ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 313 bits (158), Expect = 4e-82 Identities = 265/300 (88%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 127 cggcgacgtggtgcagttcatcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 6746988 cggcgacgtggtgcagttcatcttcggcgactcgctgtcggacgtgggcaacaacgacta 6747047 Query: 187 tctgaccaagagcctcgcgcgcgcggcgctgccgtggtacggcatcgacttcggcagcgg 246 ||||||||||||||||| ||||| ||||| || ||||||||||||||||||| || ||| Sbjct: 6747048 cctgaccaagagcctcgcccgcgccgcgctcccctggtacggcatcgacttcgacaccgg 6747107 Query: 247 catgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcggcgacaagat 306 ||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 6747108 catgcccaacggccgcttctgcaacggccgcaccgtcgccgacatcgtcggcgacaagat 6747167 Query: 307 gggcctcccgcggccgccggcgttcctggacccgtcggttgacgagactgtcatctccaa 366 ||||||||| || || || || ||||| ||||| || | ||||||| |||||| ||| Sbjct: 6747168 gggcctcccccgcccacccgccttcctcgacccttccctcgacgagaacgtcatcctcaa 6747227 Query: 367 gagcggcctcaactatgcgtc---cggcggcggcatcctcaacgagacctcgtccctctt 423 | ||||| |||||| || || ||||||||||||||||||||||||||| |||||||| Sbjct: 6747228 gcgcggcgtcaacttcgcctccggcggcggcggcatcctcaacgagacctcctccctctt 6747287 Score = 228 bits (115), Expect = 2e-56 Identities = 145/155 (93%) Strand = Plus / Plus Query: 425 atacagaggttctcactgtacaagcagatcgagctgttccaggggacgcaggcgttcatg 484 |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 6747794 atacagagattctcgctgtacaagcagatcgagctgttccaggggacgcaggagttcatg 6747853 Query: 485 cgggagaagatagggcaggcggcggcggacaagctgttcggcgaggcctactacgtggtg 544 ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6747854 cggcgcaaggtcgggaaggcggcggcggacaagctgttcggcgaggcctactacgtggtg 6747913 Query: 545 gccatgggcgccaacgacttcatcaacaactacct 579 || |||||||||||||||||||||||||||||||| Sbjct: 6747914 gcgatgggcgccaacgacttcatcaacaactacct 6747948 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||||||| |||| ||||| || ||||||||||| Sbjct: 8247878 catcttcggcgactcgatgtccgacgtcgggaacaacaacta 8247919 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 gcgccaacgacttcatcaacaact 575 ||||| |||||||||||||||||| Sbjct: 21494208 gcgccgacgacttcatcaacaact 21494231 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 ttcatcttcggcgactcgctgtcggacg 170 |||| |||||||||||||||||| |||| Sbjct: 19521949 ttcagcttcggcgactcgctgtccgacg 19521922
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 313 bits (158), Expect = 4e-82 Identities = 265/300 (88%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 127 cggcgacgtggtgcagttcatcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 76667 cggcgacgtggtgcagttcatcttcggcgactcgctgtcggacgtgggcaacaacgacta 76726 Query: 187 tctgaccaagagcctcgcgcgcgcggcgctgccgtggtacggcatcgacttcggcagcgg 246 ||||||||||||||||| ||||| ||||| || ||||||||||||||||||| || ||| Sbjct: 76727 cctgaccaagagcctcgcccgcgccgcgctcccctggtacggcatcgacttcgacaccgg 76786 Query: 247 catgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcggcgacaagat 306 ||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 76787 catgcccaacggccgcttctgcaacggccgcaccgtcgccgacatcgtcggcgacaagat 76846 Query: 307 gggcctcccgcggccgccggcgttcctggacccgtcggttgacgagactgtcatctccaa 366 ||||||||| || || || || ||||| ||||| || | ||||||| |||||| ||| Sbjct: 76847 gggcctcccccgcccacccgccttcctcgacccttccctcgacgagaacgtcatcctcaa 76906 Query: 367 gagcggcctcaactatgcgtc---cggcggcggcatcctcaacgagacctcgtccctctt 423 | ||||| |||||| || || ||||||||||||||||||||||||||| |||||||| Sbjct: 76907 gcgcggcgtcaacttcgcctccggcggcggcggcatcctcaacgagacctcctccctctt 76966 Score = 228 bits (115), Expect = 2e-56 Identities = 145/155 (93%) Strand = Plus / Plus Query: 425 atacagaggttctcactgtacaagcagatcgagctgttccaggggacgcaggcgttcatg 484 |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 77473 atacagagattctcgctgtacaagcagatcgagctgttccaggggacgcaggagttcatg 77532 Query: 485 cgggagaagatagggcaggcggcggcggacaagctgttcggcgaggcctactacgtggtg 544 ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77533 cggcgcaaggtcgggaaggcggcggcggacaagctgttcggcgaggcctactacgtggtg 77592 Query: 545 gccatgggcgccaacgacttcatcaacaactacct 579 || |||||||||||||||||||||||||||||||| Sbjct: 77593 gcgatgggcgccaacgacttcatcaacaactacct 77627
