Clone Information

BLAST Search Result

Clone Name	bart38e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TSJT1_TOBAC (P24805) Stem-specific protein TSJT1	104	2e-22
2	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	37	0.031
3	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	37	0.052
4	ASNH_MYCTU (P64247) Putative asparagine synthetase [glutamine-hy...	35	0.15
5	ASNH_MYCBO (P64248) Putative asparagine synthetase [glutamine-hy...	35	0.15
6	CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Letha...	35	0.20
7	YMJ6_YEAST (Q04489) Hypothetical 59.5 kDa protein in VPS9-RAD10 ...	34	0.26
8	CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor	34	0.34
9	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	33	0.58
10	CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor	33	0.58
11	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	33	0.58
12	ASNS_CHICK (Q5ZJU3) Asparagine synthetase [glutamine-hydrolyzing...	33	0.75
13	ASNH1_METJA (Q58516) Putative asparagine synthetase [glutamine-h...	33	0.75
14	CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor	32	0.98
15	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	32	0.98
16	CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)	32	1.3
17	COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor	32	1.7
18	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	32	1.7
19	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	32	1.7
20	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	32	1.7
21	COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor	31	2.2
22	COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor	31	2.2
23	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	31	2.2
24	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	31	2.2
25	COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)	31	2.2
26	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	31	2.9
27	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	31	2.9
28	ASNS_PONPY (Q5R6W9) Asparagine synthetase [glutamine-hydrolyzing...	30	3.7
29	ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing...	30	3.7
30	CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor	30	3.7
31	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	30	3.7
32	CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor	30	3.7
33	CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor	30	4.9
34	CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor	30	4.9
35	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	30	4.9
36	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	30	4.9
37	COL40_CAEEL (P34804) Cuticle collagen 40	30	4.9
38	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	30	4.9
39	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	30	4.9
40	ACS2_ZYGBA (Q96VC7) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) ...	30	4.9
41	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	30	6.4
42	COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)	30	6.4
43	ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzi...	30	6.4
44	COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibr...	30	6.4
45	SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D pre...	30	6.4
46	SFTPD_MOUSE (P50404) Pulmonary surfactant-associated protein D p...	30	6.4
47	CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor	30	6.4
48	COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)	30	6.4
49	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	30	6.4
50	COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor	29	8.3
51	GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 ...	29	8.3
52	COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor	29	8.3
53	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	29	8.3
54	M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotei...	29	8.3
55	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	29	8.3

>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1|
          Length = 149

 Score =  104 bits (259), Expect = 2e-22
 Identities = 52/128 (40%), Positives = 77/128 (60%)
 Frame = +3

Query: 153 GSRTPSPKTRASELMKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIFCL 332
           G +    KTR  E+ + F      +    L +   +A+SH  E+ L PRS    D++FC+
Sbjct: 22  GIQKKEAKTR-EEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCI 80

Query: 333 FEGVLDNLGRLSQQYGLSKGSNEVLLVIEAYKTLRDRAPYPASFMLSQLAGSYAFVLFDK 512
           F G LDN   L + YGLS+ + E ++++EAYK LRDRAPYP   ++ +L G +AF+LFD 
Sbjct: 81  FSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDS 140

Query: 513 STSSLFVA 536
             S+LF+A
Sbjct: 141 KASTLFLA 148

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451
           RGSPG+ G+A PA  P     RG+PG RGL  A+G+  +
Sbjct: 387 RGSPGEAGSAGPAGPP---GLRGSPGSRGLPGADGRAGV 422

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 36.6 bits (83), Expect = 0.052
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451
           RGSPG+ G+A PA  P     RG+PG RGL  A+G+  +
Sbjct: 387 RGSPGEPGSAGPAGPP---GLRGSPGSRGLPGADGRAGV 422

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>ASNH_MYCTU (P64247) Putative asparagine synthetase [glutamine-hydrolyzing] (EC|
           6.3.5.4)
          Length = 652

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 465 MLSQLAGSYAFVLFDKSTSSLFVASDPEGKVPLF 566
           +L +L G +AF L+D  T  LF A DP G  PLF
Sbjct: 130 VLQRLRGMFAFALWDTVTRELFCARDPFGIKPLF 163

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>ASNH_MYCBO (P64248) Putative asparagine synthetase [glutamine-hydrolyzing] (EC|
           6.3.5.4)
          Length = 652

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 465 MLSQLAGSYAFVLFDKSTSSLFVASDPEGKVPLF 566
           +L +L G +AF L+D  T  LF A DP G  PLF
Sbjct: 130 VLQRLRGMFAFALWDTVTRELFCARDPFGIKPLF 163

