Clone Name | bart38f01 |
---|---|
Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 78.6 bits (192), Expect = 1e-14 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Frame = +2 Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR- 319 F FGDS+ D GNNN L L P YG+DF G+ GRF NGR +D I +G+ Sbjct: 127 FFFGDSIFDTGNNNNLDTKLKCNYRP-YGMDFPMGVATGRFSNGRVASDYISKYLGVKEI 185 Query: 320 PPAFLDPSVDETVISK-----SGLNYASGG-GILNETSSLFIQRFSLYKQIELFQGTQAF 481 PA++D + + + +G+++ASGG G L +TS + + ++ Q+ FQ + Sbjct: 186 VPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSESW-KVTTMLDQLTYFQDYKKR 244 Query: 482 MREKIGQAAADKLFGEAYYVVAMGANDFINNY 577 M++ +G+ K+ + +V G+ND I Y Sbjct: 245 MKKLVGKKKTKKIVSKGAAIVVAGSNDLIYTY 276
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 72.0 bits (175), Expect = 1e-12 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Frame = +2 Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR- 319 F FGDS+ D GNNN L + P YG+DF + GRF NG +D + MG+ Sbjct: 206 FFFGDSVFDTGNNNNLETKIKSNYRP-YGMDFKFRVATGRFSNGMVASDYLAKYMGVKEI 264 Query: 320 PPAFLDPSVDETVISKSGLNYASGGGILNETSSLFIQRFSLYKQIELFQG-----TQAFM 484 PA+LDP + + +G+++ASGG N T+S + Q+ FQ + Sbjct: 265 VPAYLDPKIQPNDL-LTGVSFASGGAGYNPTTSEAANAIPMLDQLTYFQDYIEKVNRLVR 323 Query: 485 REK-----IGQAAADKLFGEAYYVVAMGANDFINNY 577 +EK G ++L + +V G+ND I Y Sbjct: 324 QEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITY 359
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 57.8 bits (138), Expect = 2e-08 Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Frame = +2 Query: 143 FIFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRP 322 F FGDS SD G L+ + +A P FGS P GR+C+GR V D I + +GLP Sbjct: 32 FNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGS--PAGRYCDGRLVIDFIAESLGLPYL 86 Query: 323 PAFLDPSVDETVISKSGLNYASGGGILNETSSLFIQR----FSL---YKQIELFQGTQAF 481 AFLD SV G N+A+ G + +S Q FSL + Q F Sbjct: 87 SAFLD-SVGSNF--SHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQT 143 Query: 482 MREKIG----QAAADKLFGEAYYVVAMGANDFINNY 577 +R + G F +A Y +G ND Y Sbjct: 144 VRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGY 179
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 40.4 bits (93), Expect = 0.004 Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Frame = +2 Query: 143 FIFGDSLSDVGNNNYLTKSLARAAL-PWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPR 319 F FGDS SD G K+ A L P YG F GR+ +GR + D I + LP Sbjct: 36 FNFGDSNSDTGG-----KAAAFYPLNPPYGETFFH-RSTGRYSDGRLIIDFIAESFNLP- 88 Query: 320 PPAFLDPSVDETVIS-KSGLNYASGGGILNETSSLF-----IQRFSL---YKQIELFQGT 472 +L P + + K G ++A+ G + +++ F L Y Q F Sbjct: 89 ---YLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGFSPFYLDVQYSQFRQFIPR 145 Query: 473 QAFMREKIGQAA----ADKLFGEAYYVVAMGANDFINNYL 580 F+RE G A + F +A Y +G ND +L Sbjct: 146 SQFIRETGGIFAELVPEEYYFEKALYTFDIGQNDLTEGFL 185
>GLYA_THEVO (Q97CQ5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 426 Score = 33.1 bits (74), Expect = 0.62 Identities = 19/81 (23%), Positives = 34/81 (41%) Frame = +2 Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325 +FGDS++ + + N ++ + + G+P+ R+ G D+I DK Sbjct: 19 LFGDSVALIASENVMSPLAREVMISDLESRYAEGLPHHRYYQGNNFVDLIEDKTNELLSK 78 Query: 326 AFLDPSVDETVISKSGLNYAS 388 F D IS + N A+ Sbjct: 79 LFKTEQTDPRPISGTNANSAA 99
>GLYA_PICTO (Q6L1F6) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 433 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/80 (22%), Positives = 33/80 (41%) Frame = +2 Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325 +F +S+ + + N ++ L G + G+P+ R+ G D+I DK Sbjct: 25 LFRESIPLIASENIMSPLAMEMLLTDLGFRYAEGLPHHRYYQGNEYVDVIEDKTTELGKR 84 Query: 326 AFLDPSVDETVISKSGLNYA 385 F + D +S + N A Sbjct: 85 LFNSKTFDPRPLSGTNANMA 104
>PRIM_BPT3 (P20315) DNA primase/helicase (EC 2.7.7.-)| Length = 566 Score = 29.6 bits (65), Expect = 6.8 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Frame = +2 Query: 239 GSGMPNGRFCNGRTVADIIGDKMGLPRPPAFLDPSVDETVISKSGLNYASGGGILNETSS 418 GSGM F + +A G +MG A L+ SV++T+ GLN +E Sbjct: 312 GSGMGKSTFVRQQALA--WGKRMGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKK 369 Query: 419 LFIQ--RFSLYKQIELFQGTQAFMREKIGQAAADKLFGE-AYYVVAMGANDFINNYL 580 + RF + ELF + + +A AD+L + AY +G + + +++ Sbjct: 370 AIAEDGRFDEWYD-ELFGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHI 425
>LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)| Length = 759 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 162 SESPKMNCTTSPWARPRSRASVRAMASGGFLSQ 64 SE P++ P PRSRA V + GGF++Q Sbjct: 324 SEGPRLELRPRPHQAPRSRALVVHIHGGGFVAQ 356
>LIPS_RAT (P15304) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)| Length = 1068 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 162 SESPKMNCTTSPWARPRSRASVRAMASGGFLSQ 64 SE P++ P PRSRA V + GGF++Q Sbjct: 624 SEGPRLELRPRPQQAPRSRALVVHIHGGGFVAQ 656
>GLYA_THEAC (Q9HI38) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 426 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Frame = +2 Query: 146 IFGDSLSDVGNNNYLTKSLARAALPWYGIDFGSGMPNGRFCNGRTVADIIGDKMGLPRPP 325 +FG+ ++ + + N ++ + + G+P+ R+ G D+I D+ Sbjct: 19 MFGEGIALIASENVMSPLAKEVMISDLESRYAEGLPHHRYYQGNYYVDLIEDRTNELLSK 78 Query: 326 AFLDPSVDETVISKSGLNYA-----SGGGILNETSSL 421 F D IS + N A +G G L T SL Sbjct: 79 LFRTSQTDPRPISGTNANSAAIYALAGPGDLVATPSL 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,588,089 Number of Sequences: 219361 Number of extensions: 1162371 Number of successful extensions: 4178 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4174 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)