>ref|XM_467638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||| ||||||||||||| ||||||||||| Sbjct: 106 ttcggcgactcgatgtcggacgtggggaacaacaacta 143
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||| ||||||||||||| ||||||||||| Sbjct: 30574640 ttcggcgactcgatgtcggacgtggggaacaacaacta 30574603 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 224 tacggcatcgacttcggcagcggcatgcccaacggcaggttctgcaacggc 274 ||||||||||||||| | |||||| | ||| |||||||||| |||||||| Sbjct: 11071011 tacggcatcgacttccccggcggcaaggccaccggcaggttcagcaacggc 11071061 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 167 gacgtgggcaacaacaactatctga 191 |||||||||||||||||||| |||| Sbjct: 27176363 gacgtgggcaacaacaactacctga 27176339 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tcggcgactcgctgtcggac 169 |||||||||||||||||||| Sbjct: 23683706 tcggcgactcgctgtcggac 23683687
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||| ||||||||||||| ||||||||||| Sbjct: 86648 ttcggcgactcgatgtcggacgtggggaacaacaacta 86611
>ref|XM_463028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 150 tcggcgactcgctgtcggacgtgggcaacaacaac 184 |||||||||||||| |||||||||| ||||||||| Sbjct: 107 tcggcgactcgctggcggacgtggggaacaacaac 141
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 150 tcggcgactcgctgtcggacgtgggcaacaacaac 184 |||||||||||||| |||||||||| ||||||||| Sbjct: 21089750 tcggcgactcgctggcggacgtggggaacaacaac 21089716 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||| ||||||||||||||||| Sbjct: 11034259 ccaacgatttcatcaacaactacct 11034283
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 150 tcggcgactcgctgtcggacgtgggcaacaacaac 184 |||||||||||||| |||||||||| ||||||||| Sbjct: 67506 tcggcgactcgctggcggacgtggggaacaacaac 67472
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 150 tcggcgactcgctgtcggacgtgggcaacaacaac 184 |||||||||||||| |||||||||| ||||||||| Sbjct: 21082779 tcggcgactcgctggcggacgtggggaacaacaac 21082745 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||| ||||||||||||||||| Sbjct: 11031022 ccaacgatttcatcaacaactacct 11031046
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||||||| |||| ||||| || ||||||||||| Sbjct: 140241 catcttcggcgactcgatgtccgacgtcgggaacaacaacta 140282
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||||||| |||| ||||| || ||||||||||| Sbjct: 41383 catcttcggcgactcgatgtccgacgtcgggaacaacaacta 41424
>dbj|AK108686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C04, full insert sequence Length = 1426 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaacta 186 |||||||||||||||| |||| ||||| || ||||||||||| Sbjct: 160 catcttcggcgactcgatgtccgacgtcgggaacaacaacta 201
>ref|XM_483839.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1523 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 551 ggcgccaacgacttcatcaacaactac 577 |||| |||||||||||||||||||||| Sbjct: 627 ggcggcaacgacttcatcaacaactac 653
>ref|XM_465038.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1397 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 224 tacggcatcgacttcggcagcggcatgcccaacggcaggttctgcaacggc 274 ||||||||||||||| | |||||| | ||| |||||||||| |||||||| Sbjct: 220 tacggcatcgacttccccggcggcaaggccaccggcaggttcagcaacggc 270
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 551 ggcgccaacgacttcatcaacaactac 577 |||| |||||||||||||||||||||| Sbjct: 28339872 ggcggcaacgacttcatcaacaactac 28339898
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 243 gcggcatgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcgg 297 |||||||||||| |||| | ||| ||||||||| ||| |||| ||||||||||| Sbjct: 28170955 gcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacatcatcgg 28170901 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||||||| ||||||||||||| Sbjct: 28170423 ccaacgacttcctcaacaactacct 28170399
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 243 gcggcatgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcgg 297 |||||||||||| |||| | ||| ||||||||| ||| |||| ||||||||||| Sbjct: 26500 gcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacatcatcgg 26446 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||||||| ||||||||||||| Sbjct: 25968 ccaacgacttcctcaacaactacct 25944