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>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG+ G A PA R  Q    G PG  GL+  +G   LP
Sbjct: 1018 GLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLP 1056

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>YMJ6_YEAST (Q04489) Hypothetical 59.5 kDa protein in VPS9-RAD10 intergenic|
           region
          Length = 525

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +3

Query: 297 RSFAAKDEIFCLFEGVLDNLGRLSQQYGLSKGSNEVLLVIEAYKTLRDRAPYPASFMLSQ 476
           +S    D  F  F G L N         +S+G N+ L +    + L++        ++  
Sbjct: 81  QSINVDDRYFLQFNGELYNKE-------ISQGDNDSLYIASMLQNLKEGMG--VIDVIKS 131

Query: 477 LAGSYAFVLFDKSTSSLFVASDPEGK 554
           L G YA+ ++D ++S L+   DP G+
Sbjct: 132 LEGEYAYTIYDVNSSKLYFGRDPIGR 157

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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454
           G+PG  G+  P   R L G +  RGAPG RGLQ  +G   LP
Sbjct: 704 GNPGDPGSRGPEGSRGLPGMEGPRGAPGPRGLQGEQGAPGLP 745

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G PG  G   PA  P     RG PG+RG Q   G    P
Sbjct: 773 GPPGDKGETGPAGAPGPAGSRGGPGERGEQGLPGPAGFP 811

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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           GSPG++G A P+  P      G PGDRGL    G
Sbjct: 348 GSPGEMGEAGPSGEPGIPGDVGIPGDRGLPGPRG 381

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 332  VRGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            + G PG+ G    A RP +  +RG  G+RG Q  +G   LP
Sbjct: 2041 IPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081

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>ASNS_CHICK (Q5ZJU3) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)|
           (Glutamine-dependent asparagine synthetase)
          Length = 560

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = +3

Query: 321 IFCLFEGVLDNLGRLSQQYGLSKGSNEVLLVIEAYKTLRDRAPYPASFMLSQLAGSYAFV 500
           ++  + G + N  +L +Q+G      + L+  E    L +R     +   S L G +AF+
Sbjct: 69  LWLCYNGEIYNFKQLQEQFGFEY---QTLVDGEVILHLYNRGGIEQT--ASMLDGVFAFI 123

Query: 501 LFDKSTSSLFVASDPEGKVPLF 566
           L D +   +F+A D  G  PLF
Sbjct: 124 LLDTANRKVFLARDTYGVRPLF 145

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>ASNH1_METJA (Q58516) Putative asparagine synthetase [glutamine-hydrolyzing] 1|
           (EC 6.3.5.4)
          Length = 541

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 468 LSQLAGSYAFVLFDKSTSSLFVASDPEGKVPLFW 569
           L +L G YAF ++DKS + + +A D  G  PLF+
Sbjct: 129 LEELDGDYAFAIYDKSKNVVRLARDMFGVKPLFY 162

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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454
           G+PG+ G   P  +R L G +  RG PG RG+Q  +G   LP
Sbjct: 706 GNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGEQGATGLP 747

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQ--GQQRGAPGDRGLQDAEGQGSLP 454
           +G+ G+ G   P+  P +  G ++GAPGD GLQ   G+  +P
Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP 305



 Score = 26.6 bits (57), Expect(2) = 2.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG LG   P  +P +  + G PG  G +  +G    P
Sbjct: 1379 GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEP 1417



 Score = 22.7 bits (47), Expect(2) = 2.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 501  LFDKSTSSLFVASDPEGKVPLFWG 572
            +F + + +  + S PEG VPL+ G
Sbjct: 1447 VFTRHSQTTAIPSCPEGTVPLYSG 1470

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>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)|
          Length = 325

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454
           G+PG+ G   P  +R L G +  RG PG RG+Q  +G   LP
Sbjct: 110 GNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGVQGEQGATGLP 151

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>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 335  RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            +G PG +G   P     +   RG PG +G   A+G G +P
Sbjct: 1450 KGHPGLIGLIGPPGEQGEKGDRGLPGSQGSPGAKGDGGIP 1489

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451
           RGS G++G A P   P     RG PG RGL  A+G+  +
Sbjct: 379 RGSTGEIGPAGPPGPP---GLRGNPGSRGLPGADGRAGV 414

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQG 445
           RGS G++GA  PA   L+G  RG  G RGL   EG+G
Sbjct: 375 RGSTGEVGATGPA--GLRGA-RGGAGTRGLPGLEGRG 408

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 421
           G+PG  G A P+  P     RGAPGDRG
Sbjct: 765 GAPGDKGEAGPSGPPGPTGARGAPGDRG 792

