKKKTKKIVSKGAAIVVAGSNDLIYTY 276



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
 Frame = +2

Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR- 319
           F FGDS+ D GNNN L   +     P YG+DF   +  GRF NG   +D +   MG+   
Sbjct: 206 FFFGDSVFDTGNNNNLETKIKSNYRP-YGMDFKFRVATGRFSNGMVASDYLAKYMGVKEI 264

Query: 320 PPAFLDPSVDETVISKSGLNYASGGGILNETSSLFIQRFSLYKQIELFQG-----TQAFM 484
            PA+LDP +    +  +G+++ASGG   N T+S       +  Q+  FQ       +   
Sbjct: 265 VPAYLDPKIQPNDL-LTGVSFASGGAGYNPTTSEAANAIPMLDQLTYFQDYIEKVNRLVR 323

Query: 485 REK-----IGQAAADKLFGEAYYVVAMGANDFINNY 577
           +EK      G    ++L  +   +V  G+ND I  Y
Sbjct: 324 QEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITY 359



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
 Frame = +2

Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRP 322
           F FGDS SD G    L+ +  +A  P     FGS  P GR+C+GR V D I + +GLP  
Sbjct: 32  FNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGS--PAGRYCDGRLVIDFIAESLGLPYL 86

Query: 323 PAFLDPSVDETVISKSGLNYASGGGILNETSSLFIQR----FSL---YKQIELFQGTQAF 481
            AFLD SV        G N+A+ G  +   +S   Q     FSL   + Q   F      
Sbjct: 87  SAFLD-SVGSNF--SHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQT 143

Query: 482 MREKIG----QAAADKLFGEAYYVVAMGANDFINNY 577
           +R + G           F +A Y   +G ND    Y
Sbjct: 144 VRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGY 179



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
 Frame = +2

Query: 143 FIFGDSLSDVGNNNYLTKSLARAAL-PWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR 319
           F FGDS SD G      K+ A   L P YG  F      GR+ +GR + D I +   LP 
Sbjct: 36  FNFGDSNSDTGG-----KAAAFYPLNPPYGETFFH-RSTGRYSDGRLIIDFIAESFNLP- 88

Query: 320 PPAFLDPSVDETVIS-KSGLNYASGGGILNETSSLF-----IQRFSL---YKQIELFQGT 472
              +L P +     + K G ++A+ G  +   +++         F L   Y Q   F   
Sbjct: 89  ---YLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGFSPFYLDVQYSQFRQFIPR 145

Query: 473 QAFMREKIGQAA----ADKLFGEAYYVVAMGANDFINNYL 580
             F+RE  G  A     +  F +A Y   +G ND    +L
Sbjct: 146 SQFIRETGGIFAELVPEEYYFEKALYTFDIGQNDLTEGFL 185



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>GLYA_THEVO (Q97CQ5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 426

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +2

Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325
           +FGDS++ + + N ++       +      +  G+P+ R+  G    D+I DK       
Sbjct: 19  LFGDSVALIASENVMSPLAREVMISDLESRYAEGLPHHRYYQGNNFVDLIEDKTNELLSK 78

Query: 326 AFLDPSVDETVISKSGLNYAS 388
            F     D   IS +  N A+
Sbjct: 79  LFKTEQTDPRPISGTNANSAA 99



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>GLYA_PICTO (Q6L1F6) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 433

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = +2

Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325
           +F +S+  + + N ++       L   G  +  G+P+ R+  G    D+I DK       
Sbjct: 25  LFRESIPLIASENIMSPLAMEMLLTDLGFRYAEGLPHHRYYQGNEYVDVIEDKTTELGKR 84

Query: 326 AFLDPSVDETVISKSGLNYA 385
            F   + D   +S +  N A
Sbjct: 85  LFNSKTFDPRPLSGTNANMA 104



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>PRIM_BPT3 (P20315) DNA primase/helicase (EC 2.7.7.-)|
          Length = 566

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = +2

Query: 239 GSGMPNGRFCNGRTVADIIGDKMGLPRPPAFLDPSVDETVISKSGLNYASGGGILNETSS 418
           GSGM    F   + +A   G +MG     A L+ SV++T+    GLN        +E   
Sbjct: 312 GSGMGKSTFVRQQALA--WGKRMGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKK 369

Query: 419 LFIQ--RFSLYKQIELFQGTQAFMREKIGQAAADKLFGE-AYYVVAMGANDFINNYL 580
              +  RF  +   ELF      + +   +A AD+L  + AY    +G +  + +++
Sbjct: 370 AIAEDGRFDEWYD-ELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHI 425



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>LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 759

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 162 SESPKMNCTTSPWARPRSRASVRAMASGGFLSQ 64
           SE P++     P   PRSRA V  +  GGF++Q
Sbjct: 324 SEGPRLELRPRPHQAPRSRALVVHIHGGGFVAQ 356



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>LIPS_RAT (P15304) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 1068

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 162 SESPKMNCTTSPWARPRSRASVRAMASGGFLSQ 64
           SE P++     P   PRSRA V  +  GGF++Q
Sbjct: 624 SEGPRLELRPRPQQAPRSRALVVHIHGGGFVAQ 656



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>GLYA_THEAC (Q9HI38) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 426

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
 Frame = +2

Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325
           +FG+ ++ + + N ++       +      +  G+P+ R+  G    D+I D+       
Sbjct: 19  MFGEGIALIASENVMSPLAKEVMISDLESRYAEGLPHHRYYQGNYYVDLIEDRTNELLSK 78

Query: 326 AFLDPSVDETVISKSGLNYA-----SGGGILNETSSL 421
            F     D   IS +  N A     +G G L  T SL
Sbjct: 79  LFRTSQTDPRPISGTNANSAAIYALAGPGDLVATPSL 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,588,089
Number of Sequences: 219361
Number of extensions: 1162371
Number of successful extensions: 4178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4174
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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