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 243 gcggcatgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcgg 297 |||||||||||| |||| | ||| ||||||||| ||| |||| ||||||||||| Sbjct: 154251 gcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacatcatcgg 154197 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||||||| ||||||||||||| Sbjct: 153719 ccaacgacttcctcaacaactacct 153695
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 224 tacggcatcgacttcggcagcggcatgcccaacggcaggttctgcaacggc 274 ||||||||||||||| | |||||| | ||| |||||||||| |||||||| Sbjct: 53705 tacggcatcgacttccccggcggcaaggccaccggcaggttcagcaacggc 53755
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 551 ggcgccaacgacttcatcaacaactac 577 |||| |||||||||||||||||||||| Sbjct: 68678 ggcggcaacgacttcatcaacaactac 68704
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 551 ggcgccaacgacttcatcaacaactac 577 |||| |||||||||||||||||||||| Sbjct: 131687 ggcggcaacgacttcatcaacaactac 131713
>dbj|AK106778.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H02, full insert sequence Length = 1523 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 551 ggcgccaacgacttcatcaacaactac 577 |||| |||||||||||||||||||||| Sbjct: 627 ggcggcaacgacttcatcaacaactac 653
>dbj|AK101883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070K23, full insert sequence Length = 1397 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 224 tacggcatcgacttcggcagcggcatgcccaacggcaggttctgcaacggc 274 ||||||||||||||| | |||||| | ||| |||||||||| |||||||| Sbjct: 220 tacggcatcgacttccccggcggcaaggccaccggcaggttcagcaacggc 270
>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence Length = 1666 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 243 gcggcatgcccaacggcaggttctgcaacggccgcaccgtcgctgacatcatcgg 297 |||||||||||| |||| | ||| ||||||||| ||| |||| ||||||||||| Sbjct: 365 gcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacatcatcgg 419 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||||||| ||||||||||||| Sbjct: 683 ccaacgacttcctcaacaactacct 707
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 562 cttcatcaacaactacctgctg 583 |||||||||||||||||||||| Sbjct: 2113212 cttcatcaacaactacctgctg 2113233
>gb|AF178117.1|AF178117 Rhodospirillum rubrum polyhydroxyalkanoate synthase (PHA C) gene, complete cds Length = 2990 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 562 cttcatcaacaactacctgctg 583 |||||||||||||||||||||| Sbjct: 2307 cttcatcaacaactacctgctg 2328
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 514 caagctgttcggcgaggcctactacg 539 ||||||||||||| |||||||||||| Sbjct: 4645223 caagctgttcggccaggcctactacg 4645248
>gb|DQ238050.1| Pseudomonas putida strain DLL-E4 hmg operon, complete sequence Length = 3243 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 atgcccaacggcaggttctgca 269 |||||||||||||||||||||| Sbjct: 1391 atgcccaacggcaggttctgca 1370
>ref|XM_522071.1| PREDICTED: Pan troglodytes similar to Yip1 interacting factor homolog (LOC466672), mRNA Length = 1254 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 921 gctggccctgctcctgggcct 941
>gb|DQ136258.1| Simian immunodeficiency virus SIVmac clone 264cerebrum4 envelope glycoprotein (env) gene, complete cds Length = 2640 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 253 caacggcaggttctgcaacggccgcaccgtcgctgac 289 |||||||||||||||||| || ||| |||||||||| Sbjct: 1610 caacggcaggttctgcaatgggcgcggcgtcgctgac 1646
>gb|AY290708.1| Simian immunodeficiency virus clone BR5 envelope glycoprotein (env) gene, complete cds Length = 2622 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 253 caacggcaggttctgcaacggccgcaccgtcgctgac 289 |||||||||||||||||| || ||| |||||||||| Sbjct: 1592 caacggcaggttctgcaatgggcgcggcgtcgctgac 1628
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||| ||||||||||||||||| Sbjct: 98863 ccaacgatttcatcaacaactacct 98839
>emb|CR627476.1| Homo sapiens genomic DNA; cDNA DKFZp547A2312 (from clone DKFZp547A2312) Length = 1375 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 280 gctggccctgctcctgggcct 260