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>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQR-------GAPGDRGLQDAEGQGSLP 454
           RG PG+ G  EP V  + GQ+        G PG+RGL   +G   LP
Sbjct: 163 RGPPGEKG--EPGVPGINGQKGEMGFGVPGRPGNRGLPGPQGPQGLP 207

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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 335  RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            +G PG +G   P     +   RG PG +G   A+G G +P
Sbjct: 1452 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 1491

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG+ G   PA R  +  + G PG  GL+  +G   LP
Sbjct: 1020 GLPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLP 1058



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG  G A P  +P    Q+G PG  G+  A+G+  LP
Sbjct: 930  GLPGVPGLAGPPGQPGFPGQKGQPGFPGVAGAKGEAGLP 968

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           G PG LG A PA +  +  + G PG+RGL    G
Sbjct: 215 GPPGALGPAGPAGKDGESGRPGRPGERGLPGPPG 248



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           GSPG  G A P   P +  + G PG  G   A GQ   P
Sbjct: 782 GSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEP 820

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>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 482

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           +G PG +G   P     +   RG PG +G   A+G G +P
Sbjct: 128 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 167

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451
           RGS G+ G+A P   P     RG PG RGL  A+G+  +
Sbjct: 379 RGSNGEPGSAGP---PGPAGLRGEPGSRGLPGADGRAGV 414



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           +G  G+ GAA P   P      GAPG  GL  + G+  LP
Sbjct: 844 KGPSGEAGAAGPPGTPGPQGILGAPGILGLPGSRGERGLP 883

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 335  RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
            RG PG  G       P +    G PGDRGL+ A+G
Sbjct: 920  RGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKG 954

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>ASNS_PONPY (Q5R6W9) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)|
           (Glutamine-dependent asparagine synthetase)
          Length = 560

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 468 LSQLAGSYAFVLFDKSTSSLFVASDPEGKVPLF 566
           +  L G +AFVL D +T  +F+  D  G  PLF
Sbjct: 113 ICMLDGVFAFVLLDTATKKVFLGRDTYGVRPLF 145

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>ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC|
           6.3.5.4)
          Length = 632

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 471 SQLAGSYAFVLFDKSTSSLFVASDPEGKVPLFW 569
           S+L G +AF++++K+   L+ A DP G  PL++
Sbjct: 119 SKLRGMFAFLIWNKNDHVLYGARDPFGIKPLYY 151

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>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            GSPG+ G   P +   QG   G+PG++G +  +GQ  LP
Sbjct: 1020 GSPGEKGV--PGIPGSQGVP-GSPGEKGAKGEKGQSGLP 1055



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 335  RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            RGSPG +G       P +   +G PG  G+   +G+  LP
Sbjct: 1099 RGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLP 1138

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           RG PG  G   PA       +RGAPG RG   A+G
Sbjct: 461 RGEPGPAGLPGPA------GERGAPGSRGFPGADG 489



 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G PG+ G    A +P +  QRG PG +G +   G   LP
Sbjct: 213 GPPGKNGDDGEAGKPGRPGQRGPPGPQGARGLPGTAGLP 251

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>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor|
          Length = 1707

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 335  RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            RG PG LG   P   P     RGAPG  G Q   G  ++P
Sbjct: 1405 RGLPGALGEIGPQGPPGDPGFRGAPGKAGPQGRGGVSAVP 1444

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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454
           G+PG+ G   P   R L G +  RG PG RG+Q  +G   LP
Sbjct: 706 GNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLP 747

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>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVR-----PLQGQQRGAPGDRGLQDAEGQGSLP 454
           RG PG++  A+P  R     P Q   +G PGDRG     G   +P
Sbjct: 770 RGLPGEVLGAQPGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMP 814



 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           +G+PG++G     +  L+GQ RG PGD GL    G
Sbjct: 612 KGTPGEMGPPGLGLPGLKGQ-RGFPGDAGLPGPPG 645

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451
           RG  G+ G+A P   P     RG+PG RGL  A+G+  +
Sbjct: 381 RGPNGEAGSAGPPGPP---GLRGSPGSRGLPGADGRAGV 416

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           RG  G+ G+A P+  P     RG+PG RGL  A+G
Sbjct: 381 RGPNGEAGSAGPSGPP---GLRGSPGSRGLPGADG 412

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>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQ--QRGAPGDRGLQDAEGQGSLP 454
           G+PG  GA+EP      G     GAPG+ G   A G+   P
Sbjct: 248 GNPGSAGASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGAP 288

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           RG PG LG   P        +RGAPG+RG   ++G
Sbjct: 503 RGDPGTLGPPGPV------GERGAPGNRGFPGSDG 531