>emb|CR623077.1| full-length cDNA clone CS0DD009YG08 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 926 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 597 gctggccctgctcctgggcct 617
>emb|CR617538.1| full-length cDNA clone CS0DD005YK22 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1061 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 678 gctggccctgctcctgggcct 698
>emb|CR615524.1| full-length cDNA clone CS0DC017YF16 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1036 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 700 gctggccctgctcctgggcct 720
>emb|CR614462.1| full-length cDNA clone CS0DH002YP02 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1075 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 725 gctggccctgctcctgggcct 745
>emb|CR608977.1| full-length cDNA clone CS0DD005YG18 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1062 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 688 gctggccctgctcctgggcct 708
>emb|CR606217.1| full-length cDNA clone CS0DI087YD04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 978 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 588 gctggccctgctcctgggcct 608
>emb|CR598403.1| full-length cDNA clone CS0DE014YN17 of Placenta of Homo sapiens (human) Length = 1090 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 700 gctggccctgctcctgggcct 720
>emb|CR597866.1| full-length cDNA clone CS0DI056YI03 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 691 gctggccctgctcctgggcct 711
>gb|DQ412047.1| Ochrobactrum anthropi putative response regulatory protein gene, partial cds; putative transcription regulator tetR family protein (pqrR2), putative transcription regulator lysR family protein (pqrR1), and putative periplasmic substrate binding protein genes, complete cds; and putative amino acid ABC transporter permease protein gene, partial cds Length = 4971 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 cgctggccctgctcctgggccttgc 123 ||||||||||| ||||||||||||| Sbjct: 4284 cgctggccctgatcctgggccttgc 4308
>emb|CR456710.1| Homo sapiens full open reading frame cDNA clone RZPDo834G023D for gene YIF1, Yip1 interacting factor homolog (S. cerevisiae); complete cds, incl. stopcodon Length = 882 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 549 gctggccctgctcctgggcct 569
>gb|BC001299.1| Homo sapiens Yip1 interacting factor homolog A (S. cerevisiae), mRNA (cDNA clone MGC:5467 IMAGE:3451489), complete cds Length = 1096 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 682 gctggccctgctcctgggcct 702
>gb|BC009892.2| Homo sapiens Yip1 interacting factor homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:4098231), partial cds Length = 565 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 158 gctggccctgctcctgggcct 178
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 23332579 ttcggcgactcgctggtggacgtcggcaacaac 23332547 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaac 184 ||||||||||||||||||| |||| |||||||||||| Sbjct: 10070984 catcttcggcgactcgctggtggacagcggcaacaacaac 10070945 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 caagatgggcctcccgcggccgcc 324 ||||||||||||||||| |||||| Sbjct: 1264345 caagatgggcctcccgccgccgcc 1264322
>ref|NM_020470.1| Homo sapiens Yip1 interacting factor homolog A (S. cerevisiae) (YIF1A), mRNA Length = 1078 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 664 gctggccctgctcctgggcct 684
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 167 gacgtgggcaacaacaactatctga 191 |||||||||||||||||||| |||| Sbjct: 72812 gacgtgggcaacaacaactacctga 72788
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 167 gacgtgggcaacaacaactatctga 191 |||||||||||||||||||| |||| Sbjct: 27034 gacgtgggcaacaacaactacctga 27010
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full insert sequence Length = 1582 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 175 ttcggcgactcgctggtggacgtcggcaacaac 207
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence Length = 1741 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 175 ttcggcgactcgctggtggacgtcggcaacaac 207
>dbj|AK060625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G08, full insert sequence Length = 1443 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||| ||||||||||||||||| Sbjct: 692 ccaacgatttcatcaacaactacct 716
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full insert sequence Length = 1637 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 249 ttcggcgactcgctggtggacgtcggcaacaac 281
>gb|AF004876.1|AF004876 Homo sapiens 54TMp (54tm) mRNA, complete cds Length = 1078 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 664 gctggccctgctcctgggcct 684
>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete sequences Length = 196662 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 25729 gctggccctgctcctgggcct 25709
>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete sequence Length = 198814 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 153489 gctggccctgctcctgggcct 153509
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 555 ccaacgacttcatcaacaactacct 579 ||||||| ||||||||||||||||| Sbjct: 77744 ccaacgatttcatcaacaactacct 77768
>gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome 16, complete sequence Length = 208504 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gctggccctgctcctgggcct 120 ||||||||||||||||||||| Sbjct: 29576 gctggccctgctcctgggcct 29596
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 23260770 ttcggcgactcgctggtggacgtcggcaacaac 23260738 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaac 184 ||||||||||||||||||| |||| |||||||||||| Sbjct: 10070869 catcttcggcgactcgctggtggacagcggcaacaacaac 10070830 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 caagatgggcctcccgcggccgcc 324 ||||||||||||||||| |||||| Sbjct: 1264345 caagatgggcctcccgccgccgcc 1264322
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 149 ttcggcgactcgctgtcggacgtgggcaacaac 181 ||||||||||||||| |||||| ||||||||| Sbjct: 145697 ttcggcgactcgctggtggacgtcggcaacaac 145665
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 224 tacggcatcgacttcggcagcggcatgc 251 ||||||||||| ||||||||||||||| Sbjct: 134223 tacggcatcgaggtcggcagcggcatgc 134250
>ref|XM_549903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 582 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 48 ggcctcccgcggccgccggc 29
>ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa8142 predicted mRNA Length = 1125 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 120 gttcagcttcggcgactcgctgacggac 147
>ref|XM_475775.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1569 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 48 ggcctcccgcggccgccggc 29
>ref|XM_466608.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tcggcgactcgctgtcggac 169 |||||||||||||||||||| Sbjct: 147 tcggcgactcgctgtcggac 166
>ref|NM_191862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgct 162 |||||||||||||||||||| Sbjct: 97 ttcatcttcggcgactcgct 116
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 caacgacttcatcaacaact 575 |||||||||||||||||||| Sbjct: 594720 caacgacttcatcaacaact 594739
>ref|XM_866545.1| PREDICTED: Bos taurus similar to Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3) (LOC614900), mRNA Length = 2709 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gggcctcccgcggccgccgg 326 |||||||||||||||||||| Sbjct: 677 gggcctcccgcggccgccgg 658
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 99241 ggcctcccgcggccgccggc 99260
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gcccaacggcaggttctgca 269 |||||||||||||||||||| Sbjct: 3977712 gcccaacggcaggttctgca 3977731
>gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) genomic sequence Length = 46427 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 acggcatcgacttcggcagcggca 248 ||||||||||| |||||||||||| Sbjct: 4916 acggcatcgacgtcggcagcggca 4939
>emb|AJ245436.1|POL245436 Pseudomonas putida OCT plasmid alk genes cluster (alkBFGHJKL, alkN and alkST genes) and flanking DNA, strain TF4-1L (GPo1), formerly annotated as Pseudomonas oleovorans Length = 34902 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ctccaagagcggcctcaact 380 |||||||||||||||||||| Sbjct: 22264 ctccaagagcggcctcaact 22283