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 421
           G  G +GA  P+     G +RGAPGDRG
Sbjct: 490 GERGAVGATGPSGPAGPGGERGAPGDRG 517



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454
           RG+ G+ GA  P  R L G++  RGA G RG   A+G+  LP
Sbjct: 669 RGATGKQGARGP--RGLAGKRGLRGAGGSRGETGAQGEIGLP 708

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>ACS2_ZYGBA (Q96VC7) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 675

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 171 PKTRASELMKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIF 326
           PKTR+ ++M+R L       + +LG L  +A S V     +P   AA DE F
Sbjct: 623 PKTRSGKIMRRVLRKVASNEADQLGDLSTMANSEV-----VPSIIAAVDEQF 669

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>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 335 RGSPGQLGAAEP------AVRPLQGQQRGAPGDRGLQDAEGQGSLPRQL 463
           RG+PG+ G A P      A  P      GA GDRG +  +G+   P  L
Sbjct: 699 RGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPL 747

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>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G PG  G    A  P  G + G PG  G+Q  +G+  LP
Sbjct: 4   GPPGPPGPPGSAGEPGPGGRPGFPGTPGMQGPQGERGLP 42

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>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC|
           6.3.5.4)
          Length = 553

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 468 LSQLAGSYAFVLFDKSTSSLFVASDPEGKVPLFWG 572
           L  L G +AF L+D    +  +  D  G +PL+ G
Sbjct: 114 LDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMG 148

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>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
            G+PG  G A P+ +P +   RG PG  G++  +G
Sbjct: 2864 GAPGVPGVAGPSGKPGKPGDRGTPGTPGMKGEKG 2897



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG  GAA     P  G + G PG  G+Q   G+  +P
Sbjct: 2949 GPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGMP 2987

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>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D) (CP4)
          Length = 374

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
 Frame = +2

Query: 335 RGSPGQLGAAEPAVRP-------------LQGQQRGAPGDRGLQDAEGQGSLP 454
           +G+PG  GAA PA                L+G  RGAPGDRG+   +G+  LP
Sbjct: 173 QGAPGNAGAAGPAGPAGPQGAPGSRGPPGLKGD-RGAPGDRGI---KGESGLP 221

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>SFTPD_MOUSE (P50404) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 374

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 13/54 (24%)
 Frame = +2

Query: 332 VRGSPGQLGAAEPAVRP-------------LQGQQRGAPGDRGLQDAEGQGSLP 454
           V+G+PG  GAA PA                L+G  RG PGDRG+   +G+  LP
Sbjct: 172 VQGAPGNAGAAGPAGPAGPQGAPGSRGPPGLKGD-RGVPGDRGI---KGESGLP 221

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>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 314 G*DLLP-VRGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           G D LP + GSPG L  ++ A   + G + GAPG++GLQ   G
Sbjct: 730 GKDGLPGMIGSPG-LPGSKGATGDIFGAENGAPGEQGLQGLTG 771

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>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           G+PG  G A P+ +P +    G PG  GL+  +G
Sbjct: 59  GTPGSPGVAGPSGKPGKPGDHGRPGQSGLKGEKG 92

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G+PG  G A P   P +  ++G PG  G   A GQ   P
Sbjct: 627 GAPGVPGIAGPRGGPGERGEQGPPGPAGFPGAPGQNGEP 665

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>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG  G+A     P  G + G PG  G+Q   G+  LP
Sbjct: 2946 GPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLP 2984

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>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 329 PVRGSPGQ-LGAAEPAVRPLQGQ--QRGAPGDRGLQDAEGQ-GSLPRQ 460
           P +G  GQ LG  +   +P QGQ  Q+ A G +G Q  +GQ G  P Q
Sbjct: 585 PAQGQQGQQLGQGQQGQQPGQGQQGQQPAQGQQGQQPGQGQHGQQPGQ 632

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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 338  GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
            G PG  G+A     P  G + G PG  G+Q   G+  LP
Sbjct: 2945 GPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLP 2983

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G+PG  G A P   P +  + G PG  G   A GQ   P
Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP 821



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           G PG +G + PA +  +  + G PG+RGL    G
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249

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>M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotein precursor|
           (MSP130)
          Length = 779

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQG 445
           G PGQ G   P   P QG Q G  G  G     GQG
Sbjct: 310 GYPGQGGQGGPGYYPGQGGQGGQGGQGGWGQGGGQG 345

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454
           G+PG  G A P   P +  + G PG  G   A GQ   P
Sbjct: 782 GAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEP 820



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439
           G PG +G + PA +  +  + G PG+RGL    G
Sbjct: 215 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,542,294
Number of Sequences: 219361
Number of extensions: 966980
Number of successful extensions: 4727
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 3564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4678
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result