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 208 cgcggcgctgccgtggtacggcatcgac 235 |||||||||||||||| || |||||||| Sbjct: 70528 cgcggcgctgccgtgggacagcatcgac 70501
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 208 cgcggcgctgccgtggtacggcatcgac 235 |||||||||||||||| || |||||||| Sbjct: 69853 cgcggcgctgccgtgggacagcatcgac 69826
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 agcagatcgagctgttccag 466 |||||||||||||||||||| Sbjct: 3284004 agcagatcgagctgttccag 3284023
>emb|X60668.1|MASIVENV Simian immunodeficiency virus env gene, partial Length = 1098 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 258 gcaggttctgcaacggccgcaccgtcgctgac 289 ||||||||||||| || |||| |||||||||| Sbjct: 457 gcaggttctgcaatgggcgcagcgtcgctgac 488
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 aagcagatcgagctgttcca 465 |||||||||||||||||||| Sbjct: 135629 aagcagatcgagctgttcca 135610
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 gccaacgacttcatcaacaa 573 |||||||||||||||||||| Sbjct: 62233 gccaacgacttcatcaacaa 62214
>emb|AJ276389.1|DOR276389 Dendrobium grex Madame Thong-IN mRNA for knotted1-like homeobox protein Length = 1400 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 cccaacggcaggttctgcaacggc 274 |||| ||||||||||||||||||| Sbjct: 67 cccaccggcaggttctgcaacggc 44
>gb|AF334679.1|AF334679 Simian immunodeficiency virus strain SIVsmSL92b, complete genome Length = 9613 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 255 acggcaggttctgcaacggccgcaccgtcgct 286 |||||||||||||||| || |||| ||||||| Sbjct: 7663 acggcaggttctgcaatgggcgcagcgtcgct 7694
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 26454550 ggcctcccgcggccgccggc 26454569
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgct 162 |||||||||||||||||||| Sbjct: 30355313 ttcatcttcggcgactcgct 30355332 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 6318572 gttcagcttcggcgactcgctgacggac 6318599 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 796618 ggcctcccgcggccgccggc 796599
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgct 162 |||||||||||||||||||| Sbjct: 143632 ttcatcttcggcgactcgct 143651
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgct 162 |||||||||||||||||||| Sbjct: 41040 ttcatcttcggcgactcgct 41059
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 ggcggcggcggacaagctgttcgg 525 ||||||||||||||||||| |||| Sbjct: 5067467 ggcggcggcggacaagctgatcgg 5067490 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 tggccatgggcgccaacgacttca 566 |||||||||||| ||||||||||| Sbjct: 753588 tggccatgggcggcaacgacttca 753565
>gb|AF149016.1|AF149016 Zea mays tapetum-specific endoxylanase gene, complete cds Length = 3711 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 gtggtggccatgggcgccaacgac 562 ||||| |||||||||||||||||| Sbjct: 2296 gtggtcgccatgggcgccaacgac 2319
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 89638 gttcagcttcggcgactcgctgacggac 89665
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gctggccctgctcctgggcc 119 |||||||||||||||||||| Sbjct: 7688428 gctggccctgctcctgggcc 7688409
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 gcgccaacgacttcatcaacaact 575 ||||| |||||||||||||||||| Sbjct: 51392 gcgccgacgacttcatcaacaact 51415
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 gcgccaacgacttcatcaacaact 575 ||||| |||||||||||||||||| Sbjct: 128708 gcgccgacgacttcatcaacaact 128731
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0506C10 Length = 150549 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 ttcatcttcggcgactcgctgtcggacg 170 |||| |||||||||||||||||| |||| Sbjct: 3681 ttcagcttcggcgactcgctgtccgacg 3654
>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463F06 Length = 144322 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 19292 ggcctcccgcggccgccggc 19273
>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1212_B09 Length = 130728 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 73818 ggcctcccgcggccgccggc 73799
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tcggcgactcgctgtcggac 169 |||||||||||||||||||| Sbjct: 124806 tcggcgactcgctgtcggac 124787
>dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F10, full insert sequence Length = 1452 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 183 gttcagcttcggcgactcgctgacggac 210
>dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E01, full insert sequence Length = 1520 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 180 gttcagcttcggcgactcgctgacggac 207
>dbj|AK107196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A09, full insert sequence Length = 1876 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcctcccgcggccgccggc 327 |||||||||||||||||||| Sbjct: 120 ggcctcccgcggccgccggc 101
>dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full insert sequence Length = 2149 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgct 162 |||||||||||||||||||| Sbjct: 193 ttcatcttcggcgactcgct 212
>dbj|AK067909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123P18, full insert sequence Length = 1580 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgctgtcggacg 170 |||| |||||||||||||||||| |||| Sbjct: 239 ttcagcttcggcgactcgctgtccgacg 266
>dbj|AK063071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H02, full insert sequence Length = 987 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaac 184 ||||||||||||||||||| |||| |||||||||||| Sbjct: 172 catcttcggcgactcgctggtggacagcggcaacaacaac 211
>dbj|AK061422.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F12, full insert sequence Length = 1323 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 ttcatcttcggcgactcgctgtcggacg 170 |||| |||||||||||||||||| |||| Sbjct: 235 ttcagcttcggcgactcgctgtccgacg 262
>dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full insert sequence Length = 1577 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 183 gttcagcttcggcgactcgctgacggac 210
>dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B07, full insert sequence Length = 1691 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gttcatcttcggcgactcgctgtcggac 169 ||||| |||||||||||||||| ||||| Sbjct: 443 gttcagcttcggcgactcgctgacggac 470
>gb|AY110911.1| Zea mays CL1226_1 mRNA sequence Length = 1801 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 539 gtggtggccatgggcgccaacgac 562 ||||| |||||||||||||||||| Sbjct: 390 gtggtcgccatgggcgccaacgac 413
>gb|AC166361.2| Mus musculus BAC clone RP23-293N23 from chromosome 12, complete sequence Length = 212100 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 gctgttccaggggacgcagg 476 |||||||||||||||||||| Sbjct: 188303 gctgttccaggggacgcagg 188322
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 145 catcttcggcgactcgctgtcggacgtgggcaacaacaac 184 ||||||||||||||||||| |||| |||||||||||| Sbjct: 91637 catcttcggcgactcgctggtggacagcggcaacaacaac 91676
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 caagatgggcctcccgcggccgcc 324 ||||||||||||||||| |||||| Sbjct: 28437 caagatgggcctcccgccgccgcc 28460
>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence Length = 233864 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gctgttccaggggacgcagg 476 |||||||||||||||||||| Sbjct: 201745 gctgttccaggggacgcagg 201726
>gb|M83293.1|SIVSTM Simian (stump-tailed macaque) immunodeficiency virus, isolate STM, complete genome, proviral DNA Length = 9892 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 258 gcaggttctgcaacggccgcaccgtcgctgac 289 ||||||||||||| || |||| |||||||||| Sbjct: 7869 gcaggttctgcaatgggcgcagcgtcgctgac 7900
>dbj|AB070955.1| Streptomyces avermitilis peptide-6 biosynthetic gene cluster Length = 14452 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 tggccatgggcgccaacgacttca 566 |||||||||||| ||||||||||| Sbjct: 12266 tggccatgggcggcaacgacttca 12289 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,156,888 Number of Sequences: 3902068 Number of extensions: 4156888 Number of successful extensions: 86539 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83537 Number of HSP's gapped (non-prelim): 2996 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
